Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005223.1

Orthogroup ID

OG0013736

Physical Location & Seq

Genomic Coordinates Reverse (-)

87373 .. 89648

Gene Structure 2276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005223.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atgccattcctaaacgcctccaacccccttcacgatgccattgagaagctccagcgccttcatcgcaccgatgttgcgcgtggctcgcagcaccacccacccatctaccatgcgaacagagagttatgcgtcgcactagcgattgggaactctaccagagcctccggtatgctcgctacctgcatcatccaacccatcgatatgatcaaggttgctgatggcccgcaaaaacgcaagaaaggtgtgtttgggactaaaggtggcgataaagagtttatcatccgaagtaacttgcaatatgctgccctaagtgctcttagaagacttccattggatccaggaaacccagcttttttgtaccgtgctgttcaaggggtgtcatttgctgatcctgttgctgtgaggcatgctttggaaattctgtctgagttagccacaaaagacccttatgcagttgtgatgggcttaggtgatatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SH3_1 SH3_9

Protein Analysis

159

Amino Acids

17.3

Weight (kDa)

9.43

Isoelectric Point (pI)

39.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013736)

Species	Orthologous Gene IDs
malus_domestica	MD07G1055500.v1.1 MD17G1114100.v1.1
rosa_multiflora	Rmu_sc0002111.1_g000038 Rmu_sc0005223.1_g000024 Rmu_sc0005223.1_g000025 Rmu_sc0005664.1_g000044 Rmu_sc0009850.1_g000003
rosa_roxburghii	Rroxscaffold_1G00027310 Rroxscaffold_5G00355040 Rroxscaffold_7G00188050 Rroxscaffold_7G00199140 Rroxscaffold_7G00213780
rosa_rugosa	Rorug03G0293000
rosa_samantha	Rh5AG304200 Rh5AG409800 Rh5BG219300 Rh6BG266900
rosa_wichuraiana	Rw4G016630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	188
AccII	CGCG	1 cut(s)	79
AciI	CCGC	1 cut(s)	224
AclWI	GGATC	3 cut(s)	329, 342, 383
AcsI	RAATTY	1 cut(s)	417
AfaI	GTAC	1 cut(s)	359
AgsI	TTSAA	1 cut(s)	371
AjnI	CCWGG	1 cut(s)	337
AluBI	AGCT	2 cut(s)	49, 350
AluI	AGCT	2 cut(s)	49, 350
Alw21I	GWGCWC	1 cut(s)	316
AlwI	GGATC	3 cut(s)	329, 342, 383
AoxI	GGCC	1 cut(s)	220
ApeKI	GCWGC	2 cut(s)	88, 302
ApoI	RAATTY	1 cut(s)	417
AspLEI	GCGC	2 cut(s)	57, 79
AspS9I	GGNCC	1 cut(s)	221
BamHI	GGATCC	1 cut(s)	334
BbsI	GAAGAC	1 cut(s)	328
Bbv12I	GWGCWC	1 cut(s)	316
BbvI	GCAGC	2 cut(s)	100, 289
BccI	CCATC	4 cut(s)	110, 203, 212, 454
BciT130I	CCWGG	1 cut(s)	339
BclI	TGATCA	1 cut(s)	204
BfaI	CTAG	1 cut(s)	137
BfoI	RGCGCY	1 cut(s)	58
BfuAI	ACCTGC	1 cut(s)	188
BisI	GCNGC	2 cut(s)	89, 303
BlsI	GCNGC	2 cut(s)	90, 304
Bme1390I	CCNGG	1 cut(s)	339
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	1 cut(s)	336
BmrFI	CCNGG	1 cut(s)	339
BmsI	GCATC	2 cut(s)	25, 192
BpiI	GAAGAC	1 cut(s)	328
BpmI	CTGGAG	1 cut(s)	35
Bpu10I	CCTNAGC	1 cut(s)	466
Bsa29I	ATCGAT	1 cut(s)	198
BsaWI	WCCGGW	1 cut(s)	164
BseBI	CCWGG	1 cut(s)	339
BseCI	ATCGAT	1 cut(s)	198
BseGI	GGATG	2 cut(s)	186, 279
BseMII	CTCAG	1 cut(s)	417
BseXI	GCAGC	2 cut(s)	100, 289
BseYI	CCCAGC	1 cut(s)	346
Bsh1236I	CGCG	1 cut(s)	79
BshFI	GGCC	1 cut(s)	222
BshVI	ATCGAT	1 cut(s)	198
BsiHKAI	GWGCWC	1 cut(s)	316
BsiSI	CCGG	1 cut(s)	165
BslFI	GGGAC	1 cut(s)	265
BsmFI	GGGAC	1 cut(s)	265
BsnI	GGCC	1 cut(s)	222
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp143I	GATC	3 cut(s)	204, 334, 388
BspACI	CCGC	1 cut(s)	224
BspANI	GGCC	1 cut(s)	222
BspCNI	CTCAG	1 cut(s)	418
BspDI	ATCGAT	1 cut(s)	198
BspFNI	CGCG	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	336
BspMI	ACCTGC	1 cut(s)	188
BspPI	GGATC	3 cut(s)	329, 342, 383
BssMI	GATC	3 cut(s)	204, 334, 388
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	1 cut(s)	362
BstC8I	GCNNGC	4 cut(s)	86, 174, 224, 408
BstDEI	CTNAG	4 cut(s)	308, 317, 426, 466
BstF5I	GGATG	2 cut(s)	186, 279
BstFNI	CGCG	1 cut(s)	79
BstH2I	RGCGCY	1 cut(s)	58
BstHHI	GCGC	2 cut(s)	57, 79
BstKTI	GATC	3 cut(s)	207, 337, 391
BstMBI	GATC	3 cut(s)	204, 334, 388
BstMWI	GCNNNNNNNGC	3 cut(s)	63, 85, 311
BstNI	CCWGG	1 cut(s)	339
BstNSI	RCATGY	1 cut(s)	410
BstSCI	CCNGG	1 cut(s)	337
BstUI	CGCG	1 cut(s)	79
BstV1I	GCAGC	2 cut(s)	100, 289
BstV2I	GAAGAC	1 cut(s)	328
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
Bsu15I	ATCGAT	1 cut(s)	198
BsuRI	GGCC	1 cut(s)	222
BsuTUI	ATCGAT	1 cut(s)	198
BtgZI	GCGATG	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	186, 279
BveI	ACCTGC	1 cut(s)	188
Cac8I	GCNNGC	4 cut(s)	86, 174, 224, 408
CfoI	GCGC	2 cut(s)	57, 79
Cfr13I	GGNCC	1 cut(s)	221
ClaI	ATCGAT	1 cut(s)	198
CseI	GACGC	1 cut(s)	118
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	2 cut(s)	110, 407
CviJI	RGCY	7 cut(s)	49, 84, 161, 222, 350, 434, 465
CviKI_1	RGCY	7 cut(s)	49, 84, 161, 222, 350, 434, 465
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	4 cut(s)	308, 317, 426, 466
DpnI	GATC	3 cut(s)	206, 336, 390
DpnII	GATC	3 cut(s)	204, 334, 388
EcoRII	CCWGG	1 cut(s)	337
FaeI	CATG	2 cut(s)	113, 410
FaiI	YATR	7 cut(s)	111, 127, 170, 203, 300, 408, 450
FaqI	GGGAC	1 cut(s)	265
FatI	CATG	2 cut(s)	109, 406
FauI	CCCGC	1 cut(s)	231
FbaI	TGATCA	1 cut(s)	204
Fnu4HI	GCNGC	2 cut(s)	89, 303
FokI	GGATG	2 cut(s)	173, 266
Fsp4HI	GCNGC	2 cut(s)	89, 303
FspBI	CTAG	1 cut(s)	137
GlaI	GCGC	2 cut(s)	56, 78
GluI	GCNGC	2 cut(s)	89, 303
GsaI	CCCAGC	1 cut(s)	350
GsuI	CTGGAG	1 cut(s)	35
HaeII	RGCGCY	1 cut(s)	58
HaeIII	GGCC	1 cut(s)	222
HapII	CCGG	1 cut(s)	165
HgaI	GACGC	1 cut(s)	118
HhaI	GCGC	2 cut(s)	57, 79
Hin1II	CATG	2 cut(s)	113, 410
Hin6I	GCGC	2 cut(s)	55, 77
HinP1I	GCGC	2 cut(s)	55, 77
HpaII	CCGG	1 cut(s)	165
Hpy188I	TCNGA	2 cut(s)	284, 427
Hpy188III	TCNNGA	1 cut(s)	32
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	2 cut(s)	38, 68
HpyCH4III	ACNGT	1 cut(s)	362
HpyCH4V	TGCA	3 cut(s)	183, 295, 452
HpyF10VI	GCNNNNNNNGC	3 cut(s)	63, 85, 311
HpyF3I	CTNAG	4 cut(s)	308, 317, 426, 466
Hsp92II	CATG	2 cut(s)	113, 410
HspAI	GCGC	2 cut(s)	55, 77
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	3 cut(s)	204, 334, 388
LmnI	GCTCC	1 cut(s)	54
LpnPI	CCDG	8 cut(s)	65, 169, 178, 193, 324, 351, 360, 405
Lsp1109I	GCAGC	2 cut(s)	100, 289
LweI	GCATC	2 cut(s)	25, 192
MaeI	CTAG	1 cut(s)	137
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	3 cut(s)	206, 336, 390
MboI	GATC	3 cut(s)	204, 334, 388
MboII	GAAGA	1 cut(s)	333
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	1 cut(s)	316
MluCI	AATT	1 cut(s)	417
MmeI	TCCRAC	2 cut(s)	45, 214
MnlI	CCTC	3 cut(s)	28, 172, 396
MslI	CAYNNNNRTG	1 cut(s)	200
MspI	CCGG	1 cut(s)	165
MspR9I	CCNGG	1 cut(s)	339
MvaI	CCWGG	1 cut(s)	339
MvnI	CGCG	1 cut(s)	79
MwoI	GCNNNNNNNGC	3 cut(s)	63, 85, 311
NdeII	GATC	3 cut(s)	204, 334, 388
NlaIII	CATG	2 cut(s)	113, 410
NlaIV	GGNNCC	1 cut(s)	336
NspI	RCATGY	1 cut(s)	410
PaeI	GCATGC	1 cut(s)	410
PfoI	TCCNGGA	1 cut(s)	337
PkrI	GCNGC	2 cut(s)	90, 304
Psp6I	CCWGG	1 cut(s)	337
PspFI	CCCAGC	1 cut(s)	346
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	1 cut(s)	336
PspPI	GGNCC	1 cut(s)	221
PsuI	RGATCY	1 cut(s)	334
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
RseI	CAYNNNNRTG	1 cut(s)	200
SatI	GCNGC	2 cut(s)	89, 303
Sau3AI	GATC	3 cut(s)	204, 334, 388
Sau96I	GGNCC	1 cut(s)	221
ScrFI	CCNGG	1 cut(s)	339
SduI	GDGCHC	1 cut(s)	316
SetI	ASST	7 cut(s)	51, 182, 213, 244, 262, 352, 472
SfaNI	GCATC	2 cut(s)	25, 192
SmiMI	CAYNNNNRTG	1 cut(s)	200
SphI	GCATGC	1 cut(s)	410
Sse9I	AATT	1 cut(s)	417
SsiI	CCGC	1 cut(s)	224
SspMI	CTAG	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	337
TaaI	ACNGT	1 cut(s)	362
TaqI	TCGA	1 cut(s)	198
TasI	AATT	1 cut(s)	417
TseI	GCWGC	2 cut(s)	88, 302
TspDTI	ATGAA	1 cut(s)	50
XapI	RAATTY	1 cut(s)	417
XceI	RCATGY	1 cut(s)	410
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.