RLG00000020335

Vacuolar protein sorting-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001657
Physical Location & Seq
Forward (+)
63814814 .. 63842688
27875 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020335

Sequence Viewer

Length: 10308 bp
ATGTTGGAACGACTCGTCACTCAGGTTCTTGACGGCTATCTCGGTCGCTACGTCAAGGATTTTCACAAGCACCAGCTCAAGATCACCATTTGGAATGAGGAAGTGTTCTTGGAAAACGTCGAGCTTAGTCTCGAAGCCTTTGATTATCTCCAGTTGCCTTTCGCTCTCAAACAAGGTCGGATTGGAAAGATAAGCATCAAAATTCCATGGAAAACGCTTGGTCGGGACCCCTTTGTAATTAGTTTGGAAAATGTCTTCCTATGTGCATCCCAACGAGATGATGAAGAGTGGAGTTTGGATGAAGTTGAAAAACGAGAGTTTGCTGGAAAAAAGGCCAAACTTGCTGCAGCAGAACTGGCCAAATTATCAAAACGTGTATGCGAAAACCAGGCTGGGCTTAGATCAATAATTACTGCTAAGGTTCTTGACAGCATCCAAGTGTCAATCAGAGATTTTCATATCTTGTACCATGACAAGCTCAGTGGTTCGGCATGTAATATTTTTGGTTTGAAGTTTTCCAGCTTGAGGACTATGAAGCAAAATCCTTCCGGGCCACTTGCAAAGGGAAGAGGAGGCCAAGTTAACAAAACTGTGGAGATTATGGGTTTGGAGTTTTACTGTGGCACACTTGATGGGGCTGCGGAGTTGATGGCTATGAACAATGATGGGGACTCCGTAGTATGGCAAGATATAAGATATGATGGGAAAAGATATAACAACTCCATACTGTCACCATGTGATGTTTCCATGTCACTCTCGGTCAACAGATCAGGAGAGCTTGATAGCAAAATCCCACAGTACTCCATCACCGCTGAGATAACTGACTTGGTGATGTCCTTAGATGAGGTTCAGTTGCAACAGATTTTGTTTCTGTGGGATTATTTTTGTACATGTGAATTGAGGAATAAGTATGGGCGATATCGTCCCTGGAGTAGTCCATTATCAAAAAAGGTGAAGGGTTGGCAAATGTTGTGGTGGCATTATGCGCAAAAGTCTATCTTATCAGATGTACGGAAGAGATTAAAGAAAACATCGTGGAGACACTTTGGACAGAGACTAAGCTCTTGTCGGAAGTATGTTAACCTATATAAGACTAAGTTGGATTTTCTTCGCCATGATCAGCCAATTGATGAAAGTACTCGATGGGAATTGGAGCAGATGGAGAAAGAATTAGACATAGATGATATTTTAAGTTACAGGTCGGCTGCAGAATGTGAGTTGCAGGAGTTTTTGGTGAACTCTTCAACTGGAAAATCCCGTGGATGGCTGAACTGGCTATCTCTTGGTATGCTTGGTGCTGGAGGAACAGATGACTTGGGTCAATTTTCTGGGGCTGTTTTTGTTTCTGATGCAGTTATTAAGGATATATGTGAGGCAACAAAGTTCAATCCTCCTATTTTATCCAATGGGGATGCTCAAACAACTGATAAGATTGATATATGCGCACTCCATTTCAGCATCAATCGGATTTCTGCAACACTGCGTAACATGAAGTATGGCCAAGAAATTGCAGAGTTAATGTTGAATGGGGTGACTACGGAGTGTAAATTTAGGGAAGAATCTGCAGCCATTGTCGCCATTGTGAACTCAGGGCAGATGGTTTATCCTTGTAACAAGAAAGTCATTCTGCATTTGCGAATGCCTAATAATGAGAAGAACGAACTGGAAAACGAGAATCCTTCCTGTAAATTGCAAGTGGATGTATCATCAAACCTCGAGGCTGAATTGTCCATTAAGGGGATGCTTCAACCATTAGAAGTCACCGTTGATGCAGAATTTTTCTTAAAGTTAATGGATTTTCTTGGAGCTTTAAAATCCTTTGAAAGTCAGCATGGAAGGGTCCTTCTGTCGCTAAATGGGATAGAAAATGTCAATGGTCGACTGTTGTCGAAAGCTGAATACCTTTTATCACGTCATAGGAAAGTGGTGTGGGATGTTACTATCTTCAATATCATCATAAATGTTCCTTGGAGAGATACAATATCCGATCCACATAACTTGGTTTTTGAAGCAGGCTCTCTTCTTTTTAGGACTAAATGTGATATGGGATCTCGGCCATCAGCTGATGAGGAACAATTTTATAATCTGAAAAAGTTCTTAACTTCAGTTTCCAGCTGTAATATTTCTCCGTGTGTCCAAATTCAAGATCTGTATGAACACTATGAGGTCAAGTTAAATGATTTTGAGTTGAAGGTAACGATGCCTTCTCATTCTTCTCCAATTTCTATCTTGGAGAAACTTAGTCCTTCTGTGTCCTTTGCATTTTGCTTGATCCAAGATGAGTCAATATTGAAACAGTTGGAGGCTTGTGTCATTGTATCATCACTTCATGCACATTTTTCTCCATCGATATATGCTGCAATGCTGGGATTGATAGAATATCTAGGTGCTCTGCAATTGAAGTTTGATTCTCTACCCTTGGAAAGTATTGATTCACTTGATGCCACATCAAATGGATTAGGGAATCCTGTTTTCGGTTTCTCTACCAATGTCAAACTGGAGACAGTGAAGATTGAAGTCGAACTGGAAAATGAGAAAGAAAATAGCTCGTCATTCATGCTTAAATTCCAACAATTGGACATGGGTTATTCGCTTTCAAAAATTGAGGAATGCTGGATCTTAATGAACGCATTGAGTATCACCACTTCTAAATTGGCTGATAAAAGTGATAGTCGGATTTTGTATTCATCTGGAAATCAATCATCTATGAATGCTTTACATCCACATGAGATTGGGATTGACAATAGGAATGATCATTTTGCCAACAACGTTGGAAATAATGAAGCATGCTTTACTTTACAATATGAATCTCATCCGAAGGAGACAGTTCCTCAAAAATGTAGAATATGCTTGAATAACGGTGATCTCCACTGCTACCCATATGTTATCCGGCTTCTGGTTGCATTTTTTGATAAACTTTCTACATATGGTGCATCTAATCCTGGTAAGAACACCTTGAGCTCATCTGTGGATGCTAGGTATCCAAAAAGTGTTACTGGTTTTGGGTTTCAAAGGTTTGGTTTCTCCAACTTTGTAGAAATCGGGTCCTCTGAGTATGCAAGCATACCTTTAGATCATTTTCCTTTTGTTATGCTATCAAATGCTGGTTCCCTTGGTAATCTTGAAAGTTCCTTGCTTTATGCCAGTCCTGAGTGGAGAAAGTATTTCAGTTTAAGGGACAGCAGAATCAGCAGCCCAAAATCCAGCATAAAGGAGGTATCTAAAAAGTTTCATGCCCCAGCATTGAAGTACTCATCTGTGGTTGAAACTTCTGCTGCGTGTCGGAGTTCTGCTACTACTAGTAGTCCGCTTGTAATTGATGTCGATCTCTGTGGAATCAGAGTGCATTTTCATGATTCAAAATGCATTGTTGGAACAATTACCCTGCCTAGGTCCAACTCTTCAGTAGTAATTTCTCAAAACAGCTTTGATGTATTGTGTTCTACTGAGGGGTTAGTTCTCAGTTCATCTTGGTCGTCACAGAATTTCCGCGAGTTTCTGTGGGGCCCCTCGGTCTCGAATTTATCTCCTATTTTAAATGTACGTGTGAGGAAAGAATCTGGGCCATTGAGTTCGCATGTTGAACTATGCTTCAGCATACAGCATGTATATTGCATCTTACCTCCTGAATATCTGGCCATAATAATTGGTTACTTTTCATTGTCTGATTGGAGTTCAGATTCTAATGACCAGCTTATCACCATAGGGCATGAAGATACTGAAAGTGAAAGTGAATGTTCCTTTGTCTACAAGATTGAGATACTGGACTCTGTTTTAGTTGTGCCCGTGGAAAGCAACGAGGGTCAGTTTCTAAAGAGTGAACTTCAGCAGTTCTACTGTACATTTATTCAAAGCAGTTCAAACAATGTATTGAAGGACATTCCCCATGAATGTTGGGTCCCAACTGATAAACTTGCTAAAAGAAATCATTGTTTAAATTTATTTGGACGAGACTTGTTTCTATCATTCTTGTCTTTCAAGGACAATCAATACAGTTCCTCTGTAGATGTGCCGTTAATTGCTTCCCTATGTGCTGACGTTTGGGTGAAAATACCTTGTGAAAGTGAATCGTCATGTGAAAGCTCTCCCTCAAACATTTGTGTCATGATCAGAGTTGGAAACTGTCAGCTTAAGCCTGAGGATTATCACTTTTTTTATGGATTTGAGGGGCTAAATGATATCATAAATCAATTTTCTGTAGTTTCTGATGTAGCTGAATGTTTCAAGTCTGATGTTCTACAATTTCTTCAGTCAAAAAGGTGCTTAGCACAGAAAAATGCAGTTCCACCTGTTGTTTCAAGCATTAATTACACCGAAGTTAGATGCTATATCAATTCATTGTTGATACAGTTGAATCCCTGCCAAAGAGTCTCAGAAGACCCTATTGCTACTGCTGAAATGAAATTCATCTGCTCTGCATCATTGAGAAATGACACTCTCTTAAGTGTAGCTCTAAGTTTTTCGTCCCTAGAAATAGGTTCATTACCTAATTCTTTTGTATTAGCAAGATGCAAGTCCACAAGCTCAACCTCGTCAGTTCTTGAATTTTCTCTTACCAAAGAAAAAGATGGTGTAAATGAACTTCATGTTTCCTTGCCTTGTGTTGAAATGTGGTTACATTTGTCTTACTGGAATGAGGTTGTTGACTTTTTCAAATCTTGTGTTGGACAATCATCCACAAGTCTGCCGGACAACTTAGAGCAGGACACTGATGCCCTCATTGTGAGCTCAGAGAATATTTTCATTACATTTTACTTACCCGTTTGGATCGGTGACCAAGCTTTTGGGGAATATCAAGGAGGGGAATGTCATGGAGATGGCTCTACAAATGGTTTATCTGACATAGTTGAAGCAAAAGCCTTTAGGTCCATTGCAGTTACTTTGTGCAGTAGAAGTAGTGAACTTTTTGTTGATGGAACAAATGTGAAAGTGAAATCCGACATAGAAAAACTGGAGGGCATGGTATTGGTAAGCCAGGATGGAAGTGTTCAATCTTCACCCTTTTTCCAAATATCTCAGGTGCTTTTGGTAGCTGACATAAATAACCGTATGGAGCTTATGCATGTTGAAGTAGATGTTCAATGTGATCATTTAGATGTATGGATTTCACACAGCATTCTCTACTTGTGGCATGGTGTACAATTCAGTGTTGCTGAAGGAGGGCCTTCTCAATTTTCTTTTGGTAGAATTGATGTTAAAGTCCAGCTTAGGAAGGTTTCTTTTATGCTGAGCGATGGAAGGTGGAGTTGTAGTGGACCCCTGTTTCAGCTTCTTTTGGGGAACGTGCTCTTGCACATCACTGTGACTGAAAATAACCTCGAAGGTTTAGTTTCGGGTGACCTTCAAGTGAACTACAATAACATTCACAAGGTGTTCTGGGAGCCTTTTATTGAACCTTGGCAGTTTGAGGTCAATGTGATTAGAAAACAAGAGATGAGTCTCAGCAGCTCCAATTTGACAGATATCCATCTGAAATCAGCTGCACACCTTAATGTGAACTTTACTGAATCCCTTATAGAGTGTGTTTTCAGGACAGTTGAGATGATCAAGGATGCTTGGGTTCTAGTGAGTCCAAATGATCTTCCTGAAAGCCAAAACTTATTATATTCTCCGTTTGCAAAGCACACATATGCAGGAAAATATGCTCCTTATGTACTTCAAAACTTGACATCGCTACCTCTAGCATATCATGTTTATCAAGGCCCAATTAATTCTGATGAGTTGGATGTCTCAGAAACGAATAGAAAATATGTGCAACCAGGTTCTTCTATTCCAATATATATCGATGATACTCCTGAGAAACAACTTGTTCATGTTAAGCCAGCACACTTCTCTGAGAGACTTTTTGACCAGAAGGCAAATGGGGTTCGCCATCAGTATATTACCATTCAACTTGATGGAACATCAGTGCCTTCTGAACCGATTTCAATGGATCTTGTAGGACTTACCTACTTTGAGGTTGATTTTTCTATGTCATACAGTGACAATATGGAAAACCATAGAACAAATGCCAATGCTGGTTTTGTTGTTCCTGTTGTCTTTGATGTTTCAGTGCAGCGGTACAGCAAATTAATCCGATTATACTCAACGGTTATACTTTCGAATTCAACTTCCATGCCATTGGAGCTGCGATTTGATATTCCATTTGGTGTGGCCCCAAAGATCTTAGATCCAATATATCCTGGTCAAGAGTTACCGCTGCCTCTACACTTGGCCGAAGCTGGTAGGATTAGATGGCGTCCAATTGGAGATTCTCATCTCTGGAGTGAAGTTTATAACCTCTCAAACCTGCTTTCCCAGGAGGGCAAAATTGGATTTCTCAAGTCTTTTGCTTGCTATCCAGCCCATCCCAATAGTGATCCATTTCGCTGTTGTATCTCAGTTAGAAACGTCAGTTTACCTTCACCTGTTAGGTCAAGAAAGAGTTCTTTAAAGCAAACAGTTGCAAGTGGTGGGCAAATATTGCACAAGGATGAGGCAAAAAAGCAGTTTATTCACCAAGTAATCCTCAGTATCCCTTTAGTAGTGAATAACTATCTTCCCGATGCAGTGACATTGACGATAGAAAGCGGTGGGATTACCCGGACTGCATTTCTTTCAGAGGCGGAAACATCTTTTCATAATGTTGATCCTTCTCATCAGCTGAGATTGGAGATCCATATGCATGGATTTAAAACAGCTATTTTGGATTTTCCACGGACTGAAATATTCTGTAAAAAGGCTAAGTTTCGTGGAACGAAGTTCTCACTTTCTGAAATTGTGACCTTCGACAGAGACTCAACAAATGGTCCAATGTATGTCACAGTGGAAAAGGTGATGGATGCATTTTCTGGAGCCAGGGAACTCTTTATCTCTGTTCCATTTCTGTTATATAATTGCACTGGCTTTCCGCTCTTCATTTCTGAATCTTCCAGTGAAATGAAAGGAGTAAGCTGCCTTGTGCCTTCTTGTTATGATATGGCTGATAAAGAAGTACTTCAGGGAAAAAAGGATGGTCTTGGTCTGGTATCTTCTAACCATAATCCAAATGCTAGAGATTCACATACAATGGGAAGTTCTTCCTCAAGAGTTCACATTGTCTCAATTAGAGACAATGCTACAACTCACAAAGAAATAAGTTTTAGCAAGCCTCTTTACTCTGAAGACAACTATCATGAGCTTTTAAGCAAACGTAATTTAGACAGGGAAAACTCACTTTCCCACAGTTCACAGAATAGATCGAGTTCAAGCAGTCAGTTGACCTCAAAAGATTTGAACTCTAGTGGTTATGAGCGTGGAAGAGTAAGGGCATGCATGTTCTCTCCTAATCCGATTTCCTCTGCTGGTGAAGTAATGGTTAGAGTGAGTAGGTGTATGCCTGAATATGTGACGGAAAAGATGCCAAATTCTCTATGGTCAAGTTCATTTCCCCTTATTCCACCTAGTGGTTCAACTACTGTCCTTGTTCCTCAACCATCGTCAAATGCGGCTTTTATGATGTCCATTACGTCCAGTGCAGTTGCCACACCATTTGCTGGGAGGACAAGTGCAATTACCTTCCAACCTAGGTACATCATCAGCAATGCATGCAGTAAGAACTTATGTTATAAGCAGAAAGGAACTGAATTTTCTTTTCAATTGGGTACAGGTGAACATTCTCATCTTCACTGGATGGATACAACCAGGGAGTTACTCGTTTCAATTCGTTATGATGAGCCTGGATGGCAATGGTCAGGTGGCTTCTTGCCAGACCATCTCGGTGACACTCAAGTGAAAATGCGGAATTATCTTTCTGGTTCCTTAAATATGATACGGGTTGAAGTGCAAAATGCTGACATCTCTGTGGGAGATGAAAAGATTGTTGGAAACTTCTATGGAAATTCTGGGACAAACTTGATTCTTATATCAGATGATGAGACTGGGTATATGCCCTACAGGGTTGATAATTTTACTAACGAGAGGCTAAGGATCTACCAACAAAGGTGTGAAACCTTTGAGACTATTGTTCAGTCTTACACTTCTTGCCCTTATGCCTGGGACGAACCATGCTATCCACATCGTCTCACTGTGGAGGTACCTGGTAAGCGTGTTTTAGGGTCATATGCTCTTGATGATGTAAAAGAATACAGTCCGGTGCAATTACCATCATCTCCTGAGAAACCTGAGAGAACATTGCATATATCCATCCATGTTGAGGGAGCAACAAAGGTCCTCCATGTTATTGATTCAAGTTACCATGTCTTGAATGCCAACAGAAGTATCAGTCTACCTCACTTAAAAGACAAGGGGAAGCATGAACAGAAACAGGACAAGTTTATTGGTTTCATGGAAAGAATTTCAGTTTTTATTCAACAGATTGGCATCTCTTTGATCAATATTCACCCTCAGGAGTTGCTTTTTATATGTGCAAAGAGCATTACAGTTGATCTGGTACAGAGTTTGGATCAACAAAAACTTTCCTTCCAAATCGCATCATTGCAAATCGATAATCAGCTTCGATCTTCCCCATATCCTGTTATGTTGTCTTTTGACAAAAACAATCCAGCTGGCCATGTGATTAGGGAGGATGACATTAAACCAAGTGAAAGGATTTTGCAAAGGACTTCTCGCAATTTTGAACCTGTATTCTGCCTAGCCGTATCTAAGTGGAGGAAGAAAGATGTCTCACTGGTTTCGTTTGAATACATAAGCTTAAGAGTTGCAGATGTTTGTCTTGAGCTTGAACAAGAATTGATATTAAGCCTATTTGGCTTCATAAGAAATGTATCTTCAAGGTTCCAGAGTAGAGTCTTGCCATTATCAGATCCATTCCTGCACCATCCTTCTAATGATGCTGGCTCAATGGATGCGTATGTAACTGATAACCAACTTCACTTAATGAATGTTCCTCTGCTTAATGAAAACCACAAGCAGAGACTCTCACTACCTTCAATAGTTCCGTTTGGAGCTCCTTGGCAGCAAATTTACCTTTTAGCTAGAAGACAGAAAAAGATATATGTAGAAGTGTTTGAATTTTCCCCCATCAAGTTGACCCTAAGCTTTTCCAGCACTCCATGGATGCTTAGAAATGGAATTCTTGCAGCAGGAGAATCTGTTATTCATAGAGGTCTGATGGCTCTTGCTGATGTGGAGGGTGCACGAATTCATCTTAAGCAGTTGACAATTGCACATCAAATTGCTAGCTTGGAGTCTCTACAAGAGATCCTTATGAGGCATTATACTCGGCAACTTCTTCATGAGATGTATAAGGTGTTTGGTTCAGCTGGTGTAATTGGCAATCCGATGGGATTTGCAAGGAGTTTAGGGCTTGGCATTAGAGACTTCTTGTCAGTGCCTGCCAGAAGCATTTTTCAGAGCCCTACTGGATTAATTACTGGCATGGCACAAGGCACGACTAGTCTCCTAAGTAATACTGTCTATGCTATAAGCGATGCTGCCACCCAATTCAGCAAAGCTGCACACAAGGGAATTGTGGCATTTACGTTTGATGACCAGGCTGTTTCAGGGGTGCAACAGCAACAGACTGGTATAGCATCTCACTCTAAAGGTGTTATCAATGAAGTATTTGAGGGACTCACAGGTCTTCTTCAATCACCGATCAATGGAGCTGAGAAACATGGTCTTCCTGGTGTGCTCTCAGGCATAGCTTTAGGTATTACAGGACTTGTGGCCAAACCAGCTGCTAGTATTCTTGAAGTTACAGGAAAAACTGCACAGAGCATTAGAAACCGAAGTAGGATCTATCAAACAGGACAACAGCGCTTTAGAGTCCGTCTTCCAAGGCCTCTGAGCCGAGAATATCCCTTAAGACCTTACTGTTGGGAAGAAGCTGTTGGAGCATCGGTACTTGTTGAGGCAGATGATAGTTTGAGGCTCAAGGATGAAATTTTTGTTATGTGCAAGAAACTTAAAGAAGCTGGTAAATTTGTCATCATCACAGAGAGACTGGTTTTGATTGTAAGCTGCTCGAGTTTGGTGGACTTGGGTAAGCCTGAATTTCGTGGTGTTCCTTCTGATCTCAAATGGGTGATTGAATCAGAAATTCATTTGGAGAGTGCGATGCATGCTGACTGCGATCAAGGAGTAGTTCATATTGTCGGCAGCAGCTCAAATACGCCTTTGCGTCAAAACCAGTTAGCCAAAAGAAGCAGTGGAACAAGGACGGTGCGTTGGAATAATCCTACTGTTCCCCTCATTCAGACTAACTTGGAACTGGAACACAAAGAAGATGCGGAGAACTTGTTACAGGTTTTATTGTCTACAATCGAACTGGGAAAAGACCAAGGTTGGGGTTGTAGGAATATTCTGCACCGAAGTAATATCAAATAG

Protein Analysis

3436

Amino Acids

384.88

Weight (kDa)

6.01

Isoelectric Point (pI)

47.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VPS13_N PF12624 1 - 726 7.4e-75 VPS13-like family N-terminal region
VPS13_M PF25033 1764 - 1849 6e-08 VPS13-like family middle region
VPS13_VAB PF25036 2014 - 2305 4.9e-09 Vacuolar-sorting associated protein 13, adaptor binding domain
VPS13_VAB PF25036 2412 - 2676 9.2e-24 Vacuolar-sorting associated protein 13, adaptor binding domain
VPS13_C PF25037 3250 - 3319 1.2e-08 Intermembrane lipid transfer protein VPS13, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 2082, 6276, 7587
AasI GACNNNNNNGTC 1 cut(s) 9558
AbsI CCTCGAGG 1 cut(s) 1715
Acc16I TGCGCA 2 cut(s) 987, 1444
Acc36I ACCTGC 1 cut(s) 6297
Acc65I GGTACC 1 cut(s) 8053
AccB1I GGYRCC 1 cut(s) 8053
AccB7I CCANNNNNTGG 3 cut(s) 2575, 7424, 7514
AccBSI CCGCTC 1 cut(s) 6892
AccI GTMKAC 4 cut(s) 1879, 3747, 8245, 10238
AccII CGCG 1 cut(s) 3492
AclI AACGTT 1 cut(s) 2769
AcoI YGGCCR 7 cut(s) 357, 1498, 2054, 3636, 6213, 8527, 9648
AcuI CTGAAG 8 cut(s) 2088, 3387, 3577, 3809, 4232, 5175, 6962, 7161
AcyI GRCGYC 1 cut(s) 6238
AdeI CACNNNGTG 3 cut(s) 737, 5371, 7424
AfeI AGCGCT 1 cut(s) 9740
AflII CTTAAG 5 cut(s) 4130, 4441, 8671, 9128, 9784
AflIII ACRYGT 3 cut(s) 373, 890, 3544
AhdI GACNNNNNGTC 1 cut(s) 9304
AhlI ACTAGT 2 cut(s) 3299, 9374
AjiI CACGTC 1 cut(s) 1913
AjuI GAANNNNNNNTTGG 6 cut(s) 6235, 6267, 7824, 7856, 9795, 9827
AleI CACNNNNGTG 1 cut(s) 7748
Alw21I GWGCWC 7 cut(s) 2392, 2963, 4730, 5289, 8929, 9118, 9615
Alw44I GTGCAC 1 cut(s) 9114
AlwNI CAGNNNCTG 1 cut(s) 9314
Ama87I CYCGRG 2 cut(s) 1715, 9946
Aor51HI AGCGCT 1 cut(s) 9740
ApaI GGGCCC 1 cut(s) 3509
ApaLI GTGCAC 1 cut(s) 9114
ArsI GACNNNNNNTTYG 2 cut(s) 4766, 4798
AseI ATTAAT 4 cut(s) 4305, 5709, 6071, 9347
Asp700I GAANNNNTTC 5 cut(s) 2093, 4739, 6424, 6975, 7057
Asp718I GGTACC 1 cut(s) 8053
AspA2I CCTAGG 2 cut(s) 3389, 7544
AspLEI GCGC 3 cut(s) 988, 1445, 9741
AsuC2I CCSGG 2 cut(s) 550, 6583
AsuII TTCGAA 1 cut(s) 6101
AsuNHI GCTAGC 1 cut(s) 9158
AvaI CYCGRG 2 cut(s) 1715, 9946
AvaII GGWCC 9 cut(s) 226, 1840, 3045, 3393, 3898, 4866, 5255, 6788, 8188
AvrII CCTAGG 2 cut(s) 3389, 7544
AxyI CCTNAGG 2 cut(s) 4137, 8364
BaeGI GKGCMC 3 cut(s) 3509, 3786, 9118
BaeI ACNNNNGTAYC 2 cut(s) 8221, 8254
BalI TGGCCA 5 cut(s) 359, 1500, 3638, 8529, 9650
BanI GGYRCC 1 cut(s) 8053
BanII GRGCYC 5 cut(s) 2963, 3509, 4730, 8929, 9338
BarI GAAGNNNNNNTAC 6 cut(s) 2310, 2342, 2629, 2661, 4566, 4598
BbsI GAAGAC 7 cut(s) 247, 4383, 7149, 8965, 9554, 9593, 9746
Bbv12I GWGCWC 7 cut(s) 2392, 2963, 4730, 5289, 8929, 9118, 9615
BceAI ACGGC 3 cut(s) 49, 3997, 8600
BcgI CGANNNNNNTGC 2 cut(s) 9182, 9216
BciVI GTATCC 3 cut(s) 2991, 6524, 7648
BclI TGATCA 6 cut(s) 1117, 2752, 4107, 5086, 5544, 8349
BcnI CCSGG 2 cut(s) 550, 6583
BcuI ACTAGT 2 cut(s) 3299, 9374
BfmI CTRYAG 6 cut(s) 345, 1206, 1563, 4002, 4197, 7912
BfoI RGCGCY 1 cut(s) 9742
BfrI CTTAAG 5 cut(s) 4130, 4441, 8671, 9128, 9784
BfuAI ACCTGC 1 cut(s) 6297
BfuI GTATCC 3 cut(s) 2991, 6524, 7648
BglI GCCNNNNNGGC 2 cut(s) 7702, 8727
BglII AGATCT 2 cut(s) 2146, 6162
BlnI CCTAGG 2 cut(s) 3389, 7544
BlpI GCTNAGC 2 cut(s) 4264, 5228
BmcAI AGTACT 4 cut(s) 800, 1138, 3251, 6975
Bme18I GGWCC 9 cut(s) 226, 1840, 3045, 3393, 3898, 4866, 5255, 6788, 8188
BmeRI GACNNNNNGTC 1 cut(s) 9304
BmeT110I CYCGRG 2 cut(s) 1715, 9946
BmgBI CACGTC 1 cut(s) 1913
BmrI ACTGGG 2 cut(s) 7908, 10259
BmtI GCTAGC 1 cut(s) 9162
BmuI ACTGGG 2 cut(s) 7908, 10259
BoxI GACNNNNGTC 2 cut(s) 1317, 1885
BpiI GAAGAC 7 cut(s) 247, 4383, 7149, 8965, 9554, 9593, 9746
BpmI CTGGAG 7 cut(s) 134, 949, 1320, 2519, 4973, 6283, 6852
Bpu10I CCTNAGC 4 cut(s) 417, 5207, 7943, 9014
Bpu1102I GCTNAGC 2 cut(s) 4264, 5228
Bpu14I TTCGAA 1 cut(s) 6101
BpuEI CTTGAG 8 cut(s) 62, 544, 2977, 6305, 7048, 7731, 8714, 9839
BpuMI CCSGG 2 cut(s) 550, 6583
Bsa29I ATCGAT 3 cut(s) 2348, 5784, 8463
BsaAI YACGTR 1 cut(s) 3545
BsaBI GATNNNNATC 5 cut(s) 194, 3324, 5466, 6255, 8339
BsaHI GRCGYC 1 cut(s) 6238
BsaI GGTCTC 1 cut(s) 3520
BsaWI WCCGGW 1 cut(s) 8110
Bse21I CCTNAGG 2 cut(s) 4137, 8364
Bse3DI GCAATG 6 cut(s) 2367, 4869, 7567, 7712, 8150, 8453
Bse8I GATNNNNATC 5 cut(s) 194, 3324, 5466, 6255, 8339
BseCI ATCGAT 3 cut(s) 2348, 5784, 8463
BseJI GATNNNNATC 5 cut(s) 194, 3324, 5466, 6255, 8339
BseMI GCAATG 6 cut(s) 2367, 4869, 7567, 7712, 8150, 8453
BseRI GAGGAG 1 cut(s) 585
BseSI GKGCMC 3 cut(s) 3509, 3786, 9118
BseYI CCCAGC 4 cut(s) 392, 2365, 3238, 7514
BsgI GTGCAG 8 cut(s) 4906, 5466, 6074, 7515, 8777, 9420, 9675, 10271
Bsh1236I CGCG 1 cut(s) 3492
Bsh1285I CGRYCG 1 cut(s) 46
BshNI GGYRCC 1 cut(s) 8053
BshVI ATCGAT 3 cut(s) 2348, 5784, 8463
BsiEI CGRYCG 1 cut(s) 46
BsiHKAI GWGCWC 7 cut(s) 2392, 2963, 4730, 5289, 8929, 9118, 9615
BsiHKCI CYCGRG 2 cut(s) 1715, 9946
BsiSI CCGG 5 cut(s) 549, 2890, 4688, 6583, 8111
BslFI GGGAC 9 cut(s) 239, 683, 909, 3191, 3884, 4450, 7879, 8030, 9564
BsmBI CGTCTC 1 cut(s) 8045
BsmFI GGGAC 9 cut(s) 239, 683, 909, 3191, 3884, 4450, 7879, 8030, 9564
BsmI GAATGC 5 cut(s) 1644, 2615, 2716, 5115, 8230
Bso31I GGTCTC 1 cut(s) 3520
BsoBI CYCGRG 2 cut(s) 1715, 9946
Bsp119I TTCGAA 1 cut(s) 6101
Bsp120I GGGCCC 1 cut(s) 3505
Bsp1407I TGTACA 3 cut(s) 887, 3839, 5137
Bsp1720I GCTNAGC 2 cut(s) 4264, 5228
Bsp19I CCATGG 2 cut(s) 206, 9032
BspDI ATCGAT 3 cut(s) 2348, 5784, 8463
BspFNI CGCG 1 cut(s) 3492
BspHI TCATGA 4 cut(s) 3352, 4104, 7153, 9214
BspMAI CTGCAG 3 cut(s) 349, 1210, 1567
BspMI ACCTGC 1 cut(s) 6297
BspOI GCTAGC 1 cut(s) 9162
BspQI GCTCTTC 1 cut(s) 6899
BspT104I TTCGAA 1 cut(s) 6101
BspT107I GGYRCC 1 cut(s) 8053
BspTI CTTAAG 5 cut(s) 4130, 4441, 8671, 9128, 9784
BspTNI GGTCTC 1 cut(s) 3520
BsrBI CCGCTC 1 cut(s) 6892
BsrDI GCAATG 6 cut(s) 2367, 4869, 7567, 7712, 8150, 8453
BsrGI TGTACA 3 cut(s) 887, 3839, 5137
BssNI GRCGYC 1 cut(s) 6238
Bst6I CTCTTC 8 cut(s) 279, 562, 1010, 1246, 2025, 3406, 6899, 7273
BstACI GRCGYC 1 cut(s) 6238
BstAFI CTTAAG 5 cut(s) 4130, 4441, 8671, 9128, 9784
BstAPI GCANNNNNTGC 2 cut(s) 6463, 7566
BstAUI TGTACA 3 cut(s) 887, 3839, 5137
BstBAI YACGTR 1 cut(s) 3545
BstBI TTCGAA 1 cut(s) 6101
BstDSI CCRYGG 5 cut(s) 206, 1258, 3786, 6695, 9032
BstEII GGTNACC 2 cut(s) 4772, 5336
BstFNI CGCG 1 cut(s) 3492
BstH2I RGCGCY 1 cut(s) 9742
BstHHI GCGC 3 cut(s) 988, 1445, 9741
BstMCI CGRYCG 1 cut(s) 46
BstPAI GACNNNNGTC 2 cut(s) 1317, 1885
BstPI GGTNACC 2 cut(s) 4772, 5336
BstSFI CTRYAG 6 cut(s) 345, 1206, 1563, 4002, 4197, 7912
BstSLI GKGCMC 3 cut(s) 3509, 3786, 9118
BstUI CGCG 1 cut(s) 3492
BstV2I GAAGAC 7 cut(s) 247, 4383, 7149, 8965, 9554, 9593, 9746
BstXI CCANNNNNNTGG 3 cut(s) 4784, 6121, 6665
Bsu15I ATCGAT 3 cut(s) 2348, 5784, 8463
Bsu36I CCTNAGG 2 cut(s) 4137, 8364
BsuI GTATCC 3 cut(s) 2991, 6524, 7648
BsuTUI ATCGAT 3 cut(s) 2348, 5784, 8463
BtgI CCRYGG 5 cut(s) 206, 1258, 3786, 6695, 9032
BtgZI GCGATG 4 cut(s) 5247, 5655, 9423, 10052
BtrI CACGTC 1 cut(s) 1913
BtsI GCAGTG 4 cut(s) 1478, 2869, 6555, 10135
BveI ACCTGC 1 cut(s) 6297
CaiI CAGNNNCTG 1 cut(s) 9314
CciI TCATGA 4 cut(s) 3352, 4104, 7153, 9214
CfoI GCGC 3 cut(s) 988, 1445, 9741
ClaI ATCGAT 3 cut(s) 2348, 5784, 8463
CseI GACGC 2 cut(s) 6227, 10091
CsiI ACCWGGT 2 cut(s) 5758, 8056
CspCI CAANNNNNGTGG 8 cut(s) 463, 498, 953, 988, 1980, 2015, 7492, 7527
DraI TTTAAA 5 cut(s) 1812, 3537, 3936, 6432, 6673
DraIII CACNNNGTG 3 cut(s) 737, 5371, 7424
DrdI GACNNNNNNGTC 1 cut(s) 9558
DriI GACNNNNNGTC 1 cut(s) 9304
DseDI GACNNNNNNGTC 1 cut(s) 9558
EaeI YGGCCR 7 cut(s) 357, 1498, 2054, 3636, 6213, 8527, 9648
Eam1104I CTCTTC 8 cut(s) 279, 562, 1010, 1246, 2025, 3406, 6899, 7273
Eam1105I GACNNNNNGTC 1 cut(s) 9304
EarI CTCTTC 8 cut(s) 279, 562, 1010, 1246, 2025, 3406, 6899, 7273
EciI GGCGGA 1 cut(s) 6620
Ecl136II GAGCTC 3 cut(s) 2961, 4728, 8927
Eco147I AGGCCT 1 cut(s) 9763
Eco24I GRGCYC 5 cut(s) 2963, 3509, 4730, 8929, 9338
Eco31I GGTCTC 1 cut(s) 3520
Eco32I GATATC 3 cut(s) 920, 4180, 5464
Eco47I GGWCC 9 cut(s) 226, 1840, 3045, 3393, 3898, 4866, 5255, 6788, 8188
Eco47III AGCGCT 1 cut(s) 9740
Eco53kI GAGCTC 3 cut(s) 2961, 4728, 8927
Eco57I CTGAAG 8 cut(s) 2088, 3387, 3577, 3809, 4232, 5175, 6962, 7161
Eco81I CCTNAGG 2 cut(s) 4137, 8364
Eco88I CYCGRG 2 cut(s) 1715, 9946
Eco91I GGTNACC 2 cut(s) 4772, 5336
EcoICRI GAGCTC 3 cut(s) 2961, 4728, 8927
EcoO109I RGGNCCY 8 cut(s) 226, 1840, 3045, 3505, 3506, 3898, 5162, 8188
EcoO65I GGTNACC 2 cut(s) 4772, 5336
EcoRI GAATTC 3 cut(s) 6103, 9051, 9120
EcoRV GATATC 3 cut(s) 920, 4180, 5464
EcoT22I ATGCAT 7 cut(s) 3368, 5064, 6666, 6826, 7295, 7567, 10044
EcoT38I GRGCYC 5 cut(s) 2963, 3509, 4730, 8929, 9338
Esp3I CGTCTC 1 cut(s) 8045
FaqI GGGAC 9 cut(s) 239, 683, 909, 3191, 3884, 4450, 7879, 8030, 9564
FauNDI CATATG 5 cut(s) 2881, 2926, 5629, 6660, 8080
FbaI TGATCA 6 cut(s) 1117, 2752, 4107, 5086, 5544, 8349
FblI GTMKAC 4 cut(s) 1879, 3747, 8245, 10238
FriOI GRGCYC 5 cut(s) 2963, 3509, 4730, 8929, 9338
FspAI RTGCGCAY 1 cut(s) 1444
FspI TGCGCA 2 cut(s) 987, 1444
GlaI GCGC 3 cut(s) 987, 1444, 9740
GsaI CCCAGC 4 cut(s) 396, 2369, 3242, 7518
GsuI CTGGAG 7 cut(s) 134, 949, 1320, 2519, 4973, 6283, 6852
HaeII RGCGCY 1 cut(s) 9742
HapII CCGG 5 cut(s) 549, 2890, 4688, 6583, 8111
HgaI GACGC 2 cut(s) 6227, 10091
HhaI GCGC 3 cut(s) 988, 1445, 9741
Hin1I GRCGYC 1 cut(s) 6238
Hin6I GCGC 3 cut(s) 986, 1443, 9739
HinP1I GCGC 3 cut(s) 986, 1443, 9739
HincII GTYRAC 8 cut(s) 583, 763, 1081, 1880, 4645, 7239, 9009, 9138
HindII GTYRAC 8 cut(s) 583, 763, 1081, 1880, 4645, 7239, 9009, 9138
HindIII AAGCTT 3 cut(s) 4779, 8668, 9016
HpaI GTTAAC 2 cut(s) 583, 1081
HpaII CCGG 5 cut(s) 549, 2890, 4688, 6583, 8111
Hpy99I CGWCG 1 cut(s) 122
Hsp92I GRCGYC 1 cut(s) 6238
HspAI GCGC 3 cut(s) 986, 1443, 9739
KflI GGGWCCC 2 cut(s) 226, 3898
KpnI GGTACC 1 cut(s) 8057
Ksp22I TGATCA 6 cut(s) 1117, 2752, 4107, 5086, 5544, 8349
KspAI GTTAAC 2 cut(s) 583, 1081
LguI GCTCTTC 1 cut(s) 6899
MabI ACCWGGT 2 cut(s) 5758, 8056
MbiI CCGCTC 1 cut(s) 6892
MfeI CAATTG 6 cut(s) 1125, 2396, 2573, 6243, 7616, 9141
MlsI TGGCCA 5 cut(s) 359, 1500, 3638, 8529, 9650
MluNI TGGCCA 5 cut(s) 359, 1500, 3638, 8529, 9650
Mox20I TGGCCA 5 cut(s) 359, 1500, 3638, 8529, 9650
Mph1103I ATGCAT 7 cut(s) 3368, 5064, 6666, 6826, 7295, 7567, 10044
MroXI GAANNNNTTC 5 cut(s) 2093, 4739, 6424, 6975, 7057
MscI TGGCCA 5 cut(s) 359, 1500, 3638, 8529, 9650
Msp20I TGGCCA 5 cut(s) 359, 1500, 3638, 8529, 9650
MspCI CTTAAG 5 cut(s) 4130, 4441, 8671, 9128, 9784
MspI CCGG 5 cut(s) 549, 2890, 4688, 6583, 8111
MunI CAATTG 6 cut(s) 1125, 2396, 2573, 6243, 7616, 9141
Mva1269I GAATGC 5 cut(s) 1644, 2615, 2716, 5115, 8230
MvnI CGCG 1 cut(s) 3492
NciI CCSGG 2 cut(s) 550, 6583
NcoI CCATGG 2 cut(s) 206, 9032
NdeI CATATG 5 cut(s) 2881, 2926, 5629, 6660, 8080
NheI GCTAGC 1 cut(s) 9158
NmeAIII GCCGAG 3 cut(s) 2032, 9181, 9797
NsbI TGCGCA 2 cut(s) 987, 1444
NsiI ATGCAT 7 cut(s) 3368, 5064, 6666, 6826, 7295, 7567, 10044
NspV TTCGAA 1 cut(s) 6101
OliI CACNNNNGTG 1 cut(s) 7748
PaeI GCATGC 4 cut(s) 2790, 7293, 7569, 10046
PaeR7I CTCGAG 2 cut(s) 1715, 9946
PagI TCATGA 4 cut(s) 3352, 4104, 7153, 9214
PceI AGGCCT 1 cut(s) 9763
PciI ACATGT 1 cut(s) 890
PciSI GCTCTTC 1 cut(s) 6899
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PctI GAATGC 5 cut(s) 1644, 2615, 2716, 5115, 8230
PdmI GAANNNNTTC 5 cut(s) 2093, 4739, 6424, 6975, 7057
PflMI CCANNNNNTGG 3 cut(s) 2575, 7424, 7514
Ppu21I YACGTR 1 cut(s) 3545
PpuMI RGGWCCY 5 cut(s) 226, 1840, 3045, 3898, 8188
PscI ACATGT 1 cut(s) 890
PshAI GACNNNNGTC 2 cut(s) 1317, 1885
PshBI ATTAAT 4 cut(s) 4305, 5709, 6071, 9347
PsiI TTATAA 3 cut(s) 2082, 6276, 7587
Psp124BI GAGCTC 3 cut(s) 2963, 4730, 8929
Psp1406I AACGTT 1 cut(s) 2769
Psp5II RGGWCCY 5 cut(s) 226, 1840, 3045, 3898, 8188
PspEI GGTNACC 2 cut(s) 4772, 5336
PspFI CCCAGC 4 cut(s) 392, 2365, 3238, 7514
PspOMI GGGCCC 1 cut(s) 3505
PspPPI RGGWCCY 5 cut(s) 226, 1840, 3045, 3898, 8188
PspXI VCTCGAGB 2 cut(s) 1715, 9946
PstI CTGCAG 3 cut(s) 349, 1210, 1567
PstNI CAGNNNCTG 1 cut(s) 9314
PvuII CAGCTG 7 cut(s) 2063, 2115, 5480, 6643, 8525, 9242, 9659
SacI GAGCTC 3 cut(s) 2963, 4730, 8929
SalI GTCGAC 1 cut(s) 1878
SapI GCTCTTC 1 cut(s) 6899
ScaI AGTACT 4 cut(s) 800, 1138, 3251, 6975
SexAI ACCWGGT 2 cut(s) 5758, 8056
SfcI CTRYAG 6 cut(s) 345, 1206, 1563, 4002, 4197, 7912
Sfr274I CTCGAG 2 cut(s) 1715, 9946
SfuI TTCGAA 1 cut(s) 6101
SinI GGWCC 9 cut(s) 226, 1840, 3045, 3393, 3898, 4866, 5255, 6788, 8188
SlaI CTCGAG 2 cut(s) 1715, 9946
SpeI ACTAGT 2 cut(s) 3299, 9374
SphI GCATGC 4 cut(s) 2790, 7293, 7569, 10046
SseBI AGGCCT 1 cut(s) 9763
SspI AATATT 8 cut(s) 499, 2122, 2289, 4738, 6462, 6708, 8356, 10282
SstI GAGCTC 3 cut(s) 2963, 4730, 8929
StuI AGGCCT 1 cut(s) 9763
TaqII GACCGA 3 cut(s) 32, 748, 3502
TatI WGTACW 8 cut(s) 798, 887, 1136, 3249, 3839, 5137, 5653, 6973
TauI GCSGC 1 cut(s) 7469
TspGWI ACGGA 9 cut(s) 664, 1027, 1553, 2118, 5601, 6712, 7385, 8907, 9740
Van91I CCANNNNNTGG 3 cut(s) 2575, 7424, 7514
Vha464I CTTAAG 5 cut(s) 4130, 4441, 8671, 9128, 9784
VneI GTGCAC 1 cut(s) 9114
VpaK11BI GGWCC 9 cut(s) 226, 1840, 3045, 3393, 3898, 4866, 5255, 6788, 8188
VspI ATTAAT 4 cut(s) 4305, 5709, 6071, 9347
XcmI CCANNNNNNNNNTGG 4 cut(s) 2494, 2650, 5858, 7389
XhoI CTCGAG 2 cut(s) 1715, 9946
XmaJI CCTAGG 2 cut(s) 3389, 7544
XmiI GTMKAC 4 cut(s) 1879, 3747, 8245, 10238
XmnI GAANNNNTTC 5 cut(s) 2093, 4739, 6424, 6975, 7057
ZrmI AGTACT 4 cut(s) 800, 1138, 3251, 6975
Zsp2I ATGCAT 7 cut(s) 3368, 5064, 6666, 6826, 7295, 7567, 10044
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.