Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022189.1

Orthogroup ID

OG0001657

Physical Location & Seq

Genomic Coordinates Reverse (-)

13778 .. 15970

Gene Structure 2193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022189.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

atggatcttgtaggacttacctactctgagggttatctttctatgtcatacaacgaccatatggaaaaccatagaacaaaggcccatgctgcgcacttctctgagagactttttgaccggaaggcaagtggggtttgtaatcagtatattactattcaacttgatggaacaccagtgccttctgatccgatttcaatggatcttgtaggacttgcctactctgagggttatctttctatgtcatacaacgaccatatggaaaaccatagaacaaaggcccatgctggttttgttgttcctgttgtgtttgatgtttcagtgcagcagtactgcaagttatactttcaaatgctacttcatgcgacttcaatctcttacacttgtatccaggtcaagagttaccgccgcctctacacttggctgaagccggttttaatttgttgccaagagatggctgatgagcaccagaatcccatttacagaagttttgtggtgagctatattttggttccaccctttcagcctttctcatcatgtccacagccacagccacagccacctatcaatcagaggcgttttgcatatggtaattattctaatgcaactgcctcacctttgcttctccaagccccacaagagaaaagggtttgccggcttctgctgctgctccaatcaagtgtggagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0006810 GO:0006914 GO:0006996 GO:0007033 GO:0007034 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016043 GO:0016192 GO:0016236 GO:0022607 GO:0030587 GO:0031154 GO:0032502 GO:0044085 GO:0044237 GO:0044248 GO:0045324 GO:0046907 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051703 GO:0051704 GO:0061919 GO:0070925 GO:0071840 GO:0090702 GO:0099120 GO:1905037

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chorein_N SHR-BD VPS13 VPS13_C VPS13_mid_rpt

Protein Analysis

228

Amino Acids

26.1

Weight (kDa)

7.1

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24740 AT5G24740 AT5G24740 AT5G24740 AT5G24740 AT5G24740
fragaria_vesca	FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300
malus_domestica	MD09G1170300.v1.1 MD17G1156800.v1.1
prunus_persica	Prupe.3G028500_v2.0.a1 Prupe.3G028500_v2.0.a1 Prupe.3G028500_v2.0.a1
pyrus_communis	pycom09g08790 pycom17g15020
rosa_chinensis	RchiOBHm_Chr2g0148301 RchiOBHm_Chr2g0148311 RchiOBHm_Chr5g0051461
rosa_laevigata	RLG00000020335
rosa_multiflora	Rmu_sc0004032.1_g000013 Rmu_sc0022189.1_g000006
rosa_roxburghii	Rroxscaffold_1G00027070 Rroxscaffold_2G00098910 Rroxscaffold_2G00098920
rosa_rugosa	Rorug02G0405600 Rorug05G0279200
rosa_samantha	Rh2AG464200 Rh2BG477200 Rh2CG450900 Rh2DG486000 Rh5AG350300 Rh5AG350400 Rh5BG362600 Rh5CG387200 Rh5DG377000
rosa_wichuraiana	Rw2G037840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	93
AccB7I	CCANNNNNTGG	1 cut(s)	451
AciI	CCGC	2 cut(s)	403, 406
AclWI	GGATC	3 cut(s)	12, 179, 207
AcuI	CTGAAG	1 cut(s)	443
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	1 cut(s)	451
AgsI	TTSAA	4 cut(s)	158, 195, 347, 369
AjnI	CCWGG	1 cut(s)	387
AluBI	AGCT	1 cut(s)	498
AluI	AGCT	1 cut(s)	498
Alw21I	GWGCWC	1 cut(s)	465
Alw26I	GTCTC	1 cut(s)	100
AlwI	GGATC	3 cut(s)	12, 179, 207
AoxI	GGCC	2 cut(s)	81, 276
ApeKI	GCWGC	4 cut(s)	89, 322, 661, 664
AspLEI	GCGC	1 cut(s)	94
AspS9I	GGNCC	2 cut(s)	82, 277
AsuHPI	GGTGA	2 cut(s)	505, 603
BaeI	ACNNNNGTAYC	2 cut(s)	367, 400
Bbv12I	GWGCWC	1 cut(s)	465
BbvI	GCAGC	4 cut(s)	76, 334, 648, 651
BccI	CCATC	2 cut(s)	158, 445
BciT130I	CCWGG	1 cut(s)	389
BciVI	GTATCC	1 cut(s)	395
BcoDI	GTCTC	1 cut(s)	100
BfuI	GTATCC	1 cut(s)	395
BisI	GCNGC	5 cut(s)	90, 323, 406, 662, 665
BlsI	GCNGC	5 cut(s)	91, 324, 407, 663, 666
BmcAI	AGTACT	1 cut(s)	329
Bme1390I	CCNGG	1 cut(s)	389
BmgT120I	GGNCC	2 cut(s)	82, 277
BmiI	GGNNCC	1 cut(s)	510
BmrFI	CCNGG	1 cut(s)	389
BsaWI	WCCGGW	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	1 cut(s)	451
Bse118I	RCCGGY	2 cut(s)	427, 651
Bse1I	ACTGG	1 cut(s)	173
BseBI	CCWGG	1 cut(s)	389
BseLI	CCNNNNNNNGG	1 cut(s)	451
BseMII	CTCAG	3 cut(s)	18, 93, 213
BseNI	ACTGG	1 cut(s)	173
BseXI	GCAGC	4 cut(s)	76, 334, 648, 651
BsgI	GTGCAG	1 cut(s)	341
BshFI	GGCC	2 cut(s)	83, 278
BsiHKAI	GWGCWC	1 cut(s)	465
BsiSI	CCGG	3 cut(s)	118, 428, 652
BslI	CCNNNNNNNGG	1 cut(s)	451
BsmAI	GTCTC	1 cut(s)	100
BsnI	GGCC	2 cut(s)	83, 278
Bsp1286I	GDGCHC	1 cut(s)	465
Bsp143I	GATC	3 cut(s)	4, 184, 199
BspACI	CCGC	2 cut(s)	403, 406
BspANI	GGCC	2 cut(s)	83, 278
BspCNI	CTCAG	3 cut(s)	19, 94, 214
BspLI	GGNNCC	1 cut(s)	510
BspPI	GGATC	3 cut(s)	12, 179, 207
BsrFI	RCCGGY	2 cut(s)	427, 651
BsrI	ACTGG	1 cut(s)	173
BssAI	RCCGGY	2 cut(s)	427, 651
BssMI	GATC	3 cut(s)	4, 184, 199
Bst2UI	CCWGG	1 cut(s)	389
BstC8I	GCNNGC	1 cut(s)	653
BstDEI	CTNAG	3 cut(s)	27, 102, 222
BstHHI	GCGC	1 cut(s)	94
BstKTI	GATC	3 cut(s)	7, 187, 202
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	3 cut(s)	4, 184, 199
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 661
BstNI	CCWGG	1 cut(s)	389
BstSCI	CCNGG	1 cut(s)	387
BstV1I	GCAGC	4 cut(s)	76, 334, 648, 651
BstX2I	RGATCY	2 cut(s)	4, 199
BstYI	RGATCY	2 cut(s)	4, 199
BsuI	GTATCC	1 cut(s)	395
BsuRI	GGCC	2 cut(s)	83, 278
BtsIMutI	CAGTG	2 cut(s)	180, 324
Cac8I	GCNNGC	1 cut(s)	653
CfoI	GCGC	1 cut(s)	94
Cfr10I	RCCGGY	2 cut(s)	427, 651
Cfr13I	GGNCC	2 cut(s)	82, 277
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	4 cut(s)	86, 281, 359, 534
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	3 cut(s)	27, 102, 222
DpnI	GATC	3 cut(s)	6, 186, 201
DpnII	GATC	3 cut(s)	4, 184, 199
Eco57I	CTGAAG	1 cut(s)	443
EcoRII	CCWGG	1 cut(s)	387
FaeI	CATG	4 cut(s)	89, 284, 362, 537
FalI	AAGNNNNNCTT	2 cut(s)	326, 358
FatI	CATG	4 cut(s)	85, 280, 358, 533
FauNDI	CATATG	3 cut(s)	60, 255, 583
Fnu4HI	GCNGC	5 cut(s)	90, 323, 406, 662, 665
Fsp4HI	GCNGC	5 cut(s)	90, 323, 406, 662, 665
FspI	TGCGCA	1 cut(s)	93
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	5 cut(s)	90, 323, 406, 662, 665
HaeIII	GGCC	2 cut(s)	83, 278
HapII	CCGG	3 cut(s)	118, 428, 652
HhaI	GCGC	1 cut(s)	94
Hin1II	CATG	4 cut(s)	89, 284, 362, 537
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HinfI	GANTC	1 cut(s)	469
HpaII	CCGG	3 cut(s)	118, 428, 652
HphI	GGTGA	2 cut(s)	505, 603
Hpy166II	GTNNAC	1 cut(s)	539
Hpy188I	TCNGA	6 cut(s)	28, 103, 184, 189, 223, 570
Hpy188III	TCNNGA	1 cut(s)	394
Hpy8I	GTNNAC	1 cut(s)	539
HpyAV	CCTTC	2 cut(s)	115, 189
HpyCH4V	TGCA	4 cut(s)	322, 333, 581, 602
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 661
HpyF3I	CTNAG	3 cut(s)	27, 102, 222
Hsp92II	CATG	4 cut(s)	89, 284, 362, 537
HspAI	GCGC	1 cut(s)	92
KroI	GCCGGC	1 cut(s)	651
KroNI	GCCGGC	1 cut(s)	653
Kzo9I	GATC	3 cut(s)	4, 184, 199
LmnI	GCTCC	1 cut(s)	672
LpnPI	CCDG	9 cut(s)	131, 186, 270, 312, 374, 401, 441, 479, 665
Lsp1109I	GCAGC	4 cut(s)	76, 334, 648, 651
MaeIII	GTNAC	1 cut(s)	398
MalI	GATC	3 cut(s)	6, 186, 201
MboI	GATC	3 cut(s)	4, 184, 199
MflI	RGATCY	2 cut(s)	4, 199
MhlI	GDGCHC	1 cut(s)	465
MluCI	AATT	2 cut(s)	435, 589
MnlI	CCTC	5 cut(s)	22, 217, 419, 564, 619
MroNI	GCCGGC	1 cut(s)	651
MseI	TTAA	1 cut(s)	434
MspI	CCGG	3 cut(s)	118, 428, 652
MspR9I	CCNGG	1 cut(s)	389
MvaI	CCWGG	1 cut(s)	389
MwoI	GCNNNNNNNGC	2 cut(s)	89, 661
NaeI	GCCGGC	1 cut(s)	653
NdeI	CATATG	3 cut(s)	60, 255, 583
NdeII	GATC	3 cut(s)	4, 184, 199
NgoMIV	GCCGGC	1 cut(s)	651
NlaIII	CATG	4 cut(s)	89, 284, 362, 537
NlaIV	GGNNCC	1 cut(s)	510
NsbI	TGCGCA	1 cut(s)	93
PdiI	GCCGGC	1 cut(s)	653
PfeI	GAWTC	1 cut(s)	469
PflMI	CCANNNNNTGG	1 cut(s)	451
PkrI	GCNGC	5 cut(s)	91, 324, 407, 663, 666
Psp6I	CCWGG	1 cut(s)	387
PspGI	CCWGG	1 cut(s)	387
PspN4I	GGNNCC	1 cut(s)	510
PspPI	GGNCC	2 cut(s)	82, 277
PsuI	RGATCY	2 cut(s)	4, 199
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
SaqAI	TTAA	1 cut(s)	434
SatI	GCNGC	5 cut(s)	90, 323, 406, 662, 665
Sau3AI	GATC	3 cut(s)	4, 184, 199
Sau96I	GGNCC	2 cut(s)	82, 277
ScaI	AGTACT	1 cut(s)	329
ScrFI	CCNGG	1 cut(s)	389
SduI	GDGCHC	1 cut(s)	465
SetI	ASST	5 cut(s)	23, 393, 500, 562, 616
Sse9I	AATT	2 cut(s)	435, 589
SsiI	CCGC	2 cut(s)	403, 406
StyD4I	CCNGG	1 cut(s)	387
TasI	AATT	2 cut(s)	435, 589
TatI	WGTACW	1 cut(s)	327
TauI	GCSGC	1 cut(s)	408
TfiI	GAWTC	1 cut(s)	469
Tru1I	TTAA	1 cut(s)	434
Tru9I	TTAA	1 cut(s)	434
TscAI	CASTG	2 cut(s)	180, 324
TseI	GCWGC	4 cut(s)	89, 322, 661, 664
TspDTI	ATGAA	1 cut(s)	347
TspRI	CASTG	2 cut(s)	180, 324
Van91I	CCANNNNNTGG	1 cut(s)	451
ZrmI	AGTACT	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.