MD17G1156800.v1.1

Vacuolar protein sorting-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0001657
Physical Location & Seq
Forward (+)
15074826 .. 15106102
31277 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1156800.v1.1.491

Sequence Viewer

Length: 10419 bp
ATGACGATGTTTGAAAGAGTTGTGAGTCAGGTGATTTTGGGCTATCTGGGTCGGTACTTCAAAGATATTCAGAAACACCAGCTGAAGATCACCCTTTGGAAAGGGGAAGTGTTCTTGGAAAATGTGGAGCTAAGTCTTGAAGCATTTGATTATCTTCAGTTGCCTTTTGCTTTAAAAGAAGGCCGGGTGGGAAAGTTAAGCATCAAAATTCCTTGGAAGAAGCTTGGTTGGGACCCCATTGAAATTATTTTAGAAGATGTCTTTCTTTGTGCATCCCAACGGGATGATCAAGAGTGGAGTTCGGATGAAGTTGAAAGACGAGAGCTTGCTTGGAAAAAGGCCAAACTTGCTGCAGCAGAGTTGGGAAAACTATCAAAACGTGTTTCCGAAAATCAGGCTGGGCTTATATCGTATATTTCTGCTAAGGTTCTTGACAGCATCCAAGTGTCAATCAGAGATTTTCATATCTTGTACCATCACAAGCTCAGTGACTCGGCATATACTGTATTTGGGTTGAAGTTATCCAGCTTGAGGACAATGAAGCAAACTCCTTTAGGGCCATCAAGTGGAAGAGGGGGCCAAGTTAATAAAGTTGTGGAGATTACGGGTTTGGAATTTTACTGTGGCACATTTTGTGGAGCGGTCGAATTGATGACTATGAACAATGGTGGGGACTCCAAACTGTGGCACAATACAAGACCTGATGGGGAGAAATATGACTCAATATTGTCTCCTTGTGATGTTTCCATGTCACTTTCGTTGCATCTCTTCTATCTGTCTGTCAACAGATCAGGAGAGCTTGATAACAATACTCCACAGTACTCTATCACCGCTGAGATAACTGACTTGGTGATGTCTTTAAATGAGGTTCAGTTGCAACAAATCTTAATTCTTTGGGATTTTTTAGGCACGTGTGAATTAAGAAATAAGTATGGGCGTTATTGTCCCTGGTATAGTCCGTTATCAACAAAAATGAAGGGTTGGCAATTGCAGTGGTGGCATTATGCGCAAGAATCTGTTCTATCAGATGTTCATAAGAGATTAAAGAAAAGCTCATGGAGATATTTTGGACAGAGACTAAGTTCTTGTCGGAAATACGTTAACCTATATAAGGCTAAGCTGAATTTTCTTCGCCATGATCAGCCAATTGACGAGAGTACTCAATGGGAATTGGAGCAAATGGAGAAAGAATTGGACATTGATGATATTTTAAGTTACAGGTCTACTGCTGAATGTGAGCTGCAGGAAATTTTGTCGAACTCTTTAACTTCAAACACAAATAATGATGAGCATTCAACTGGCAAATCCCGGGGATGGTTGAACTGGCTATCCCGTGGCATGCTTGGTGCTGGTGGAACAGATGATTTGGGTCAATTTTCTGGTGTTGTTTCTGATGAAGTTATTCAGGATATATGTGAGGCCACAGAGTTCAATCCTCCAGTTTTATACAATGGGGATGTTCGGGCAAATGATAAAATCAGTATATGTGCACTCCAGTTCAGCATTCATCGGATTTCTGCAACACTAAGGAACATGAAATATGGTCAAGAAATTTCTGAGACAATGTTGAATGGGGTGATTATTGAGTGCAAGTTTTGGGAAGAATCTGCAACCATTTTTTCCGTTGTCCAATCAGGCCAGATGGTTTATCCTTGTAGCAAGAAAGTCATTCTGCAGATGAGACAGCCTACTATTGAGACGGAAGTATTAGACAATGAGCATCCATCCTGTAGATTGCAAGTGGATGTATCACCAAACCTTGAGGTTGAATTGTGTATTAAGGGAATGCTTCAGCCATTGGAAGTTAATTTTGATGCAGAATTTTTCCTAAACTTGATGGACTTTTTTGGAGTTTTAAATTCCTTTGAAGGTCAGCATGGAAGGGTTCTCTTGTCACTAAATGGGATAGAAAATGTAAATGGTCGATTGTTATCAAAAGCTGAATACATTTTATCCCATCTTAGGAAAGTTGTGTGGGATTTTAGTATCATCAATATTATCATAAATGTTCCTTGGAGAGATGCAATACCAGAGCAGCATAACTTGGTAATTGAAGCAGGCTCCCTTATTTTTATGACTAGATGTGATATTGGATCTCATCCATCAGATGATGGACAATCATATACTTTCAAGAACTTCTTAACTTCGGTTTTCAAGTCTTATATTCCTTTGAGCTTTCAACTTAAAGATCTATACGATCACTTCGAGGTCAAGTTAAATGATTTTGAGATGAAGATGATTATGCCTTCTCATTCTTCTCCAGTCTCTATTTTGGAGAAACTTAGCACTTCTATCTCTTTGGAACGTTGCTTGATCCAAGATGAATCAGTACTGAAACAGTTGGAGGTGTACATCAATACATCATCACTGAATGCACACTTTTCTCCATCTATATATGCTGAAATTCTGGAATTGATTGCATACTTAGGTGCTCTGCAGCCAGCTCTATCTTTAGAAACTATTGATCCACTTAAAGTCATATCCAATGGATCAAGGACGGCTGTTTTTGGGTTCTCTACCAATGTCAAACTGGAGACAGTCAGCTTTCAAGTAGAACTTGAAAATGAGAAAGAAAATAGTTCATCCATCATGCTTGCTTGCCAACAATTAGATATCAGATATGCTCTTACAGAGCTTGAGGAGTGCTGGATCTCTATGAAAGCATTAAGTACCACTTTGCCTTTGAATGGTGAAAGTGAGAGCCATATTCTGTATTCATCTGGAAATCAGTCTTCTACAAATGCTTTACATCAACGTAATACTGGGTTTAGCAACAGCAGTGATGATTTTGCCACAAACATTGAAAATACTGAACCCTGCTTTATTTTACAGTATGAGTCTCTTAGGAATGAGTCAGTTCGCCAAAAATGTAGAATATGCTTGAATAACACTGATATCCACTGCTACCCGTATGTAATCAGACTGTTGATTGAATTTTTTGATAAGCTAGCTGCATATGGTGCATCTAATTATGGTATGAACTCCTTTAGCTCATCTGTGGATGCTGGGAATCCAAACAAGGTTGGTGGTTTTGGGTTTGAAAGGTTTGGTTTCTCAAACTTCTTGGAAAGTGGTTCCTGTGAGCATGCAAGCATACCTGTAGATCATTTTCCTTTTGTTACACTATGCAATTCTGGTTCCCTTGGTAGCCTTGAAAGTTCTTTACTTTATGCCAGTCATGACTGGAGAAAATATTTCACTTTGAAGGACAGCAGAATCATCAGTCCACAATCCAACACAAAGAAGGTATCTAAATATTTTCATGCCACACCATTAGAATCCACATTTATTGCTGCAGCATCTGATGTGGATGGGAGTTCTGCTGACAGTGGTACTGTATTTGTTATTGATTTAGATCTGTGTGGAATCAGAGTGCATTTTCATGATTCCTCATGCATTATTGGAACAATTTCCCTGCCTACATCTCACTCATCTGTAATCATTTCTGAAGACAACTTTGACATCTTAAGTTCTGCAGAGGGATTAGTTCTCACGTCATCTTGGTGGCCACAGAACTTACGTGAGTTTCTATGGGGGCCCTCACTCCCGAGTTTATCTCCTATTTTAAACCTACGAGTGAGGAAAGGAAGCTGTGGGCCATTGCGTTCTCGCATTGAAGTATGCTTCAGCATTCAGCATGTATATTGTGTTTTACCTCCCGAGTATCTGGCAATAATAATTGGTTACTTTTTGTTGCCTGATTGGAGTTCAGATTCAACTGAGCAGCATGTCACCGTATCGCATGAGTACACTGGAACTGAAAATGAGTGTTCACTTGCATATAAAATTGAGATACTAGACTGTACTTTGATAGTGCCCATCAACAGCAATGAGGGTCAGTTTCTAAAGGCAGAACTTCAGCAGTTGTATTGTAGCTTTATTCATCGCAGCAGTTTAACTAATGTATTGAAGGATATTCCTCCTGAATGTTGGGTTCCCGGGCATAAACTTTCAGAAAGAAATCACTGTTTGAATTTGTTTGGACGAGACTTGCTCCTATCATTCCTCTCTTTCAAGGACGATGAATGCGGTGTCTCAAAGTTTGATCAAGATGCTGATTGTGTAGACATTCCATTAGTTGTACCCTTATGTGCTGACGTTTGGGTCAAGATACCTTGTGAAAATGAATTATCAAGTTCCTCAACCATCTGTATCATGACGAGGATTGGGTACTGTCAACTTATGGTTGAGGGTGCTCACTTTTTTTGTGGATTTGAGGGACTAATTGATGTCATAAATGAATTTTCCCAAGTTTCTGATTTATCGAAATGTTTCAAATCTGATGTTCCACAGTTTCTTCAGTTAAAGAGGTGCCTAGAACAGAATAATGCAGTTACACCTGTTGTTTCAAGCATTACATTTTCAGAAGTTAAATGCTATTGCAAATCATTGTCGATACAGTTAAATGGCTGCAGAAGAGACTTGAAAGAACCTATAGCTAAGGCTGAAATGCAATTTATGTGTTCTGCATCATTGAGAGATGACATTCTCTTAAGTGTTGTGCTTAGCTTTTCCTCATTGGCATTATATTCTTTACCTGGTTCTGTTGTATTAGCAAGATTCAAATCCACTTCAACCTCATCAGTTCTTGACTTTTCTCTTTCAAAATCAAATGAAGGTGGGAATGAGCTGCTGGTTTCTTTGCCTTCTGTTGATGTGTGGTTATATTTGTCTTACTGGACTGATGTAATTGACTGTTTGAAATCTTATCCGGGACATTCATCCCCAACTACACCTGACAACTTAAAGCAGGAGGCCGATGTTCTGATTGTTAGGTCAGAAAATATTTGCATAACATTTCACTTTCCTGTCTGGATTGGTGATGAAGGTTGGGGGGAATATCAGGTAGATGAAGATCGTGTCGAGGGTAATCAAAATGATTTATCTGACTTGGTCAAAGGAAAAAACTTTAGATGCCTTGCGGTTACTTTATGCAGTAAAAGTAGTGAACTTTTTGTTGATGCAAGAAGTGTGAAAGTCAAGTCCGACATGGAAAAACTGAATGGTACGGTATTGCTAAGCGAGGACAAAAGTGTTCTATCATGGCCTCTTTTCCAGATATGTCAGGGTACTTTTGAAGCTGAGATTAACCAGAATGAGCTTGTGCATGTTGAAGTAGATGCTCGATGTGATCATTTAGATGTATGGATTTCACACAGCATTCTCCACTTTTGGCATGGCGTACCATTCACTGTTTCTGAAGGAGGGCCTTCTCAGTTTTCTTATGGCGGAATTGCTTTTAAAGTCCAATTTAGAAAGGTTTCTTTTCTTCTAAGTGATGGAAGGTGGAGTTGTAGTGGGCCGCTGTTTCAAATTCTTATGGGTAACATCCTCTTTTGTGGTAATGTGACTCAAAAAAACCTCAAAGGTTCAGTCAGTGGTGACCTTCAAGTGAACTACAATAACATTCACAAGGTCTTCTGGGAGCCTTTTGTCGAGCCTTGGAAGTTTGAGGTCGATGTGATTAGAAAGCAAGGGATGAGTCTCAACAGCTCCATGTTGACAGATGTCAATCTCAAATCGCCTGCGCACCTTAATCTGAACTTCACTGAATCCCTAATAGAGTGTGTTTTCAGGGCATTTGAGATGATTAAGGATGCTTGGGTTCTGATGGGTACAAATGATCTTCCCGAAAGCCAAATTTTTTTAAATTCTCCTTATTCCGAATATACATATGCAGGAAAATACGCTCCTTATGTACTTCAAAATTTGACATCTCTGCCTTTAGTATATGACGTTTATCGAGGCCCAGTTAATCTTGGTGTGTTTGATGTCCCAAAGATGAAGAACAGAAAGTATGTGCAACCGGGTTCCTCTATTCCAATCTATATCAATGATACTCCTGAGGAACAACTTATTAATGTTAAGACAGCACACTTTTCTGAGAGGCTTTTTGAGCAGAAGGCAAATGGGGTTGCTCATCAGTACATTACCATTCAATTTGATGGATCATCAATATTGTCTGATCCTATCTCAATGGATCTTGTAGGACTTACCTACTTTGAGGCTGACTTTTCAACGGCTTACAATGACAATATGGAAAATAATAGAACAAATACAGTTGGTGGTTTTGTTGTTCCAGTTGTATTCGATGTTTCAGTGCAGCGTTACAGCAAATTAATACGATTGTACTCAACGGTGATACTTTCAAATGCAACTTCAACGCCACTCGAGCTGCGATTTGATATTCCATTTGGTGTTGCCCCTATGATATTAGATCCACTATACCCTGGTCAAGAGTTGCCACTGCCTCTCCATTTGGCTGAGGCTGGTAGGATTAGATGGCGTCCAGTTGGAGATTCTTATCTCTGGAGCGAAGTTTATAACCTTTCAAACCTGCTTTCTCAGGAGACTAAAGTTGGATTTCTTAAGTCCTTTGTCTGCTATCCAGCTCATCCAAATAGTGATCCCTTTCGTTGTTGCATTTCCATTCGAAATATCAGGTTACCCTCATCTGTTAGGTCAAGGAAGACTTCACATCTCAAGAGTAGTCTAAACCAAACAGTTTGTAGTCATGATGAAAGATTGAAAAAGTTAGATGAGTCAAAGAAGCAGTTCGTTCACCAAGTGACTCTCAGTATCCCTTTAGTAGTTAATAACTACCTTCCAAAGGAAGTGACATTGACGATAGAAAGTGGTGGGATTACTCGGACTGCATTTCTTTCAGAGGTGGAAACTTCCTTTCATAATGTTGATCCTTCACATCACCTGAAACTTGAGATCCATATGCAAGGGTTCAAACCAGCTGTTTTGAATTTTCCACGTACTGAAACATTTTGTAAAATGGCTAAGTTTGGTGGAGCCAAGTTTTCACTTTCTGAAATTGTGGCCTTTTATACAGACTCATCAAATGGTCCTACATATGTTACCGTGGAAAAGGTGTTGGATGCATTTTCTGGTGCCAGGGAACTCTTCATTTTTGTTCCCTTTCTGTTGTATAATTGCACTGGTTTCCCTCTTGTCATTCAACATGCTTCCAGTGAAATGAGAGTAAGTTGTACAGTTCCTTCTTGTTATCATATGGCTGAACAAGAGCTTCTTCAGGACAAAAAAGATGGTCTCAGTACGGTTTCTTCTAGCCATCATCTGCGTGCTACGGGTTCATATGGTCTAGGAAATTCTTCCTCAAGAGGTCATGTTGTCTCAGTTAGAGAGAATGTGAATCCACACAAAGAAATATTTCTTAGCAAACCTTTGAATCCATCGAACTCTGAACAAAATCTTCATGAGTTTTCGAGCAAAAGGGATTTAGACCGTAGCAAAAGTGATTTAGATGGTCAAAATTCTCTTTCTAATAGATCACATAACAGATCGAGTTCAAGCAGTCAGTTGACCGTAAAAGATTCGAACTTTAATGGTTTTGAGCGTGGAAGGGCTAGGGCATGCATGTTCTCACCTAACCCCAATTCCTCTGCTGGTGAAGTTATGGTTAGAGCAAGTAGGTGTCTGCCTGAATATGTAATTGAAAAGATGCCAAATTCTCTATGGTCAAGTCCATTTTCCCTTGTTCCACCTAGTGATTCAACCACCGTCCTTGTTCCACATCCATCATCAAGTGCAGCAATCATGTTGTCTGTAACATCTAGTGCAGTTGCTGCACCATTTGCTGGAAGGACAAGTGCCATCACTTTCCAGCCCAGGTACATCATCAGCAATGCATGCAGCAAGGACTTATGTTATAAGCAAAAAGGGACTGATATCGTTTTTCATTTAGGCATAGGAGAACATTCTCATCTTCACTGGATGGATACAGCCAGGGAGTTACTGGTTTCCATCCGTTACGATGAACCTGGATGGCAATGGTCAGGTAGCTTCTTGCCTGATCATCTTGGCGATACTCAAGTGAAATTGCGGAATTATCTTTCTGGTTCATTAAATATGATACGGGTTGAAGTGCAGAATGCTGATGTCTCTCCAGGAGATGAAAAAATTATTGGAAACTTCCATGGAAATTCTGGGACAAATTTGATTCTCATATCAGATGATGAGACTGGATACATGCCCTACAGAATTGATAATTTTTCAAACGAGAGGCTAAGGATTTACCAGCAGAGGTGTGAAACGTTTGAAACAATTGTTCACTCTTACACATCTTGCCCTTATGCCTGGGACGAACCATGCTATCCACGCCGTCTCACCGTGGAGGTACCCGGAAAGCGTGTTTTGGGGTCATACGCTCTTGATGATGTGAAAGAGTACAGTCCGGTGCAAGTACCATCATCTTCTGAGGTTAAACCTGAGAGGACATTGCATTTATCCGTCCATGCTGAGGGAGCAACTAAGGTCCTCCATGTTATTGATTCAAGTTACCATGTTGTGAGTGACATGACGAATCCAACTGTTCCTCACTTGAGAGAGAAGGGGAAACATGAACAGAAACAGGACAAGTTTGTAGGTTTCATGGAAAGAATTTCAATTGTTATTCAACACATTGGTATCTCCATGATCAATATTTATCCACAGGAATTGATTTTTGCTTGTGCAAAGAACATTACAATTGATCTTGTACAGAGTTTGGATCAACAAAAGCTTTCCTTGCAAATCACATCATTGCAAATTGATAACCAGCTGCGTTCTACCCCATATCCTGTTATCCTGTCCTTTGACCATGATTATAAAAGCAATCCAATTGGCCATGTGATTAAGGATGATGTCATGAAACCAATAAGTGAAAGACTGCTTCAAAGGACTTCTCACAGCTCTTTCGAACCTGTTTTCTACCTTGCTGTATCAAAATGGAGGAAGAAAGATGTCTCATTGGTTTCGTTTGAATATATCAGCTTAAGAGTTGCTGACTTCTGTCTTGAGCTGGAGCAAGAATTGATATTAAGCCTGTTTGACTTCATAAAAAATGTTACTTCAAGGTTCCAGAGTAGAGTTTTTCCATTGTCGGATCCATTCCTGCGCTCTCGTATCAATGACACAGGTTTAATGGATTCCTTTGCAACAGAGAAACAACTTCACTTAATGACTGCTCCTGCTTCTACTGAAAACCACAAACCGAGACTCTCTCTACCTTCAATTGTTCCAATTGGAGCTCCATGGCAGCAAATTTACCTATTAGCTAGAAGACAGAAAAAGATCTTTGTCGAAGTGTTTGATTTTGGCCCCATCAACTTGACCCTAAGCTTTTCAAGTGCTCCGTGGATGCTTAGAAATGGGATTCTTACTGCAGGAGAATCTGTTATCCATAGAGGTCTTATGGCTCTTGCTGATGTTGAGGGTGCACGAATTCATCTCAAGCAGCTGACAATTACACATCAAATTGCTAGTTCAGAGTCCCTTCAAGAGATCCTTGTAAGGCATTATACTCGGCAACTTCTTCATGAGATGTATAAGGTGTTTGGTTCTGCTGGTGTTATAGGCAATCCCATGGGATTTGCAAGGAGTATGGGGCTTGGCATTAAAGATTTCTTGTCAGTGCCTGCTAGGAGCATTTTTCTGAGCCCCACTGGACTAATTACTGGCATGGCACAAGGCACCACTAGTCTTTTAAGTAACACTGTCTACGCTATAAGTGATGCTGCCACACAATTCAGCAAAGCTGCGCACAAGGGAATCGTGGCATTTACATTTGACGACCAGGCTGTTTCAGAAGTGGAACAGCAGCAGAGTGGTATTGCTACTCATTCTAAAGGTGTGATAAATGGAATATTTGAGGGACTCACAGGTCTTCTTCAATCACCAATTAAAGGAGCTGAGAAACATGGCCTTCCTGGTGTCCTTTCAGGCATAGCTTTAGGTATTACAGGACTAGTGGCAAAACCAGCTGCTAGTATTCTTGAAGTTACTGGAAAAACTGCACAGAGTATCAGAAATCGGAGTAGGCTCTATCAAATGGGACAACAGCGCTTAAGAGTCCGTCTTCCAAGGCCTTTAAGCAGGGAACTCCCCTTAAGACCTTATTCTTGGGAAGATGCTGTTGGAACTTCAGTGCTTGTTGAGGCGGATGATAGTTTGAGGCTCAAGGATGAGATTTTAGTCATGTGCAAGGAACTTAGACAAGCTGGTAAATTTGTCATCATTACACAGAGGCTTGTATTGATTGTTAGCTGCTCAAATCTGGTGGACTTAGGCAAGCCTGAATTTCGAGGTGTTCCTGCTGACCTTAACTGGGTAATTGAATCTGAAATCTGTTTGGAGAGTGTTATACATGCTGACTGTGATGAAGGAGTAGTGCATATAGTCGGAAGCAGTTCAGATGCCCCTTTGCGGCAAAACCAGCAAACTAAAAGCAGCAGTGGAACACGGGCAGTTCGTTGGAACAATCCTACTGTTCCTCTCGTACAGACAAACCTGGAACTGGCTCGCAAAGACGATGCGGATAATTTGTTGCAGATTTTGTTGTCTGCAATAGAATTAGGAAAGGAGCACGGGTGGGGATGTAGGTATCTTCTGCAACGAAGTAACATCAAATAA

Protein Analysis

3473

Amino Acids

389.57

Weight (kDa)

5.82

Isoelectric Point (pI)

43.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VPS13_N PF12624 3 - 445 4e-71 VPS13-like family N-terminal region
VPS13_M PF25033 1788 - 1853 3.7e-06 VPS13-like family middle region
VPS13_VAB PF25036 2029 - 2337 4.6e-12 Vacuolar-sorting associated protein 13, adaptor binding domain
VPS13_VAB PF25036 2446 - 2707 8.3e-24 Vacuolar-sorting associated protein 13, adaptor binding domain
VPS13_C PF25037 3287 - 3356 2.4e-07 Intermembrane lipid transfer protein VPS13, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 6324, 7680, 8616
AasI GACNNNNNNGTC 2 cut(s) 4103, 9669
Acc16I TGCGCA 3 cut(s) 1008, 5529, 9549
Acc36I ACCTGC 1 cut(s) 6345
Acc65I GGTACC 1 cut(s) 8146
AccB1I GGYRCC 4 cut(s) 4311, 6899, 8146, 9479
AccB7I CCANNNNNTGG 3 cut(s) 566, 684, 7607
AccBSI CCGCTC 1 cut(s) 641
AccI GTMKAC 3 cut(s) 1223, 4065, 9507
AclI AACGTT 2 cut(s) 2305, 8063
AcoI YGGCCR 2 cut(s) 3506, 8632
AcvI CACGTG 1 cut(s) 912
AcyI GRCGYC 1 cut(s) 6286
AdeI CACNNNGTG 2 cut(s) 6568, 7517
AfeI AGCGCT 1 cut(s) 9851
AflII CTTAAG 6 cut(s) 3466, 4492, 6368, 8782, 9853, 9895
AflIII ACRYGT 2 cut(s) 379, 911
AhlI ACTAGT 2 cut(s) 9485, 9754
AjiI CACGTC 1 cut(s) 3495
AjuI GAANNNNNNNTTGG 4 cut(s) 7917, 7949, 9906, 9938
AloI GAACNNNNNNTCC 2 cut(s) 1313, 1345
Alw21I GWGCWC 7 cut(s) 1492, 2434, 4198, 9040, 9142, 9229, 10374
Alw44I GTGCAC 2 cut(s) 1488, 9225
AlwNI CAGNNNCTG 3 cut(s) 3302, 7595, 9425
Ama87I CYCGRG 5 cut(s) 1308, 3547, 3659, 3938, 6170
Aor51HI AGCGCT 1 cut(s) 9851
ApaI GGGCCC 1 cut(s) 3540
ApaLI GTGCAC 2 cut(s) 1488, 9225
ArsI GACNNNNNNTTYG 2 cut(s) 5358, 5390
AseI ATTAAT 2 cut(s) 5859, 6119
Asp700I GAANNNNTTC 9 cut(s) 1017, 1401, 3409, 4271, 5260, 6554, 7120, 7179, 10195
Asp718I GGTACC 1 cut(s) 8146
AspLEI GCGC 5 cut(s) 1009, 5530, 8907, 9550, 9852
AsuC2I CCSGG 8 cut(s) 185, 1309, 1310, 3939, 3940, 4713, 5808, 8151
AsuII TTCGAA 3 cut(s) 6433, 7346, 8706
AsuNHI GCTAGC 1 cut(s) 2947
AvaI CYCGRG 5 cut(s) 1308, 3547, 3659, 3938, 6170
AvaII GGWCC 3 cut(s) 232, 6854, 8284
AxyI CCTNAGG 1 cut(s) 5844
BaeGI GKGCMC 4 cut(s) 1492, 3540, 3819, 9229
BaeI ACNNNNGTAYC 4 cut(s) 7827, 7860, 8419, 8452
BalI TGGCCA 2 cut(s) 3508, 8634
BamHI GGATCC 1 cut(s) 8893
BanI GGYRCC 4 cut(s) 4311, 6899, 8146, 9479
BanII GRGCYC 3 cut(s) 3540, 9040, 9449
BarI GAAGNNNNNNTAC 4 cut(s) 6991, 7023, 7057, 7089
BbrPI CACGTG 1 cut(s) 912
BbsI GAAGAC 7 cut(s) 2724, 3456, 5410, 6476, 9076, 9665, 9857
Bbv12I GWGCWC 7 cut(s) 1492, 2434, 4198, 9040, 9142, 9229, 10374
BbvCI CCTCAGC 2 cut(s) 6264, 8268
BceAI ACGGC 3 cut(s) 2514, 6036, 8115
BcgI CGANNNNNNTGC 2 cut(s) 9293, 9327
BciVI GTATCC 3 cut(s) 6590, 7741, 7988
BclI TGATCA 6 cut(s) 286, 1138, 4045, 5131, 7822, 8445
BcnI CCSGG 8 cut(s) 185, 1309, 1310, 3939, 3940, 4713, 5808, 8151
BcuI ACTAGT 2 cut(s) 9485, 9754
BfoI RGCGCY 1 cut(s) 9853
BfrI CTTAAG 6 cut(s) 3466, 4492, 6368, 8782, 9853, 9895
BfuAI ACCTGC 1 cut(s) 6345
BfuI GTATCC 3 cut(s) 6590, 7741, 7988
BglII AGATCT 3 cut(s) 2188, 3355, 9081
BlpI GCTNAGC 3 cut(s) 1116, 4505, 5018
BmcAI AGTACT 3 cut(s) 821, 1159, 2331
Bme18I GGWCC 3 cut(s) 232, 6854, 8284
BmeT110I CYCGRG 5 cut(s) 1308, 3547, 3659, 3938, 6170
BmgBI CACGTC 1 cut(s) 3495
BmrI ACTGGG 3 cut(s) 2772, 5744, 10123
BmtI GCTAGC 1 cut(s) 2951
BmuI ACTGGG 3 cut(s) 2772, 5744, 10123
BoxI GACNNNNGTC 2 cut(s) 5507, 8799
BpiI GAAGAC 7 cut(s) 2724, 3456, 5410, 6476, 9076, 9665, 9857
BplI GAGNNNNNCTC 6 cut(s) 3541, 3573, 3978, 4010, 8995, 9027
BpmI CTGGAG 8 cut(s) 1422, 1478, 2244, 2552, 3205, 6331, 7899, 8831
Bpu10I CCTNAGC 6 cut(s) 423, 4440, 6264, 8036, 8268, 9125
Bpu1102I GCTNAGC 3 cut(s) 1116, 4505, 5018
Bpu14I TTCGAA 3 cut(s) 6433, 7346, 8706
BpuMI CCSGG 8 cut(s) 185, 1309, 1310, 3939, 3940, 4713, 5808, 8151
BsaAI YACGTR 3 cut(s) 912, 3521, 6764
BsaBI GATNNNNATC 6 cut(s) 1930, 3354, 4564, 4854, 5511, 6303
BsaHI GRCGYC 1 cut(s) 6286
BsaI GGTCTC 1 cut(s) 7064
BsaWI WCCGGW 1 cut(s) 8203
BsaXI ACNNNNNCTCC 8 cut(s) 5281, 5311, 6237, 6267, 9168, 9198, 10361, 10391
Bse21I CCTNAGG 1 cut(s) 5844
Bse3DI GCAATG 6 cut(s) 3599, 3835, 7660, 7805, 8246, 8549
Bse8I GATNNNNATC 6 cut(s) 1930, 3354, 4564, 4854, 5511, 6303
BseJI GATNNNNATC 6 cut(s) 1930, 3354, 4564, 4854, 5511, 6303
BseMI GCAATG 6 cut(s) 3599, 3835, 7660, 7805, 8246, 8549
BseRI GAGGAG 1 cut(s) 2654
BseSI GKGCMC 4 cut(s) 1492, 3540, 3819, 9229
BseYI CCCAGC 2 cut(s) 398, 3005
BsgI GTGCAG 6 cut(s) 6122, 7578, 7581, 7608, 7916, 9786
Bsh1285I CGRYCG 1 cut(s) 645
BshNI GGYRCC 4 cut(s) 4311, 6899, 8146, 9479
BsiEI CGRYCG 1 cut(s) 645
BsiHKAI GWGCWC 7 cut(s) 1492, 2434, 4198, 9040, 9142, 9229, 10374
BsiHKCI CYCGRG 5 cut(s) 1308, 3547, 3659, 3938, 6170
BsiSI CCGG 7 cut(s) 184, 1309, 3939, 4712, 5807, 8151, 8204
BsmBI CGTCTC 2 cut(s) 1691, 8138
BsmI GAATGC 8 cut(s) 1291, 1503, 1791, 2377, 3630, 4031, 5160, 7906
Bso31I GGTCTC 1 cut(s) 7064
BsoBI CYCGRG 5 cut(s) 1308, 3547, 3659, 3938, 6170
Bsp119I TTCGAA 3 cut(s) 6433, 7346, 8706
Bsp120I GGGCCC 1 cut(s) 3536
Bsp1407I TGTACA 3 cut(s) 2349, 6998, 8506
Bsp1720I GCTNAGC 3 cut(s) 1116, 4505, 5018
Bsp19I CCATGG 3 cut(s) 7945, 9041, 9372
BspHI TCATGA 7 cut(s) 3178, 3382, 4155, 6514, 7225, 8655, 9325
BspMAI CTGCAG 8 cut(s) 355, 1245, 1677, 2439, 3298, 3478, 4415, 9175
BspMI ACCTGC 1 cut(s) 6345
BspOI GCTAGC 1 cut(s) 2951
BspT104I TTCGAA 3 cut(s) 6433, 7346, 8706
BspT107I GGYRCC 4 cut(s) 4311, 6899, 8146, 9479
BspTI CTTAAG 6 cut(s) 3466, 4492, 6368, 8782, 9853, 9895
BspTNI GGTCTC 1 cut(s) 7064
BsrBI CCGCTC 1 cut(s) 641
BsrDI GCAATG 6 cut(s) 3599, 3835, 7660, 7805, 8246, 8549
BsrGI TGTACA 3 cut(s) 2349, 6998, 8506
BssNI GRCGYC 1 cut(s) 6286
BssT1I CCWWGG 8 cut(s) 212, 2012, 3142, 5441, 7945, 9041, 9372, 9869
Bst6I CTCTTC 4 cut(s) 565, 773, 4411, 6917
BstACI GRCGYC 1 cut(s) 6286
BstAFI CTTAAG 6 cut(s) 3466, 4492, 6368, 8782, 9853, 9895
BstAPI GCANNNNNTGC 4 cut(s) 2960, 7595, 7604, 7659
BstAUI TGTACA 3 cut(s) 2349, 6998, 8506
BstBAI YACGTR 3 cut(s) 912, 3521, 6764
BstBI TTCGAA 3 cut(s) 6433, 7346, 8706
BstDSI CCRYGG 7 cut(s) 1333, 6870, 7945, 8139, 9041, 9143, 9372
BstEII GGTNACC 2 cut(s) 5381, 6444
BstENI CCTNNNNNAGG 2 cut(s) 1109, 6608
BstH2I RGCGCY 1 cut(s) 9853
BstHHI GCGC 5 cut(s) 1009, 5530, 8907, 9550, 9852
BstMCI CGRYCG 1 cut(s) 645
BstPAI GACNNNNGTC 2 cut(s) 5507, 8799
BstPI GGTNACC 2 cut(s) 5381, 6444
BstSLI GKGCMC 4 cut(s) 1492, 3540, 3819, 9229
BstV2I GAAGAC 7 cut(s) 2724, 3456, 5410, 6476, 9076, 9665, 9857
Bsu36I CCTNAGG 1 cut(s) 5844
BsuI GTATCC 3 cut(s) 6590, 7741, 7988
BtgI CCRYGG 7 cut(s) 1333, 6870, 7945, 8139, 9041, 9143, 9372
BtgZI GCGATG 1 cut(s) 3869
BtrI CACGTC 1 cut(s) 3495
BtsI GCAGTG 5 cut(s) 998, 2785, 2899, 6245, 10246
BveI ACCTGC 1 cut(s) 6345
CaiI CAGNNNCTG 3 cut(s) 3302, 7595, 9425
CciI TCATGA 7 cut(s) 3178, 3382, 4155, 6514, 7225, 8655, 9325
CfoI GCGC 5 cut(s) 1009, 5530, 8907, 9550, 9852
Cfr9I CCCGGG 2 cut(s) 1308, 3938
CseI GACGC 1 cut(s) 6275
CsiI ACCWGGT 1 cut(s) 4537
DraI TTTAAA 6 cut(s) 174, 861, 1857, 3567, 5242, 5649
DraIII CACNNNGTG 2 cut(s) 6568, 7517
DrdI GACNNNNNNGTC 2 cut(s) 4103, 9669
DseDI GACNNNNNNGTC 2 cut(s) 4103, 9669
EaeI YGGCCR 2 cut(s) 3506, 8632
Eam1104I CTCTTC 4 cut(s) 565, 773, 4411, 6917
EarI CTCTTC 4 cut(s) 565, 773, 4411, 6917
EciI GGCGGA 2 cut(s) 5244, 9962
Ecl136II GAGCTC 1 cut(s) 9038
Eco130I CCWWGG 8 cut(s) 212, 2012, 3142, 5441, 7945, 9041, 9372, 9869
Eco147I AGGCCT 1 cut(s) 9874
Eco24I GRGCYC 3 cut(s) 3540, 9040, 9449
Eco31I GGTCTC 1 cut(s) 7064
Eco32I GATATC 3 cut(s) 2614, 2896, 7699
Eco47I GGWCC 3 cut(s) 232, 6854, 8284
Eco47III AGCGCT 1 cut(s) 9851
Eco53kI GAGCTC 1 cut(s) 9038
Eco72I CACGTG 1 cut(s) 912
Eco81I CCTNAGG 1 cut(s) 5844
Eco88I CYCGRG 5 cut(s) 1308, 3547, 3659, 3938, 6170
Eco91I GGTNACC 2 cut(s) 5381, 6444
EcoICRI GAGCTC 1 cut(s) 9038
EcoNI CCTNNNNNAGG 2 cut(s) 1109, 6608
EcoO109I RGGNCCY 5 cut(s) 232, 3536, 3537, 5207, 8284
EcoO65I GGTNACC 2 cut(s) 5381, 6444
EcoRI GAATTC 1 cut(s) 9231
EcoRV GATATC 3 cut(s) 2614, 2896, 7699
EcoT14I CCWWGG 8 cut(s) 212, 2012, 3142, 5441, 7945, 9041, 9372, 9869
EcoT22I ATGCAT 4 cut(s) 3398, 6892, 7388, 7660
EcoT38I GRGCYC 3 cut(s) 3540, 9040, 9449
ErhI CCWWGG 8 cut(s) 212, 2012, 3142, 5441, 7945, 9041, 9372, 9869
Esp3I CGTCTC 2 cut(s) 1691, 8138
FauNDI CATATG 6 cut(s) 2956, 5674, 6726, 6862, 7020, 7105
FbaI TGATCA 6 cut(s) 286, 1138, 4045, 5131, 7822, 8445
FblI GTMKAC 3 cut(s) 1223, 4065, 9507
FriOI GRGCYC 3 cut(s) 3540, 9040, 9449
FspI TGCGCA 3 cut(s) 1008, 5529, 9549
GlaI GCGC 5 cut(s) 1008, 5529, 8906, 9549, 9851
GsaI CCCAGC 2 cut(s) 402, 3009
GsuI CTGGAG 8 cut(s) 1422, 1478, 2244, 2552, 3205, 6331, 7899, 8831
HaeII RGCGCY 1 cut(s) 9853
HapII CCGG 7 cut(s) 184, 1309, 3939, 4712, 5807, 8151, 8204
HgaI GACGC 1 cut(s) 6275
HhaI GCGC 5 cut(s) 1009, 5530, 8907, 9550, 9852
Hin1I GRCGYC 1 cut(s) 6286
Hin6I GCGC 5 cut(s) 1007, 5528, 8905, 9548, 9850
HinP1I GCGC 5 cut(s) 1007, 5528, 8905, 9548, 9850
HincII GTYRAC 5 cut(s) 784, 1102, 4178, 5502, 7332
HindII GTYRAC 5 cut(s) 784, 1102, 4178, 5502, 7332
HindIII AAGCTT 3 cut(s) 221, 8528, 9127
HpaI GTTAAC 1 cut(s) 1102
HpaII CCGG 7 cut(s) 184, 1309, 3939, 4712, 5807, 8151, 8204
Hsp92I GRCGYC 1 cut(s) 6286
HspAI GCGC 5 cut(s) 1007, 5528, 8905, 9548, 9850
KflI GGGWCCC 1 cut(s) 232
KpnI GGTACC 1 cut(s) 8150
Ksp22I TGATCA 6 cut(s) 286, 1138, 4045, 5131, 7822, 8445
KspAI GTTAAC 1 cut(s) 1102
MabI ACCWGGT 1 cut(s) 4537
MbiI CCGCTC 1 cut(s) 641
MfeI CAATTG 8 cut(s) 986, 1146, 8073, 8415, 8496, 8628, 9021, 9030
MlsI TGGCCA 2 cut(s) 3508, 8634
MluNI TGGCCA 2 cut(s) 3508, 8634
Mox20I TGGCCA 2 cut(s) 3508, 8634
Mph1103I ATGCAT 4 cut(s) 3398, 6892, 7388, 7660
MroXI GAANNNNTTC 9 cut(s) 1017, 1401, 3409, 4271, 5260, 6554, 7120, 7179, 10195
MscI TGGCCA 2 cut(s) 3508, 8634
MslI CAYNNNNRTG 5 cut(s) 443, 3381, 3502, 5139, 7089
Msp20I TGGCCA 2 cut(s) 3508, 8634
MspA1I CMGCKG 7 cut(s) 82, 833, 5305, 6746, 8569, 9247, 9770
MspCI CTTAAG 6 cut(s) 3466, 4492, 6368, 8782, 9853, 9895
MspI CCGG 7 cut(s) 184, 1309, 3939, 4712, 5807, 8151, 8204
MunI CAATTG 8 cut(s) 986, 1146, 8073, 8415, 8496, 8628, 9021, 9030
Mva1269I GAATGC 8 cut(s) 1291, 1503, 1791, 2377, 3630, 4031, 5160, 7906
NciI CCSGG 8 cut(s) 185, 1309, 1310, 3939, 3940, 4713, 5808, 8151
NcoI CCATGG 3 cut(s) 7945, 9041, 9372
NdeI CATATG 6 cut(s) 2956, 5674, 6726, 6862, 7020, 7105
NheI GCTAGC 1 cut(s) 2947
NmeAIII GCCGAG 2 cut(s) 473, 9292
NmuCI GTSAC 9 cut(s) 488, 750, 1893, 3730, 5347, 5381, 6568, 6616, 8321
NsbI TGCGCA 3 cut(s) 1008, 5529, 9549
NsiI ATGCAT 4 cut(s) 3398, 6892, 7388, 7660
NspV TTCGAA 3 cut(s) 6433, 7346, 8706
PaeI GCATGC 4 cut(s) 1342, 3089, 7386, 7662
PaeR7I CTCGAG 1 cut(s) 6170
PagI TCATGA 7 cut(s) 3178, 3382, 4155, 6514, 7225, 8655, 9325
PceI AGGCCT 1 cut(s) 9874
PcsI WCGNNNNNNNCGW 2 cut(s) 2202, 10255
PctI GAATGC 8 cut(s) 1291, 1503, 1791, 2377, 3630, 4031, 5160, 7906
PdmI GAANNNNTTC 9 cut(s) 1017, 1401, 3409, 4271, 5260, 6554, 7120, 7179, 10195
PflFI GACNNNGTC 1 cut(s) 4892
PflMI CCANNNNNTGG 3 cut(s) 566, 684, 7607
PfoI TCCNGGA 2 cut(s) 4711, 7915
PmaCI CACGTG 1 cut(s) 912
PmlI CACGTG 1 cut(s) 912
Ppu21I YACGTR 3 cut(s) 912, 3521, 6764
PpuMI RGGWCCY 2 cut(s) 232, 8284
PshAI GACNNNNGTC 2 cut(s) 5507, 8799
PshBI ATTAAT 2 cut(s) 5859, 6119
PsiI TTATAA 3 cut(s) 6324, 7680, 8616
Psp124BI GAGCTC 1 cut(s) 9040
Psp1406I AACGTT 2 cut(s) 2305, 8063
Psp5II RGGWCCY 2 cut(s) 232, 8284
PspCI CACGTG 1 cut(s) 912
PspEI GGTNACC 2 cut(s) 5381, 6444
PspFI CCCAGC 2 cut(s) 398, 3005
PspOMI GGGCCC 1 cut(s) 3536
PspPPI RGGWCCY 2 cut(s) 232, 8284
PspXI VCTCGAGB 1 cut(s) 6170
PstI CTGCAG 8 cut(s) 355, 1245, 1677, 2439, 3298, 3478, 4415, 9175
PstNI CAGNNNCTG 3 cut(s) 3302, 7595, 9425
PsyI GACNNNGTC 1 cut(s) 4892
PvuII CAGCTG 5 cut(s) 82, 6746, 8569, 9247, 9770
RseI CAYNNNNRTG 5 cut(s) 443, 3381, 3502, 5139, 7089
SacI GAGCTC 1 cut(s) 9040
ScaI AGTACT 3 cut(s) 821, 1159, 2331
SexAI ACCWGGT 1 cut(s) 4537
Sfr274I CTCGAG 1 cut(s) 6170
SfuI TTCGAA 3 cut(s) 6433, 7346, 8706
SinI GGWCC 3 cut(s) 232, 6854, 8284
SlaI CTCGAG 1 cut(s) 6170
SmaI CCCGGG 2 cut(s) 1310, 3940
SmiMI CAYNNNNRTG 5 cut(s) 443, 3381, 3502, 5139, 7089
SpeI ACTAGT 2 cut(s) 9485, 9754
SphI GCATGC 4 cut(s) 1342, 3089, 7386, 7662
SseBI AGGCCT 1 cut(s) 9874
SspI AATATT 9 cut(s) 726, 1996, 3194, 3257, 4786, 5958, 7179, 8452, 9654
SstI GAGCTC 1 cut(s) 9040
StuI AGGCCT 1 cut(s) 9874
StyI CCWWGG 8 cut(s) 212, 2012, 3142, 5441, 7945, 9041, 9372, 9869
TauI GCSGC 2 cut(s) 5305, 10216
TseFI GTSAC 9 cut(s) 488, 750, 1893, 3730, 5347, 5381, 6568, 6616, 8321
Tsp45I GTSAC 9 cut(s) 488, 750, 1893, 3730, 5347, 5381, 6568, 6616, 8321
TspGWI ACGGA 7 cut(s) 948, 1612, 1715, 7766, 8248, 9132, 9851
TspMI CCCGGG 2 cut(s) 1308, 3938
Tth111I GACNNNGTC 1 cut(s) 4892
Van91I CCANNNNNTGG 3 cut(s) 566, 684, 7607
Vha464I CTTAAG 6 cut(s) 3466, 4492, 6368, 8782, 9853, 9895
VneI GTGCAC 2 cut(s) 1488, 9225
VpaK11BI GGWCC 3 cut(s) 232, 6854, 8284
VspI ATTAAT 2 cut(s) 5859, 6119
XagI CCTNNNNNAGG 2 cut(s) 1109, 6608
XcmI CCANNNNNNNNNTGG 5 cut(s) 2527, 5174, 7482, 7762, 7952
XhoI CTCGAG 1 cut(s) 6170
XmaI CCCGGG 2 cut(s) 1308, 3938
XmiI GTMKAC 3 cut(s) 1223, 4065, 9507
XmnI GAANNNNTTC 9 cut(s) 1017, 1401, 3409, 4271, 5260, 6554, 7120, 7179, 10195
ZrmI AGTACT 3 cut(s) 821, 1159, 2331
Zsp2I ATGCAT 4 cut(s) 3398, 6892, 7388, 7660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.