Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005223.1

Orthogroup ID

OG0013736

Physical Location & Seq

Genomic Coordinates Forward (+)

82544 .. 86581

Gene Structure 4038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005223.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ctgaatggcctagcttgcaaggaccccaagacagttaaagccaacgatttttcatttggtgggcttcacttagcagccaatacatcaaacccaattgggtcaagtgtgacaccggtgactgtatcccaacttccaggactcaatactcttggcatttcactagtccgcatcgactatgcaccatcaggcatcgaccctccccacactcatcctcgtgcctctgaaatcttgaccatcctcgaaggcagccttgaagtcgggttcgtaacgtccagccctgaaaatcgtcacatcaccaaggcgttgcagaagggcgatgtgtttgttttcccaatcggactcgtccactaccagagaaatgtaggaactggcaatgctgttgctattgccgccttgagcagccaaaatcctggtgtggtaataattgcaagtgctgtctttgggtccaggcctagtattggtagtgagattctcgtgaaggctttacaagttgatcaaggggttgctgatggcccgcaaaaacgcaagaaaggtgtgtttgggactaaaggtggcgataaagagtttatcatccgaagtaacttgcaatatgctgccctaagtgctcttagaagacttccattggatccaggaaacccagcttttttgtaccgtgctgttcaaggggtgtcatttgctgatcctgttgctgtgaggcatgctttggaaattctgtctgagttagccacaaaagacccttatgcagttagcttttgtggtgtttatgcttctaatggttttgactttattattgcagggaaacatgcagagcctggaggaatttatcttacaataatccttctggagttctcggtttcaaagcttaagaaccttgaggttttgaatttgaagaacaatcagttgactggtcctatcgctacaactcttacccaaattccaaaccttagaactctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

318

Amino Acids

33.62

Weight (kDa)

9.15

Isoelectric Point (pI)

37.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013736)

Species	Orthologous Gene IDs
malus_domestica	MD07G1055500.v1.1 MD17G1114100.v1.1
rosa_multiflora	Rmu_sc0002111.1_g000038 Rmu_sc0005223.1_g000024 Rmu_sc0005223.1_g000025 Rmu_sc0005664.1_g000044 Rmu_sc0009850.1_g000003
rosa_roxburghii	Rroxscaffold_1G00027310 Rroxscaffold_5G00355040 Rroxscaffold_7G00188050 Rroxscaffold_7G00199140 Rroxscaffold_7G00213780
rosa_rugosa	Rorug03G0293000
rosa_samantha	Rh5AG304200 Rh5AG409800 Rh5BG219300 Rh6BG266900
rosa_wichuraiana	Rw4G016630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	166, 390, 515
AclWI	GGATC	3 cut(s)	620, 633, 674
AcsI	RAATTY	4 cut(s)	708, 819, 883, 933
AfaI	GTAC	1 cut(s)	650
AfiI	CCNNNNNNNGG	1 cut(s)	458
AflII	CTTAAG	1 cut(s)	863
AgeI	ACCGGT	1 cut(s)	112
AgsI	TTSAA	5 cut(s)	254, 662, 858, 883, 889
AhlI	ACTAGT	1 cut(s)	160
AjnI	CCWGG	5 cut(s)	133, 409, 446, 628, 811
AluBI	AGCT	4 cut(s)	14, 641, 750, 862
AluI	AGCT	4 cut(s)	14, 641, 750, 862
Alw21I	GWGCWC	1 cut(s)	607
AlwI	GGATC	3 cut(s)	620, 633, 674
AlwNI	CAGNNNCTG	1 cut(s)	812
AoxI	GGCC	3 cut(s)	7, 449, 511
ApeKI	GCWGC	4 cut(s)	74, 246, 399, 593
ApoI	RAATTY	4 cut(s)	708, 819, 883, 933
AsiGI	ACCGGT	1 cut(s)	112
AspS9I	GGNCC	4 cut(s)	22, 444, 512, 908
AsuHPI	GGTGA	2 cut(s)	127, 286
AvaII	GGWCC	3 cut(s)	22, 444, 908
BamHI	GGATCC	1 cut(s)	625
BarI	GAAGNNNNNNTAC	2 cut(s)	114, 146
BauI	CACGAG	2 cut(s)	213, 473
BbsI	GAAGAC	1 cut(s)	619
Bbv12I	GWGCWC	1 cut(s)	607
BbvI	GCAGC	4 cut(s)	86, 258, 411, 580
BccI	CCATC	3 cut(s)	190, 242, 503
BciT130I	CCWGG	5 cut(s)	135, 411, 448, 630, 813
BciVI	GTATCC	1 cut(s)	133
BclI	TGATCA	1 cut(s)	493
BcuI	ACTAGT	1 cut(s)	160
BfaI	CTAG	3 cut(s)	11, 161, 453
BfrI	CTTAAG	1 cut(s)	863
BfuI	GTATCC	1 cut(s)	133
BisI	GCNGC	5 cut(s)	75, 247, 390, 400, 594
BlsI	GCNGC	5 cut(s)	76, 248, 391, 401, 595
Bme1390I	CCNGG	5 cut(s)	135, 411, 448, 630, 813
Bme18I	GGWCC	3 cut(s)	22, 444, 908
BmgT120I	GGNCC	4 cut(s)	22, 444, 512, 908
BmiI	GGNNCC	3 cut(s)	24, 445, 627
BmrFI	CCNGG	5 cut(s)	135, 411, 448, 630, 813
BmsI	GCATC	2 cut(s)	177, 198
BpiI	GAAGAC	1 cut(s)	619
BpmI	CTGGAG	2 cut(s)	834, 863
BpuEI	CTTGAG	2 cut(s)	415, 893
BsaJI	CCNNGG	1 cut(s)	297
BsaWI	WCCGGW	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	1 cut(s)	458
Bse118I	RCCGGY	1 cut(s)	112
Bse1I	ACTGG	2 cut(s)	373, 910
Bse3DI	GCAATG	1 cut(s)	379
BseBI	CCWGG	5 cut(s)	135, 411, 448, 630, 813
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	3 cut(s)	208, 234, 570
BseLI	CCNNNNNNNGG	1 cut(s)	458
BseMI	GCAATG	1 cut(s)	379
BseMII	CTCAG	1 cut(s)	708
BseNI	ACTGG	2 cut(s)	373, 910
BseXI	GCAGC	4 cut(s)	86, 258, 411, 580
BseYI	CCCAGC	1 cut(s)	637
BshFI	GGCC	3 cut(s)	9, 451, 513
BshTI	ACCGGT	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	607
BsiSI	CCGG	1 cut(s)	113
BslFI	GGGAC	1 cut(s)	556
BslI	CCNNNNNNNGG	1 cut(s)	458
BsmFI	GGGAC	1 cut(s)	556
BsnI	GGCC	3 cut(s)	9, 451, 513
Bsp1286I	GDGCHC	1 cut(s)	607
Bsp143I	GATC	3 cut(s)	493, 625, 679
BspACI	CCGC	3 cut(s)	166, 390, 515
BspANI	GGCC	3 cut(s)	9, 451, 513
BspCNI	CTCAG	1 cut(s)	709
BspLI	GGNNCC	3 cut(s)	24, 445, 627
BspPI	GGATC	3 cut(s)	620, 633, 674
BspTI	CTTAAG	1 cut(s)	863
BsrDI	GCAATG	1 cut(s)	379
BsrFI	RCCGGY	1 cut(s)	112
BsrI	ACTGG	2 cut(s)	373, 910
BssAI	RCCGGY	1 cut(s)	112
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	3 cut(s)	493, 625, 679
BssSI	CACGAG	2 cut(s)	213, 473
BssT1I	CCWWGG	1 cut(s)	297
Bst2BI	CACGAG	2 cut(s)	213, 473
Bst2UI	CCWGG	5 cut(s)	135, 411, 448, 630, 813
Bst4CI	ACNGT	3 cut(s)	34, 121, 653
BstAFI	CTTAAG	1 cut(s)	863
BstC8I	GCNNGC	3 cut(s)	16, 515, 699
BstDEI	CTNAG	5 cut(s)	70, 599, 608, 717, 944
BstF5I	GGATG	3 cut(s)	208, 234, 570
BstKTI	GATC	3 cut(s)	496, 628, 682
BstMBI	GATC	3 cut(s)	493, 625, 679
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 389, 602
BstNI	CCWGG	5 cut(s)	135, 411, 448, 630, 813
BstNSI	RCATGY	2 cut(s)	701, 806
BstSCI	CCNGG	5 cut(s)	133, 409, 446, 628, 811
BstV1I	GCAGC	4 cut(s)	86, 258, 411, 580
BstV2I	GAAGAC	1 cut(s)	619
BstX2I	RGATCY	1 cut(s)	625
BstXI	CCANNNNNNTGG	1 cut(s)	410
BstYI	RGATCY	1 cut(s)	625
BsuI	GTATCC	1 cut(s)	133
BsuRI	GGCC	3 cut(s)	9, 451, 513
BtgZI	GCGATG	1 cut(s)	330
BtsCI	GGATG	3 cut(s)	208, 234, 570
Cac8I	GCNNGC	3 cut(s)	16, 515, 699
CaiI	CAGNNNCTG	1 cut(s)	812
Cfr10I	RCCGGY	1 cut(s)	112
Cfr13I	GGNCC	4 cut(s)	22, 444, 512, 908
Csp6I	GTAC	1 cut(s)	649
CspAI	ACCGGT	1 cut(s)	112
CviAII	CATG	2 cut(s)	698, 803
CviQI	GTAC	1 cut(s)	649
DdeI	CTNAG	5 cut(s)	70, 599, 608, 717, 944
DpnI	GATC	3 cut(s)	495, 627, 681
DpnII	GATC	3 cut(s)	493, 625, 679
Eco130I	CCWWGG	1 cut(s)	297
Eco147I	AGGCCT	1 cut(s)	451
Eco47I	GGWCC	3 cut(s)	22, 444, 908
EcoO109I	RGGNCCY	1 cut(s)	22
EcoRII	CCWGG	5 cut(s)	133, 409, 446, 628, 811
EcoT14I	CCWWGG	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	2 cut(s)	701, 806
FaiI	YATR	6 cut(s)	177, 591, 699, 741, 765, 804
FalI	AAGNNNNNCTT	2 cut(s)	234, 266
FaqI	GGGAC	1 cut(s)	556
FatI	CATG	2 cut(s)	697, 802
FauI	CCCGC	1 cut(s)	522
FbaI	TGATCA	1 cut(s)	493
Fnu4HI	GCNGC	5 cut(s)	75, 247, 390, 400, 594
FokI	GGATG	3 cut(s)	195, 221, 557
Fsp4HI	GCNGC	5 cut(s)	75, 247, 390, 400, 594
FspBI	CTAG	3 cut(s)	11, 161, 453
GluI	GCNGC	5 cut(s)	75, 247, 390, 400, 594
GsaI	CCCAGC	1 cut(s)	641
GsuI	CTGGAG	2 cut(s)	834, 863
HaeIII	GGCC	3 cut(s)	9, 451, 513
HapII	CCGG	1 cut(s)	113
Hin1II	CATG	2 cut(s)	701, 806
HincII	GTYRAC	1 cut(s)	903
HindII	GTYRAC	1 cut(s)	903
HindIII	AAGCTT	1 cut(s)	860
HinfI	GANTC	3 cut(s)	138, 339, 469
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	2 cut(s)	127, 286
Hpy166II	GTNNAC	2 cut(s)	346, 903
Hpy188I	TCNGA	4 cut(s)	223, 338, 575, 718
Hpy188III	TCNNGA	3 cut(s)	229, 475, 842
Hpy8I	GTNNAC	2 cut(s)	346, 903
HpyAV	CCTTC	4 cut(s)	236, 304, 472, 848
HpyCH4III	ACNGT	3 cut(s)	34, 121, 653
HpyCH4IV	ACGT	1 cut(s)	269
HpyCH4V	TGCA	8 cut(s)	18, 179, 307, 428, 586, 743, 794, 806
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 389, 602
HpyF3I	CTNAG	5 cut(s)	70, 599, 608, 717, 944
HpySE526I	ACGT	1 cut(s)	269
Hsp92II	CATG	2 cut(s)	701, 806
Ksp22I	TGATCA	1 cut(s)	493
Kzo9I	GATC	3 cut(s)	493, 625, 679
Lsp1109I	GCAGC	4 cut(s)	86, 258, 411, 580
LweI	GCATC	2 cut(s)	177, 198
MaeI	CTAG	3 cut(s)	11, 161, 453
MaeII	ACGT	1 cut(s)	269
MaeIII	GTNAC	5 cut(s)	106, 115, 265, 287, 578
MalI	GATC	3 cut(s)	495, 627, 681
MboI	GATC	3 cut(s)	493, 625, 679
MboII	GAAGA	2 cut(s)	624, 901
MfeI	CAATTG	1 cut(s)	93
MflI	RGATCY	1 cut(s)	625
MhlI	GDGCHC	1 cut(s)	607
MluCI	AATT	6 cut(s)	93, 423, 708, 819, 883, 933
MlyI	GAGTC	2 cut(s)	132, 333
MnlI	CCTC	7 cut(s)	207, 222, 229, 248, 687, 809, 868
MseI	TTAA	2 cut(s)	36, 864
MslI	CAYNNNNRTG	1 cut(s)	213
MspCI	CTTAAG	1 cut(s)	863
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	5 cut(s)	135, 411, 448, 630, 813
MunI	CAATTG	1 cut(s)	93
MvaI	CCWGG	5 cut(s)	135, 411, 448, 630, 813
MwoI	GCNNNNNNNGC	3 cut(s)	15, 389, 602
NdeII	GATC	3 cut(s)	493, 625, 679
NlaIII	CATG	2 cut(s)	701, 806
NlaIV	GGNNCC	3 cut(s)	24, 445, 627
NmuCI	GTSAC	3 cut(s)	106, 115, 287
NspI	RCATGY	2 cut(s)	701, 806
PaeI	GCATGC	1 cut(s)	701
PceI	AGGCCT	1 cut(s)	451
PfeI	GAWTC	1 cut(s)	469
PfoI	TCCNGGA	2 cut(s)	133, 628
PinAI	ACCGGT	1 cut(s)	112
PkrI	GCNGC	5 cut(s)	76, 248, 391, 401, 595
PleI	GAGTC	2 cut(s)	132, 333
PpsI	GAGTC	2 cut(s)	132, 333
PpuMI	RGGWCCY	1 cut(s)	22
Psp5II	RGGWCCY	1 cut(s)	22
Psp6I	CCWGG	5 cut(s)	133, 409, 446, 628, 811
PspFI	CCCAGC	1 cut(s)	637
PspGI	CCWGG	5 cut(s)	133, 409, 446, 628, 811
PspN4I	GGNNCC	3 cut(s)	24, 445, 627
PspPI	GGNCC	4 cut(s)	22, 444, 512, 908
PspPPI	RGGWCCY	1 cut(s)	22
PstNI	CAGNNNCTG	1 cut(s)	812
PsuI	RGATCY	1 cut(s)	625
RsaI	GTAC	1 cut(s)	650
RsaNI	GTAC	1 cut(s)	649
RseI	CAYNNNNRTG	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	36, 864
SatI	GCNGC	5 cut(s)	75, 247, 390, 400, 594
Sau3AI	GATC	3 cut(s)	493, 625, 679
Sau96I	GGNCC	4 cut(s)	22, 444, 512, 908
SchI	GAGTC	2 cut(s)	132, 333
ScrFI	CCNGG	5 cut(s)	135, 411, 448, 630, 813
SduI	GDGCHC	1 cut(s)	607
SfaNI	GCATC	2 cut(s)	177, 198
SgrAI	CRCCGGYG	1 cut(s)	112
SinI	GGWCC	3 cut(s)	22, 444, 908
SmiMI	CAYNNNNRTG	1 cut(s)	213
SmlI	CTYRAG	3 cut(s)	394, 863, 872
SmoI	CTYRAG	3 cut(s)	394, 863, 872
SpeI	ACTAGT	1 cut(s)	160
SphI	GCATGC	1 cut(s)	701
Sse9I	AATT	6 cut(s)	93, 423, 708, 819, 883, 933
SseBI	AGGCCT	1 cut(s)	451
SsiI	CCGC	3 cut(s)	166, 390, 515
SspMI	CTAG	3 cut(s)	11, 161, 453
StuI	AGGCCT	1 cut(s)	451
StyD4I	CCNGG	5 cut(s)	133, 409, 446, 628, 811
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	3 cut(s)	34, 121, 653
TaiI	ACGT	1 cut(s)	272
TaqI	TCGA	3 cut(s)	171, 192, 240
TasI	AATT	6 cut(s)	93, 423, 708, 819, 883, 933
TauI	GCSGC	1 cut(s)	392
TfiI	GAWTC	1 cut(s)	469
Tru1I	TTAA	2 cut(s)	36, 864
Tru9I	TTAA	2 cut(s)	36, 864
TseFI	GTSAC	3 cut(s)	106, 115, 287
TseI	GCWGC	4 cut(s)	74, 246, 399, 593
Tsp45I	GTSAC	3 cut(s)	106, 115, 287
TspDTI	ATGAA	1 cut(s)	42
Vha464I	CTTAAG	1 cut(s)	863
VpaK11BI	GGWCC	3 cut(s)	22, 444, 908
XapI	RAATTY	4 cut(s)	708, 819, 883, 933
XceI	RCATGY	2 cut(s)	701, 806
XspI	CTAG	3 cut(s)	11, 161, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.