gene silencing by RNA
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD07G1055500.v1.1 MD17G1114100.v1.1 |
| rosa_multiflora | Rmu_sc0002111.1_g000038 Rmu_sc0005223.1_g000024 Rmu_sc0005223.1_g000025 Rmu_sc0005664.1_g000044 Rmu_sc0009850.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00027310 Rroxscaffold_5G00355040 Rroxscaffold_7G00188050 Rroxscaffold_7G00199140 Rroxscaffold_7G00213780 |
| rosa_rugosa | Rorug03G0293000 |
| rosa_samantha | Rh5AG304200 Rh5AG409800 Rh5BG219300 Rh6BG266900 |
| rosa_wichuraiana | Rw4G016630 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 29 |
| AciI | CCGC | 1 cut(s) | 237 |
| AclWI | GGATC | 1 cut(s) | 204 |
| AcuI | CTGAAG | 1 cut(s) | 120 |
| AflII | CTTAAG | 1 cut(s) | 128 |
| AgsI | TTSAA | 3 cut(s) | 123, 172, 184 |
| AjnI | CCWGG | 1 cut(s) | 228 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 176, 208 |
| AluBI | AGCT | 4 cut(s) | 11, 127, 136, 211 |
| AluI | AGCT | 4 cut(s) | 11, 127, 136, 211 |
| Alw21I | GWGCWC | 1 cut(s) | 13 |
| Alw26I | GTCTC | 1 cut(s) | 267 |
| AlwI | GGATC | 1 cut(s) | 204 |
| AsuHPI | GGTGA | 2 cut(s) | 251, 269 |
| BanII | GRGCYC | 1 cut(s) | 13 |
| BbsI | GAAGAC | 1 cut(s) | 108 |
| Bbv12I | GWGCWC | 1 cut(s) | 13 |
| BccI | CCATC | 1 cut(s) | 143 |
| BciT130I | CCWGG | 1 cut(s) | 230 |
| BcoDI | GTCTC | 1 cut(s) | 267 |
| BfrI | CTTAAG | 1 cut(s) | 128 |
| Bme1390I | CCNGG | 1 cut(s) | 230 |
| BmrFI | CCNGG | 1 cut(s) | 230 |
| BpiI | GAAGAC | 1 cut(s) | 108 |
| BpuEI | CTTGAG | 1 cut(s) | 158 |
| Bse1I | ACTGG | 1 cut(s) | 43 |
| BseBI | CCWGG | 1 cut(s) | 230 |
| BseGI | GGATG | 1 cut(s) | 154 |
| BseNI | ACTGG | 1 cut(s) | 43 |
| BsiHKAI | GWGCWC | 1 cut(s) | 13 |
| BsmAI | GTCTC | 1 cut(s) | 267 |
| Bsp1286I | GDGCHC | 1 cut(s) | 13 |
| Bsp143I | GATC | 1 cut(s) | 196 |
| BspACI | CCGC | 1 cut(s) | 237 |
| BspPI | GGATC | 1 cut(s) | 204 |
| BspTI | CTTAAG | 1 cut(s) | 128 |
| BsrI | ACTGG | 1 cut(s) | 43 |
| BssMI | GATC | 1 cut(s) | 196 |
| Bst2UI | CCWGG | 1 cut(s) | 230 |
| Bst4CI | ACNGT | 1 cut(s) | 34 |
| BstAFI | CTTAAG | 1 cut(s) | 128 |
| BstC8I | GCNNGC | 1 cut(s) | 235 |
| BstF5I | GGATG | 1 cut(s) | 154 |
| BstKTI | GATC | 1 cut(s) | 199 |
| BstMAI | GTCTC | 1 cut(s) | 267 |
| BstMBI | GATC | 1 cut(s) | 196 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 133 |
| BstNI | CCWGG | 1 cut(s) | 230 |
| BstSCI | CCNGG | 1 cut(s) | 228 |
| BstV2I | GAAGAC | 1 cut(s) | 108 |
| BtsCI | GGATG | 1 cut(s) | 154 |
| BtsIMutI | CAGTG | 1 cut(s) | 39 |
| Cac8I | GCNNGC | 1 cut(s) | 235 |
| CviAII | CATG | 1 cut(s) | 277 |
| CviJI | RGCY | 5 cut(s) | 11, 127, 136, 211, 233 |
| CviKI_1 | RGCY | 5 cut(s) | 11, 127, 136, 211, 233 |
| DpnI | GATC | 1 cut(s) | 198 |
| DpnII | GATC | 1 cut(s) | 196 |
| Ecl136II | GAGCTC | 1 cut(s) | 11 |
| Eco24I | GRGCYC | 1 cut(s) | 13 |
| Eco53kI | GAGCTC | 1 cut(s) | 11 |
| Eco57I | CTGAAG | 1 cut(s) | 120 |
| EcoICRI | GAGCTC | 1 cut(s) | 11 |
| EcoRII | CCWGG | 1 cut(s) | 228 |
| EcoT38I | GRGCYC | 1 cut(s) | 13 |
| FaeI | CATG | 1 cut(s) | 280 |
| FaiI | YATR | 5 cut(s) | 29, 66, 68, 107, 278 |
| FatI | CATG | 1 cut(s) | 276 |
| FokI | GGATG | 1 cut(s) | 161 |
| FriOI | GRGCYC | 1 cut(s) | 13 |
| Hin1II | CATG | 1 cut(s) | 280 |
| HindIII | AAGCTT | 2 cut(s) | 125, 134 |
| HinfI | GANTC | 4 cut(s) | 39, 161, 242, 260 |
| HphI | GGTGA | 2 cut(s) | 251, 269 |
| Hpy188I | TCNGA | 2 cut(s) | 100, 201 |
| Hpy188III | TCNNGA | 1 cut(s) | 181 |
| HpyAV | CCTTC | 1 cut(s) | 121 |
| HpyCH4III | ACNGT | 1 cut(s) | 34 |
| HpyCH4V | TGCA | 1 cut(s) | 294 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 133 |
| Hsp92II | CATG | 1 cut(s) | 280 |
| Kzo9I | GATC | 1 cut(s) | 196 |
| LpnPI | CCDG | 4 cut(s) | 56, 215, 219, 242 |
| MaeIII | GTNAC | 1 cut(s) | 162 |
| MalI | GATC | 1 cut(s) | 198 |
| MboI | GATC | 1 cut(s) | 196 |
| MboII | GAAGA | 3 cut(s) | 71, 113, 237 |
| MhlI | GDGCHC | 1 cut(s) | 13 |
| MluCI | AATT | 1 cut(s) | 191 |
| MlyI | GAGTC | 3 cut(s) | 48, 170, 269 |
| MnlI | CCTC | 1 cut(s) | 133 |
| MseI | TTAA | 2 cut(s) | 129, 215 |
| MslI | CAYNNNNRTG | 1 cut(s) | 299 |
| MspCI | CTTAAG | 1 cut(s) | 128 |
| MspR9I | CCNGG | 1 cut(s) | 230 |
| MvaI | CCWGG | 1 cut(s) | 230 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 133 |
| NdeII | GATC | 1 cut(s) | 196 |
| NlaIII | CATG | 1 cut(s) | 280 |
| NmuCI | GTSAC | 1 cut(s) | 162 |
| PfeI | GAWTC | 1 cut(s) | 242 |
| PleI | GAGTC | 3 cut(s) | 47, 169, 268 |
| PpsI | GAGTC | 3 cut(s) | 47, 169, 268 |
| PsiI | TTATAA | 1 cut(s) | 29 |
| Psp124BI | GAGCTC | 1 cut(s) | 13 |
| Psp6I | CCWGG | 1 cut(s) | 228 |
| PspGI | CCWGG | 1 cut(s) | 228 |
| RseI | CAYNNNNRTG | 1 cut(s) | 299 |
| SacI | GAGCTC | 1 cut(s) | 13 |
| SaqAI | TTAA | 2 cut(s) | 129, 215 |
| Sau3AI | GATC | 1 cut(s) | 196 |
| SchI | GAGTC | 3 cut(s) | 48, 170, 269 |
| ScrFI | CCNGG | 1 cut(s) | 230 |
| SduI | GDGCHC | 1 cut(s) | 13 |
| SetI | ASST | 5 cut(s) | 13, 129, 138, 144, 213 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 299 |
| SmlI | CTYRAG | 2 cut(s) | 128, 137 |
| SmoI | CTYRAG | 2 cut(s) | 128, 137 |
| Sse9I | AATT | 1 cut(s) | 191 |
| SsiI | CCGC | 1 cut(s) | 237 |
| SstI | GAGCTC | 1 cut(s) | 13 |
| StyD4I | CCNGG | 1 cut(s) | 228 |
| TaaI | ACNGT | 1 cut(s) | 34 |
| TasI | AATT | 1 cut(s) | 191 |
| TfiI | GAWTC | 1 cut(s) | 242 |
| Tru1I | TTAA | 2 cut(s) | 129, 215 |
| Tru9I | TTAA | 2 cut(s) | 129, 215 |
| TscAI | CASTG | 1 cut(s) | 39 |
| TseFI | GTSAC | 1 cut(s) | 162 |
| Tsp45I | GTSAC | 1 cut(s) | 162 |
| TspDTI | ATGAA | 3 cut(s) | 17, 261, 265 |
| TspRI | CASTG | 1 cut(s) | 39 |
| Vha464I | CTTAAG | 1 cut(s) | 128 |