Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001657

Physical Location & Seq

Genomic Coordinates Reverse (-)

52692261 .. 52695130

Gene Structure 2870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32893

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGATCTTCCTGAAAGACAAGAGTCATTGCATTCTCCATTTGCTGAGTACGCATATCAGGAAAATATGCTCCTTATGTACTTCAAAACTGACATCGCTGCCTCTAAAATATCGTGTTTATCAAGGCCCAATTAGTCCTGATGAGTTTGATGCCTCAGAAACGAATAGAAAAGTTGTACAACCAGGTTCTTCCATTCCAATATATATCAATGATACTCTTGAGGAGCAACTTATTCATGCTAAGCCAGCGAACTTCTCTAATAGACTTTTTGACCAGAAGGCAAATGGGGTTTGTAATCAGTATATTACTATTCAACTTGATGGAACATCAGTGCCTTCTGATCCGATTTCAATGGATCTTGTAGGACTTGCCTACTCTGAGGGTTATCTTTCTATGTCATACAACGACCATATGGAAAACCATAGAACAAAGGCCAATGCTGGTTTTGTTGTTCCTGTTGTGTTTGATGTTTCAGTGCTGCAGTACAGCAAGTTAATCCGATTATACTCAAAGGTTATACTTTCAAATGCGACTTCAGTGCCATTGGAGCTGCGATTTGATATTCCATTTGGTGTGTCCCCAAAGATCTGGGACCCCATATATCCAGGTCAAGAGTTACCGATGCCTCTAACTTGGCAGAAGCCGGTAGGATTAGATGGTGTCCAATTGGAGATTCTCATCTCTGGAGTGAAGTTTATAACCTCGGAAGCTTATAACCTCTCAAACCTGCTTTCTCAAGAGAGTAAAATTAAATTTCTCAAGTCTTTTGGTTGCTATTCAGCCCATCCCAATAGTGATCCATTTCACTGTTGTATTTCAGTTAGAAACATCAGTTTACCTTCATCTGTTAGGTCAAGGGAGATCTTTTCTTCACATCTTAAGAGTTCTTTAAAGCAAGCAGTTGCAAGTAGTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0006810 GO:0006914 GO:0006996 GO:0007033 GO:0007034 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016043 GO:0016192 GO:0016236 GO:0022607 GO:0030587 GO:0031154 GO:0032502 GO:0044085 GO:0044237 GO:0044248 GO:0045324 GO:0046907 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051703 GO:0051704 GO:0061919 GO:0070925 GO:0071840 GO:0090702 GO:0099120 GO:1905037

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chorein_N SHR-BD VPS13 VPS13_C VPS13_mid_rpt

Protein Analysis

305

Amino Acids

33.97

Weight (kDa)

8.38

Isoelectric Point (pI)

37.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24740 AT5G24740 AT5G24740 AT5G24740 AT5G24740 AT5G24740
fragaria_vesca	FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300
malus_domestica	MD09G1170300.v1.1 MD17G1156800.v1.1
prunus_persica	Prupe.3G028500_v2.0.a1 Prupe.3G028500_v2.0.a1 Prupe.3G028500_v2.0.a1
pyrus_communis	pycom09g08790 pycom17g15020
rosa_chinensis	RchiOBHm_Chr2g0148301 RchiOBHm_Chr2g0148311 RchiOBHm_Chr5g0051461
rosa_laevigata	RLG00000020335
rosa_multiflora	Rmu_sc0004032.1_g000013 Rmu_sc0022189.1_g000006
rosa_roxburghii	Rroxscaffold_1G00027070 Rroxscaffold_2G00098910 Rroxscaffold_2G00098920
rosa_rugosa	Rorug02G0405600 Rorug05G0279200
rosa_samantha	Rh2AG464200 Rh2BG477200 Rh2CG450900 Rh2DG486000 Rh5AG350300 Rh5AG350400 Rh5BG362600 Rh5CG387200 Rh5DG377000
rosa_wichuraiana	Rw2G037840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	698, 714
Acc36I	ACCTGC	1 cut(s)	735
AclWI	GGATC	3 cut(s)	335, 363, 791
AcsI	RAATTY	1 cut(s)	752
AcuI	CTGAAG	1 cut(s)	519
AfaI	GTAC	4 cut(s)	49, 79, 177, 485
AflII	CTTAAG	1 cut(s)	878
AgsI	TTSAA	4 cut(s)	84, 314, 351, 525
AjnI	CCWGG	2 cut(s)	181, 604
AjuI	GAANNNNNNNTTGG	2 cut(s)	657, 689
AluBI	AGCT	2 cut(s)	550, 710
AluI	AGCT	2 cut(s)	550, 710
AlwI	GGATC	3 cut(s)	335, 363, 791
AoxI	GGCC	2 cut(s)	124, 432
ApeKI	GCWGC	3 cut(s)	97, 478, 550
ApoI	RAATTY	1 cut(s)	752
AspS9I	GGNCC	2 cut(s)	125, 592
AvaII	GGWCC	1 cut(s)	592
BbvI	GCAGC	3 cut(s)	84, 465, 537
BccI	CCATC	3 cut(s)	314, 650, 792
BcgI	CGANNNNNNTGC	2 cut(s)	520, 554
BciT130I	CCWGG	2 cut(s)	183, 606
BfmI	CTRYAG	1 cut(s)	479
BfrI	CTTAAG	1 cut(s)	878
BfuAI	ACCTGC	1 cut(s)	735
BglII	AGATCT	2 cut(s)	585, 861
BisI	GCNGC	3 cut(s)	98, 479, 551
BlpI	GCTNAGC	1 cut(s)	240
BlsI	GCNGC	3 cut(s)	99, 480, 552
Bme1390I	CCNGG	2 cut(s)	183, 606
Bme18I	GGWCC	1 cut(s)	592
BmgT120I	GGNCC	2 cut(s)	125, 592
BmiI	GGNNCC	2 cut(s)	593, 594
BmrFI	CCNGG	2 cut(s)	183, 606
BmsI	GCATC	2 cut(s)	139, 612
BoxI	GACNNNNGTC	1 cut(s)	21
BpmI	CTGGAG	1 cut(s)	705
Bpu1102I	GCTNAGC	1 cut(s)	240
BpuEI	CTTGAG	3 cut(s)	239, 720, 743
BsaBI	GATNNNNATC	1 cut(s)	677
BsaJI	CCNNGG	1 cut(s)	702
Bse118I	RCCGGY	1 cut(s)	643
Bse3DI	GCAATG	1 cut(s)	25
Bse8I	GATNNNNATC	1 cut(s)	677
BseBI	CCWGG	2 cut(s)	183, 606
BseDI	CCNNGG	1 cut(s)	702
BseGI	GGATG	1 cut(s)	784
BseJI	GATNNNNATC	1 cut(s)	677
BseMI	GCAATG	1 cut(s)	25
BseMII	CTCAG	3 cut(s)	35, 168, 369
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	3 cut(s)	84, 465, 537
BshFI	GGCC	2 cut(s)	126, 434
BsiSI	CCGG	1 cut(s)	644
BslFI	GGGAC	2 cut(s)	562, 605
BsmFI	GGGAC	2 cut(s)	562, 605
BsmI	GAATGC	1 cut(s)	30
BsnI	GGCC	2 cut(s)	126, 434
Bsp1407I	TGTACA	1 cut(s)	175
Bsp143I	GATC	6 cut(s)	3, 340, 355, 585, 796, 861
Bsp1720I	GCTNAGC	1 cut(s)	240
BspANI	GGCC	2 cut(s)	126, 434
BspCNI	CTCAG	3 cut(s)	36, 167, 370
BspLI	GGNNCC	2 cut(s)	593, 594
BspMAI	CTGCAG	1 cut(s)	483
BspMI	ACCTGC	1 cut(s)	735
BspPI	GGATC	3 cut(s)	335, 363, 791
BspTI	CTTAAG	1 cut(s)	878
BsrDI	GCAATG	1 cut(s)	25
BsrFI	RCCGGY	1 cut(s)	643
BsrGI	TGTACA	1 cut(s)	175
BssAI	RCCGGY	1 cut(s)	643
BssECI	CCNNGG	1 cut(s)	702
BssMI	GATC	6 cut(s)	3, 340, 355, 585, 796, 861
Bst2UI	CCWGG	2 cut(s)	183, 606
Bst4CI	ACNGT	1 cut(s)	809
BstAFI	CTTAAG	1 cut(s)	878
BstAUI	TGTACA	1 cut(s)	175
BstC8I	GCNNGC	2 cut(s)	246, 897
BstDEI	CTNAG	4 cut(s)	44, 154, 240, 378
BstF5I	GGATG	1 cut(s)	784
BstKTI	GATC	6 cut(s)	6, 343, 358, 588, 799, 864
BstMBI	GATC	6 cut(s)	3, 340, 355, 585, 796, 861
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 245, 547
BstNI	CCWGG	2 cut(s)	183, 606
BstPAI	GACNNNNGTC	1 cut(s)	21
BstSCI	CCNGG	2 cut(s)	181, 604
BstSFI	CTRYAG	1 cut(s)	479
BstV1I	GCAGC	3 cut(s)	84, 465, 537
BstX2I	RGATCY	3 cut(s)	355, 585, 861
BstXI	CCANNNNNNTGG	1 cut(s)	588
BstYI	RGATCY	3 cut(s)	355, 585, 861
BsuRI	GGCC	2 cut(s)	126, 434
BtgZI	GCGATG	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	784
BtsIMutI	CAGTG	4 cut(s)	336, 480, 543, 805
BveI	ACCTGC	1 cut(s)	735
Cac8I	GCNNGC	2 cut(s)	246, 897
Cfr10I	RCCGGY	1 cut(s)	643
Cfr13I	GGNCC	2 cut(s)	125, 592
CsiI	ACCWGGT	1 cut(s)	181
Csp6I	GTAC	4 cut(s)	48, 78, 176, 484
CviAII	CATG	1 cut(s)	236
CviJI	RGCY	7 cut(s)	126, 244, 434, 550, 643, 710, 782
CviKI_1	RGCY	7 cut(s)	126, 244, 434, 550, 643, 710, 782
CviQI	GTAC	4 cut(s)	48, 78, 176, 484
DdeI	CTNAG	4 cut(s)	44, 154, 240, 378
DpnI	GATC	6 cut(s)	5, 342, 357, 587, 798, 863
DpnII	GATC	6 cut(s)	3, 340, 355, 585, 796, 861
DraI	TTTAAA	1 cut(s)	891
Eco47I	GGWCC	1 cut(s)	592
Eco57I	CTGAAG	1 cut(s)	519
EcoO109I	RGGNCCY	1 cut(s)	592
EcoRII	CCWGG	2 cut(s)	181, 604
FaeI	CATG	1 cut(s)	239
FaqI	GGGAC	2 cut(s)	562, 605
FatI	CATG	1 cut(s)	235
FauNDI	CATATG	1 cut(s)	411
Fnu4HI	GCNGC	3 cut(s)	98, 479, 551
FokI	GGATG	1 cut(s)	771
Fsp4HI	GCNGC	3 cut(s)	98, 479, 551
GluI	GCNGC	3 cut(s)	98, 479, 551
GsuI	CTGGAG	1 cut(s)	705
HaeIII	GGCC	2 cut(s)	126, 434
HapII	CCGG	1 cut(s)	644
Hin1II	CATG	1 cut(s)	239
HindIII	AAGCTT	1 cut(s)	708
HinfI	GANTC	2 cut(s)	22, 673
HpaII	CCGG	1 cut(s)	644
Hpy166II	GTNNAC	1 cut(s)	836
Hpy188I	TCNGA	6 cut(s)	157, 340, 345, 379, 500, 706
Hpy188III	TCNNGA	7 cut(s)	10, 58, 137, 218, 611, 684, 737
Hpy8I	GTNNAC	1 cut(s)	836
HpyAV	CCTTC	3 cut(s)	271, 345, 849
HpyCH4III	ACNGT	1 cut(s)	809
HpyCH4V	TGCA	3 cut(s)	30, 481, 905
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 245, 547
HpyF3I	CTNAG	4 cut(s)	44, 154, 240, 378
Hsp92II	CATG	1 cut(s)	239
KflI	GGGWCCC	1 cut(s)	592
Kzo9I	GATC	6 cut(s)	3, 340, 355, 585, 796, 861
LmnI	GCTCC	3 cut(s)	74, 223, 547
Lsp1109I	GCAGC	3 cut(s)	84, 465, 537
LweI	GCATC	2 cut(s)	139, 612
MabI	ACCWGGT	1 cut(s)	181
MaeIII	GTNAC	1 cut(s)	615
MalI	GATC	6 cut(s)	5, 342, 357, 587, 798, 863
MboI	GATC	6 cut(s)	3, 340, 355, 585, 796, 861
MboII	GAAGA	2 cut(s)	180, 861
MfeI	CAATTG	1 cut(s)	665
MflI	RGATCY	3 cut(s)	355, 585, 861
MluCI	AATT	4 cut(s)	129, 665, 747, 752
MlyI	GAGTC	1 cut(s)	31
MnlI	CCTC	7 cut(s)	111, 163, 214, 373, 636, 712, 728
MseI	TTAA	5 cut(s)	494, 750, 879, 890, 916
MspCI	CTTAAG	1 cut(s)	878
MspI	CCGG	1 cut(s)	644
MspR9I	CCNGG	2 cut(s)	183, 606
MunI	CAATTG	1 cut(s)	665
Mva1269I	GAATGC	1 cut(s)	30
MvaI	CCWGG	2 cut(s)	183, 606
MwoI	GCNNNNNNNGC	3 cut(s)	49, 245, 547
NdeI	CATATG	1 cut(s)	411
NdeII	GATC	6 cut(s)	3, 340, 355, 585, 796, 861
NlaIII	CATG	1 cut(s)	239
NlaIV	GGNNCC	2 cut(s)	593, 594
PctI	GAATGC	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	673
PkrI	GCNGC	3 cut(s)	99, 480, 552
PleI	GAGTC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	30
PpuMI	RGGWCCY	1 cut(s)	592
PshAI	GACNNNNGTC	1 cut(s)	21
PsiI	TTATAA	2 cut(s)	698, 714
Psp5II	RGGWCCY	1 cut(s)	592
Psp6I	CCWGG	2 cut(s)	181, 604
PspGI	CCWGG	2 cut(s)	181, 604
PspN4I	GGNNCC	2 cut(s)	593, 594
PspPI	GGNCC	2 cut(s)	125, 592
PspPPI	RGGWCCY	1 cut(s)	592
PstI	CTGCAG	1 cut(s)	483
PsuI	RGATCY	3 cut(s)	355, 585, 861
RsaI	GTAC	4 cut(s)	49, 79, 177, 485
RsaNI	GTAC	4 cut(s)	48, 78, 176, 484
SaqAI	TTAA	5 cut(s)	494, 750, 879, 890, 916
SatI	GCNGC	3 cut(s)	98, 479, 551
Sau3AI	GATC	6 cut(s)	3, 340, 355, 585, 796, 861
Sau96I	GGNCC	2 cut(s)	125, 592
SchI	GAGTC	1 cut(s)	31
ScrFI	CCNGG	2 cut(s)	183, 606
SexAI	ACCWGGT	1 cut(s)	181
SfaNI	GCATC	2 cut(s)	139, 612
SfcI	CTRYAG	1 cut(s)	479
SinI	GGWCC	1 cut(s)	592
SmlI	CTYRAG	4 cut(s)	218, 735, 758, 878
SmoI	CTYRAG	4 cut(s)	218, 735, 758, 878
Sse9I	AATT	4 cut(s)	129, 665, 747, 752
StyD4I	CCNGG	2 cut(s)	181, 604
TaaI	ACNGT	1 cut(s)	809
TasI	AATT	4 cut(s)	129, 665, 747, 752
TatI	WGTACW	3 cut(s)	77, 175, 483
TfiI	GAWTC	1 cut(s)	673
Tru1I	TTAA	5 cut(s)	494, 750, 879, 890, 916
Tru9I	TTAA	5 cut(s)	494, 750, 879, 890, 916
TscAI	CASTG	4 cut(s)	336, 480, 543, 812
TseI	GCWGC	3 cut(s)	97, 478, 550
TspDTI	ATGAA	2 cut(s)	224, 831
TspRI	CASTG	4 cut(s)	336, 480, 543, 812
Vha464I	CTTAAG	1 cut(s)	878
VpaK11BI	GGWCC	1 cut(s)	592
XapI	RAATTY	1 cut(s)	752
XcmI	CCANNNNNNNNNTGG	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.