Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0013736

Physical Location & Seq

Genomic Coordinates Reverse (-)

34504901 .. 34521918

Gene Structure 17018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00027310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGCACTGGGCCTTGAAATTACTTATGGATCAAGAGAACTCGGTAAAGATATTGGAGCTCCCTCTGTTCCTAAACGCCTCCAACCCCCTTCACGATGCCATTGAGGAGCTCCGGCGCCTTCATCGCACCGATGTTGCGCGTGGCTCGCAGCACCACCGCCCGGCGACCATGCGAACAGAGAGTTATGCGTCGCGCACGCGATTGGGAACTCGCCGAACCTCCGGTCTGCTCGCTACCTGCATCATCCAACCCATCAATATGATCAAGTGGATTGCGAGGCTACTCTTTGGTAGAGCACTGTCCCCCCCGATATGTCAATTAACTAGTCTGTGGTACTTGAAGTCATCTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

13.43

Weight (kDa)

10.54

Isoelectric Point (pI)

53.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013736)

Species	Orthologous Gene IDs
malus_domestica	MD07G1055500.v1.1 MD17G1114100.v1.1
rosa_multiflora	Rmu_sc0002111.1_g000038 Rmu_sc0005223.1_g000024 Rmu_sc0005223.1_g000025 Rmu_sc0005664.1_g000044 Rmu_sc0009850.1_g000003
rosa_roxburghii	Rroxscaffold_1G00027310 Rroxscaffold_5G00355040 Rroxscaffold_7G00188050 Rroxscaffold_7G00199140 Rroxscaffold_7G00213780
rosa_rugosa	Rorug03G0293000
rosa_samantha	Rh5AG304200 Rh5AG409800 Rh5BG219300 Rh6BG266900
rosa_wichuraiana	Rw4G016630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	245
AccB1I	GGYRCC	1 cut(s)	114
AccII	CGCG	3 cut(s)	139, 193, 199
AciI	CCGC	1 cut(s)	157
AclWI	GGATC	1 cut(s)	36
AcyI	GRCGYC	1 cut(s)	115
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	2 cut(s)	16, 340
AhlI	ACTAGT	1 cut(s)	323
AluBI	AGCT	2 cut(s)	58, 109
AluI	AGCT	2 cut(s)	58, 109
Alw21I	GWGCWC	3 cut(s)	60, 111, 298
AlwI	GGATC	1 cut(s)	36
AoxI	GGCC	1 cut(s)	9
ApeKI	GCWGC	1 cut(s)	148
ArsI	GACNNNNNNTTYG	2 cut(s)	208, 240
AspLEI	GCGC	3 cut(s)	117, 139, 195
AspS9I	GGNCC	1 cut(s)	9
AsuC2I	CCSGG	1 cut(s)	161
BanI	GGYRCC	1 cut(s)	114
BanII	GRGCYC	2 cut(s)	60, 111
Bbv12I	GWGCWC	3 cut(s)	60, 111, 298
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	1 cut(s)	260
BclI	TGATCA	1 cut(s)	261
BcnI	CCSGG	1 cut(s)	161
BcuI	ACTAGT	1 cut(s)	323
BfaI	CTAG	2 cut(s)	324, 348
BfoI	RGCGCY	1 cut(s)	118
BfuAI	ACCTGC	1 cut(s)	245
BisI	GCNGC	1 cut(s)	149
BlsI	GCNGC	1 cut(s)	150
Bme1390I	CCNGG	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	9
BmiI	GGNNCC	1 cut(s)	116
BmrFI	CCNGG	1 cut(s)	161
BmrI	ACTGGG	1 cut(s)	16
BmsI	GCATC	2 cut(s)	85, 249
BmuI	ACTGGG	1 cut(s)	16
BpuMI	CCSGG	1 cut(s)	161
BsaHI	GRCGYC	1 cut(s)	115
BsaWI	WCCGGW	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse1I	ACTGG	1 cut(s)	11
BseGI	GGATG	1 cut(s)	243
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseNI	ACTGG	1 cut(s)	11
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	1 cut(s)	160
Bsh1236I	CGCG	3 cut(s)	139, 193, 199
BshFI	GGCC	1 cut(s)	11
BshNI	GGYRCC	1 cut(s)	114
BsiHKAI	GWGCWC	3 cut(s)	60, 111, 298
BsiSI	CCGG	3 cut(s)	112, 161, 222
BslFI	GGGAC	1 cut(s)	286
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmFI	GGGAC	1 cut(s)	286
BsnI	GGCC	1 cut(s)	11
Bsp1286I	GDGCHC	3 cut(s)	60, 111, 298
Bsp143I	GATC	2 cut(s)	28, 261
BspACI	CCGC	1 cut(s)	157
BspANI	GGCC	1 cut(s)	11
BspFNI	CGCG	3 cut(s)	139, 193, 199
BspLI	GGNNCC	1 cut(s)	116
BspMI	ACCTGC	1 cut(s)	245
BspPI	GGATC	1 cut(s)	36
BspT107I	GGYRCC	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	11
BssMI	GATC	2 cut(s)	28, 261
BssNI	GRCGYC	1 cut(s)	115
Bst4CI	ACNGT	1 cut(s)	300
BstACI	GRCGYC	1 cut(s)	115
BstC8I	GCNNGC	3 cut(s)	146, 197, 231
BstF5I	GGATG	1 cut(s)	243
BstFNI	CGCG	3 cut(s)	139, 193, 199
BstH2I	RGCGCY	1 cut(s)	118
BstHHI	GCGC	3 cut(s)	117, 139, 195
BstKTI	GATC	2 cut(s)	31, 264
BstMBI	GATC	2 cut(s)	28, 261
BstMWI	GCNNNNNNNGC	2 cut(s)	123, 145
BstSCI	CCNGG	1 cut(s)	159
BstUI	CGCG	3 cut(s)	139, 193, 199
BstV1I	GCAGC	1 cut(s)	160
BsuRI	GGCC	1 cut(s)	11
BtgZI	GCGATG	1 cut(s)	107
BtsCI	GGATG	1 cut(s)	243
BtsIMutI	CAGTG	2 cut(s)	4, 296
BveI	ACCTGC	1 cut(s)	245
Cac8I	GCNNGC	3 cut(s)	146, 197, 231
CfoI	GCGC	3 cut(s)	117, 139, 195
Cfr13I	GGNCC	1 cut(s)	9
CseI	GACGC	1 cut(s)	177
Csp6I	GTAC	1 cut(s)	334
CviAII	CATG	1 cut(s)	169
CviJI	RGCY	5 cut(s)	11, 58, 109, 144, 280
CviKI_1	RGCY	5 cut(s)	11, 58, 109, 144, 280
CviQI	GTAC	1 cut(s)	334
DinI	GGCGCC	1 cut(s)	116
DpnI	GATC	2 cut(s)	30, 263
DpnII	GATC	2 cut(s)	28, 261
Ecl136II	GAGCTC	2 cut(s)	58, 109
Eco24I	GRGCYC	2 cut(s)	60, 111
Eco53kI	GAGCTC	2 cut(s)	58, 109
EcoICRI	GAGCTC	2 cut(s)	58, 109
EcoT38I	GRGCYC	2 cut(s)	60, 111
EgeI	GGCGCC	1 cut(s)	116
EheI	GGCGCC	1 cut(s)	116
FaeI	CATG	1 cut(s)	172
FaiI	YATR	5 cut(s)	26, 170, 186, 260, 313
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	1 cut(s)	168
FbaI	TGATCA	1 cut(s)	261
Fnu4HI	GCNGC	1 cut(s)	149
FokI	GGATG	1 cut(s)	230
FriOI	GRGCYC	2 cut(s)	60, 111
Fsp4HI	GCNGC	1 cut(s)	149
FspBI	CTAG	2 cut(s)	324, 348
GlaI	GCGC	3 cut(s)	116, 138, 194
GluI	GCNGC	1 cut(s)	149
HaeII	RGCGCY	1 cut(s)	118
HaeIII	GGCC	1 cut(s)	11
HapII	CCGG	3 cut(s)	112, 161, 222
HgaI	GACGC	1 cut(s)	177
HhaI	GCGC	3 cut(s)	117, 139, 195
Hin1I	GRCGYC	1 cut(s)	115
Hin1II	CATG	1 cut(s)	172
Hin6I	GCGC	3 cut(s)	115, 137, 193
HinP1I	GCGC	3 cut(s)	115, 137, 193
HpaII	CCGG	3 cut(s)	112, 161, 222
Hpy188III	TCNNGA	2 cut(s)	32, 92
Hpy99I	CGWCG	1 cut(s)	193
HpyAV	CCTTC	2 cut(s)	98, 128
HpyCH4III	ACNGT	1 cut(s)	300
HpyCH4V	TGCA	2 cut(s)	4, 240
HpyF10VI	GCNNNNNNNGC	2 cut(s)	123, 145
Hsp92I	GRCGYC	1 cut(s)	115
Hsp92II	CATG	1 cut(s)	172
HspAI	GCGC	3 cut(s)	115, 137, 193
KasI	GGCGCC	1 cut(s)	114
Ksp22I	TGATCA	1 cut(s)	261
Kzo9I	GATC	2 cut(s)	28, 261
LmnI	GCTCC	4 cut(s)	55, 63, 106, 114
LpnPI	CCDG	4 cut(s)	125, 174, 235, 250
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	2 cut(s)	85, 249
MaeI	CTAG	2 cut(s)	324, 348
MalI	GATC	2 cut(s)	30, 263
MboI	GATC	2 cut(s)	28, 261
MhlI	GDGCHC	3 cut(s)	60, 111, 298
MluCI	AATT	2 cut(s)	17, 317
Mly113I	GGCGCC	1 cut(s)	115
MmeI	TCCRAC	2 cut(s)	105, 271
MnlI	CCTC	5 cut(s)	72, 88, 97, 229, 270
MseI	TTAA	2 cut(s)	320, 352
MslI	CAYNNNNRTG	1 cut(s)	257
MspI	CCGG	3 cut(s)	112, 161, 222
MspR9I	CCNGG	1 cut(s)	161
MvnI	CGCG	3 cut(s)	139, 193, 199
MwoI	GCNNNNNNNGC	2 cut(s)	123, 145
NarI	GGCGCC	1 cut(s)	115
NciI	CCSGG	1 cut(s)	161
NdeII	GATC	2 cut(s)	28, 261
NlaIII	CATG	1 cut(s)	172
NlaIV	GGNNCC	1 cut(s)	116
PkrI	GCNGC	1 cut(s)	150
PluTI	GGCGCC	1 cut(s)	118
Psp124BI	GAGCTC	2 cut(s)	60, 111
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	1 cut(s)	9
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
RseI	CAYNNNNRTG	1 cut(s)	257
SacI	GAGCTC	2 cut(s)	60, 111
SaqAI	TTAA	2 cut(s)	320, 352
SatI	GCNGC	1 cut(s)	149
Sau3AI	GATC	2 cut(s)	28, 261
Sau96I	GGNCC	1 cut(s)	9
ScrFI	CCNGG	1 cut(s)	161
SduI	GDGCHC	3 cut(s)	60, 111, 298
SetI	ASST	4 cut(s)	60, 111, 221, 239
SfaNI	GCATC	2 cut(s)	85, 249
SfoI	GGCGCC	1 cut(s)	116
SmiMI	CAYNNNNRTG	1 cut(s)	257
SpeI	ACTAGT	1 cut(s)	323
Sse9I	AATT	2 cut(s)	17, 317
SsiI	CCGC	1 cut(s)	157
SspDI	GGCGCC	1 cut(s)	114
SspMI	CTAG	2 cut(s)	324, 348
SstI	GAGCTC	2 cut(s)	60, 111
StyD4I	CCNGG	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	300
TasI	AATT	2 cut(s)	17, 317
Tru1I	TTAA	2 cut(s)	320, 352
Tru9I	TTAA	2 cut(s)	320, 352
TscAI	CASTG	1 cut(s)	303
TseI	GCWGC	1 cut(s)	148
TspDTI	ATGAA	1 cut(s)	110
TspRI	CASTG	1 cut(s)	303
XspI	CTAG	2 cut(s)	324, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.