gene silencing by RNA
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD07G1055500.v1.1 MD17G1114100.v1.1 |
| rosa_multiflora | Rmu_sc0002111.1_g000038 Rmu_sc0005223.1_g000024 Rmu_sc0005223.1_g000025 Rmu_sc0005664.1_g000044 Rmu_sc0009850.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00027310 Rroxscaffold_5G00355040 Rroxscaffold_7G00188050 Rroxscaffold_7G00199140 Rroxscaffold_7G00213780 |
| rosa_rugosa | Rorug03G0293000 |
| rosa_samantha | Rh5AG304200 Rh5AG409800 Rh5BG219300 Rh6BG266900 |
| rosa_wichuraiana | Rw4G016630 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 138 |
| AcsI | RAATTY | 1 cut(s) | 251 |
| AflII | CTTAAG | 1 cut(s) | 62 |
| AgsI | TTSAA | 3 cut(s) | 57, 106, 118 |
| AjnI | CCWGG | 1 cut(s) | 162 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 110, 142 |
| AluBI | AGCT | 3 cut(s) | 61, 70, 145 |
| AluI | AGCT | 3 cut(s) | 61, 70, 145 |
| Alw26I | GTCTC | 2 cut(s) | 30, 198 |
| AlwI | GGATC | 1 cut(s) | 138 |
| ApoI | RAATTY | 1 cut(s) | 251 |
| BccI | CCATC | 1 cut(s) | 77 |
| BciT130I | CCWGG | 1 cut(s) | 164 |
| BcoDI | GTCTC | 2 cut(s) | 30, 198 |
| BfrI | CTTAAG | 1 cut(s) | 62 |
| Bme1390I | CCNGG | 1 cut(s) | 164 |
| BmrFI | CCNGG | 1 cut(s) | 164 |
| BmsI | GCATC | 1 cut(s) | 234 |
| BpmI | CTGGAG | 1 cut(s) | 54 |
| BpuEI | CTTGAG | 1 cut(s) | 92 |
| BseBI | CCWGG | 1 cut(s) | 164 |
| BseGI | GGATG | 2 cut(s) | 22, 88 |
| BsmAI | GTCTC | 2 cut(s) | 30, 198 |
| Bsp143I | GATC | 1 cut(s) | 130 |
| BspPI | GGATC | 1 cut(s) | 138 |
| BspTI | CTTAAG | 1 cut(s) | 62 |
| BssMI | GATC | 1 cut(s) | 130 |
| Bst2UI | CCWGG | 1 cut(s) | 164 |
| Bst4CI | ACNGT | 1 cut(s) | 102 |
| BstAFI | CTTAAG | 1 cut(s) | 62 |
| BstF5I | GGATG | 2 cut(s) | 22, 88 |
| BstKTI | GATC | 1 cut(s) | 133 |
| BstMAI | GTCTC | 2 cut(s) | 30, 198 |
| BstMBI | GATC | 1 cut(s) | 130 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 67 |
| BstNI | CCWGG | 1 cut(s) | 164 |
| BstSCI | CCNGG | 1 cut(s) | 162 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 170 |
| BtsCI | GGATG | 2 cut(s) | 22, 88 |
| CviAII | CATG | 1 cut(s) | 208 |
| CviJI | RGCY | 4 cut(s) | 61, 70, 145, 167 |
| CviKI_1 | RGCY | 4 cut(s) | 61, 70, 145, 167 |
| DpnI | GATC | 1 cut(s) | 132 |
| DpnII | GATC | 1 cut(s) | 130 |
| EcoRII | CCWGG | 1 cut(s) | 162 |
| FaeI | CATG | 1 cut(s) | 211 |
| FaiI | YATR | 2 cut(s) | 41, 209 |
| FatI | CATG | 1 cut(s) | 207 |
| FokI | GGATG | 2 cut(s) | 29, 95 |
| GsuI | CTGGAG | 1 cut(s) | 54 |
| Hin1II | CATG | 1 cut(s) | 211 |
| HindIII | AAGCTT | 2 cut(s) | 59, 68 |
| HinfI | GANTC | 1 cut(s) | 95 |
| Hpy188I | TCNGA | 1 cut(s) | 135 |
| Hpy188III | TCNNGA | 4 cut(s) | 8, 33, 115, 229 |
| HpyAV | CCTTC | 1 cut(s) | 55 |
| HpyCH4III | ACNGT | 1 cut(s) | 102 |
| HpyCH4V | TGCA | 1 cut(s) | 225 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 67 |
| Hsp92II | CATG | 1 cut(s) | 211 |
| Kzo9I | GATC | 1 cut(s) | 130 |
| LpnPI | CCDG | 4 cut(s) | 18, 149, 153, 176 |
| LweI | GCATC | 1 cut(s) | 234 |
| MaeIII | GTNAC | 1 cut(s) | 96 |
| MalI | GATC | 1 cut(s) | 132 |
| MboI | GATC | 1 cut(s) | 130 |
| MboII | GAAGA | 1 cut(s) | 168 |
| MluCI | AATT | 3 cut(s) | 22, 125, 251 |
| MlyI | GAGTC | 1 cut(s) | 104 |
| MnlI | CCTC | 1 cut(s) | 67 |
| MseI | TTAA | 2 cut(s) | 63, 149 |
| MspCI | CTTAAG | 1 cut(s) | 62 |
| MspR9I | CCNGG | 1 cut(s) | 164 |
| MvaI | CCWGG | 1 cut(s) | 164 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 67 |
| NdeII | GATC | 1 cut(s) | 130 |
| NlaIII | CATG | 1 cut(s) | 211 |
| NmuCI | GTSAC | 1 cut(s) | 96 |
| PleI | GAGTC | 1 cut(s) | 103 |
| PpsI | GAGTC | 1 cut(s) | 103 |
| Psp6I | CCWGG | 1 cut(s) | 162 |
| PspGI | CCWGG | 1 cut(s) | 162 |
| SaqAI | TTAA | 2 cut(s) | 63, 149 |
| Sau3AI | GATC | 1 cut(s) | 130 |
| SchI | GAGTC | 1 cut(s) | 104 |
| ScrFI | CCNGG | 1 cut(s) | 164 |
| SetI | ASST | 4 cut(s) | 63, 72, 78, 147 |
| SfaNI | GCATC | 1 cut(s) | 234 |
| SmlI | CTYRAG | 2 cut(s) | 62, 71 |
| SmoI | CTYRAG | 2 cut(s) | 62, 71 |
| Sse9I | AATT | 3 cut(s) | 22, 125, 251 |
| StyD4I | CCNGG | 1 cut(s) | 162 |
| TaaI | ACNGT | 1 cut(s) | 102 |
| TasI | AATT | 3 cut(s) | 22, 125, 251 |
| Tru1I | TTAA | 2 cut(s) | 63, 149 |
| Tru9I | TTAA | 2 cut(s) | 63, 149 |
| TseFI | GTSAC | 1 cut(s) | 96 |
| Tsp45I | GTSAC | 1 cut(s) | 96 |
| TspDTI | ATGAA | 2 cut(s) | 192, 196 |
| Vha464I | CTTAAG | 1 cut(s) | 62 |
| XapI | RAATTY | 1 cut(s) | 251 |