Rroxscaffold_5G00355040

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0013736
Physical Location & Seq
Forward (+)
33630086 .. 33632807
2722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00355040.1

Sequence Viewer

Length: 441 bp
ATGTTAGCCTCTCTCGTGGCCTCGAATTTATCCGACAATAATCCGTCCGGAGACATACCCTTCTCGGTTTCAAAGCTTAAGAACCTTGAGGTTTTTGATCTTTCTTGGAACCAGCTCACCGGTGAGATACCAAGGCTAATATCTTGGAATGAAGTTTTGCAGAAGACATTGCTAGCCAAAGCAATTGCAAGCAAGAGAGATGCTAACTTTCTAAAGGTTGTATCAAGCGCAATTATTGATAAGTTCATTGGTGAAAGTGCAAGATTGATAAGGGAAATGTTTGGTTATGCTTGTGATCACCAGATTGATGCTATTGGTGGATGGCATTTTAGCAAATGGACCAGTGCGGATTGTGAAATCCAGCGAACACTCATGGAATTGCCTAACCAGTTAGATGGATTTGATCAACTTGGGAAGGTATCAATGGCATCTAGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030162 GO:0030163 GO:0030312 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055044 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

146

Amino Acids

16.27

Weight (kDa)

6.1

Isoelectric Point (pI)

26.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 55 - 136 5.4e-08 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 47
AciI CCGC 1 cut(s) 347
AcsI RAATTY 1 cut(s) 25
AflII CTTAAG 1 cut(s) 77
AgeI ACCGGT 1 cut(s) 119
AgsI TTSAA 1 cut(s) 72
AluBI AGCT 2 cut(s) 76, 115
AluI AGCT 2 cut(s) 76, 115
Alw26I GTCTC 1 cut(s) 45
Aor13HI TCCGGA 1 cut(s) 47
AoxI GGCC 1 cut(s) 18
ApoI RAATTY 1 cut(s) 25
AsiGI ACCGGT 1 cut(s) 119
AspLEI GCGC 1 cut(s) 230
AspS9I GGNCC 1 cut(s) 339
AsuHPI GGTGA 4 cut(s) 109, 134, 263, 290
AsuNHI GCTAGC 1 cut(s) 172
AvaII GGWCC 1 cut(s) 339
BauI CACGAG 1 cut(s) 14
BbsI GAAGAC 1 cut(s) 170
BccI CCATC 2 cut(s) 315, 389
BclI TGATCA 2 cut(s) 295, 403
BcoDI GTCTC 1 cut(s) 45
BfaI CTAG 2 cut(s) 173, 432
BfrI CTTAAG 1 cut(s) 77
Bme18I GGWCC 1 cut(s) 339
BmgT120I GGNCC 1 cut(s) 339
BmiI GGNNCC 1 cut(s) 110
BmsI GCATC 3 cut(s) 190, 298, 437
BmtI GCTAGC 1 cut(s) 176
BpiI GAAGAC 1 cut(s) 170
BpuEI CTTGAG 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 131
BsaWI WCCGGW 2 cut(s) 47, 119
Bse118I RCCGGY 1 cut(s) 119
Bse1I ACTGG 2 cut(s) 342, 388
Bse3DI GCAATG 1 cut(s) 167
BseAI TCCGGA 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 131
BseGI GGATG 1 cut(s) 326
BseMI GCAATG 1 cut(s) 167
BseNI ACTGG 2 cut(s) 342, 388
BshFI GGCC 1 cut(s) 20
BshTI ACCGGT 1 cut(s) 119
BsiSI CCGG 2 cut(s) 48, 120
BsmAI GTCTC 1 cut(s) 45
BsnI GGCC 1 cut(s) 20
Bsp13I TCCGGA 1 cut(s) 47
Bsp143I GATC 3 cut(s) 97, 295, 403
BspACI CCGC 1 cut(s) 347
BspANI GGCC 1 cut(s) 20
BspEI TCCGGA 1 cut(s) 47
BspLI GGNNCC 1 cut(s) 110
BspOI GCTAGC 1 cut(s) 176
BspTI CTTAAG 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 167
BsrFI RCCGGY 1 cut(s) 119
BsrI ACTGG 2 cut(s) 342, 388
BssAI RCCGGY 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 131
BssMI GATC 3 cut(s) 97, 295, 403
BssSI CACGAG 1 cut(s) 14
BssT1I CCWWGG 1 cut(s) 131
Bst2BI CACGAG 1 cut(s) 14
BstAFI CTTAAG 1 cut(s) 77
BstC8I GCNNGC 2 cut(s) 174, 190
BstF5I GGATG 1 cut(s) 326
BstHHI GCGC 1 cut(s) 230
BstKTI GATC 3 cut(s) 100, 298, 406
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 3 cut(s) 97, 295, 403
BstV2I GAAGAC 1 cut(s) 170
BstXI CCANNNNNNTGG 1 cut(s) 395
BsuRI GGCC 1 cut(s) 20
BtsCI GGATG 1 cut(s) 326
BtsIMutI CAGTG 1 cut(s) 349
Cac8I GCNNGC 2 cut(s) 174, 190
CfoI GCGC 1 cut(s) 230
Cfr10I RCCGGY 1 cut(s) 119
Cfr13I GGNCC 1 cut(s) 339
CspAI ACCGGT 1 cut(s) 119
CviAII CATG 1 cut(s) 373
CviJI RGCY 6 cut(s) 8, 20, 76, 115, 136, 176
CviKI_1 RGCY 6 cut(s) 8, 20, 76, 115, 136, 176
DpnI GATC 3 cut(s) 99, 297, 405
DpnII GATC 3 cut(s) 97, 295, 403
Eco130I CCWWGG 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 339
EcoT14I CCWWGG 1 cut(s) 131
ErhI CCWWGG 1 cut(s) 131
FaeI CATG 1 cut(s) 376
FaiI YATR 3 cut(s) 56, 288, 374
FatI CATG 1 cut(s) 372
FbaI TGATCA 2 cut(s) 295, 403
FokI GGATG 1 cut(s) 333
FspBI CTAG 2 cut(s) 173, 432
GlaI GCGC 1 cut(s) 229
HaeIII GGCC 1 cut(s) 20
HapII CCGG 2 cut(s) 48, 120
HhaI GCGC 1 cut(s) 230
Hin1II CATG 1 cut(s) 376
Hin6I GCGC 1 cut(s) 228
HinP1I GCGC 1 cut(s) 228
HindIII AAGCTT 1 cut(s) 74
HpaII CCGG 2 cut(s) 48, 120
HphI GGTGA 4 cut(s) 109, 134, 263, 290
Hpy188I TCNGA 1 cut(s) 34
Hpy188III TCNNGA 1 cut(s) 48
HpyAV CCTTC 2 cut(s) 70, 409
HpyCH4V TGCA 3 cut(s) 160, 188, 260
Hsp92II CATG 1 cut(s) 376
HspAI GCGC 1 cut(s) 228
Kpn2I TCCGGA 1 cut(s) 47
Ksp22I TGATCA 2 cut(s) 295, 403
Kzo9I GATC 3 cut(s) 97, 295, 403
LpnPI CCDG 7 cut(s) 61, 125, 133, 314, 355, 374, 401
LweI GCATC 3 cut(s) 190, 298, 437
MaeI CTAG 2 cut(s) 173, 432
MalI GATC 3 cut(s) 99, 297, 405
MboI GATC 3 cut(s) 97, 295, 403
MboII GAAGA 1 cut(s) 175
MfeI CAATTG 1 cut(s) 183
MluCI AATT 4 cut(s) 25, 183, 231, 377
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 3 cut(s) 19, 31, 82
MroI TCCGGA 1 cut(s) 47
MseI TTAA 1 cut(s) 78
MspCI CTTAAG 1 cut(s) 77
MspI CCGG 2 cut(s) 48, 120
MunI CAATTG 1 cut(s) 183
NdeII GATC 3 cut(s) 97, 295, 403
NheI GCTAGC 1 cut(s) 172
NlaIII CATG 1 cut(s) 376
NlaIV GGNNCC 1 cut(s) 110
PinAI ACCGGT 1 cut(s) 119
PspN4I GGNNCC 1 cut(s) 110
PspPI GGNCC 1 cut(s) 339
SaqAI TTAA 1 cut(s) 78
Sau3AI GATC 3 cut(s) 97, 295, 403
Sau96I GGNCC 1 cut(s) 339
SetI ASST 6 cut(s) 78, 87, 93, 117, 219, 420
SfaNI GCATC 3 cut(s) 190, 298, 437
SgrAI CRCCGGYG 1 cut(s) 119
SinI GGWCC 1 cut(s) 339
SmlI CTYRAG 2 cut(s) 77, 86
SmoI CTYRAG 2 cut(s) 77, 86
Sse9I AATT 4 cut(s) 25, 183, 231, 377
SsiI CCGC 1 cut(s) 347
SspMI CTAG 2 cut(s) 173, 432
StyI CCWWGG 1 cut(s) 131
TaqI TCGA 1 cut(s) 23
TasI AATT 4 cut(s) 25, 183, 231, 377
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TscAI CASTG 1 cut(s) 349
TspDTI ATGAA 2 cut(s) 165, 235
TspGWI ACGGA 1 cut(s) 33
TspRI CASTG 1 cut(s) 349
Vha464I CTTAAG 1 cut(s) 77
VpaK11BI GGWCC 1 cut(s) 339
XapI RAATTY 1 cut(s) 25
XspI CTAG 2 cut(s) 173, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.