Rroxscaffold_2G00098910

Vacuolar protein sorting-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001657
Physical Location & Seq
Reverse (-)
20388874 .. 20409904
21031 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00098910.1

Sequence Viewer

Length: 9405 bp
ATGCTTGGTGCTGGAGGAACAGATGACTTGGGTCAATTTTCTGGGGCTGTTTTTGTTTCTGATGCAGTTATTAAGGATATATATGAGGCGACAAAGTTCAATCCTCCTATTTTTTCCAATGGGGATGCTCGAACAACTGATAAGATTGATATATGCGCACTCCATTTCAGCATCAATCGGATTTCTGCAACACTGCGTAACATGAAGTATGGCCAAGAAATTGCAGAGTTGATGTTGAATGGGGTGACTACGGAGTGCAAATTTAGGGAAGAATCTGCAGCCATTGTCACCATTGTGAACTCAGGGCAGATGGTTTATCCTTGTAACAAGAAAGTCATTCTGCATTTGCGAAGGCCTAATAATGAGAAGAACGAACTGGAAAACGAGAATCCTGCCTGTAGATTGCAAGTGGATGTATCATCAAACCTCGAGGCTGAATTGTCCATTAAGGGGATGCTTCAACCATTAGAAGTCACCATTGATGCAGAATTTTTCTTAAAGTTGATGGATTTTCTTGGAGCTTTAAAATCCTTTGAAAGTCAGCATGGAAGGGTCCTTCTGTCGCTAAATGGGATAGAAAATGTCAATGGTCGACTGTTGTCGAAAGCTGAATACCTTTTATCACATCATAGGAAAGTGGTGTGGGATGTTACTATCTTCAATATCACCATAAATGTTCCTTGGAGAGAGGCAATATCCGATCCACATAACTTGGTTTTTGAAGCAGGCTCTCTTCTTTTTAGGACTAAATGTGATATGGGATCTCAGCCATCAGATAATGAGGAACAATTTTATACTCTGAAAAAGTTCTTATCTTCAGTTTCCAGCTGTAATATTTCTCCGTGCGTCCAAATTCAAGATCTGTATGATCACTATGAGGTCAAGTTAAATGATTTTGAGTTGAAGGTAACGATGCCTTCTCATTCTTCTCCAATTTCTATCTTGGAGAAACTTAGTCCTTCTGTCTCCTTTGCATTTTGCTTGATCCAAGATGAGTCAATATTGAAACAGTTGGAGGCTTGTGTCATTGTATCATCACTTCATGCACATTTTTCTCCATCGATATATGCTGCAATACTGGGATTGATAGAATATCTAGGTGCTCTGCAATTGAATTTTGATTCTCTACCCTTGGGAACTATTGATTCCCTTGATGCCACATCAAATGGATTAGGGAATCCTGTTTTCGGTTTCTCTACCAATATCAAACTGGAGACAGTGAAGATTGAAGTCGAACTGGAAAATGAAGAAGAAAATAGCTCGTCATTCATGCTTAAATTCCAACAATTGGACATGGGTTATTCGCTTTCAAAAATTGAGGAATGCTGGATCTTAATGAACGCATTGAGTATCACCACTTCTAAATTGGCTGATAAAAGTGATAGTCGGATTTTGTATTCATCTGGAAATCAATCATCTATGAATGCTTTACATCCACATGAGATTGGGATTGGCAATAGAAATGATCATTTTGCCAACACCGTTGGAAATAATGAAGCATGCTTTACTTTACAATATGAATCTCATCCGAAGGAGATTGTTCCTCAAAAATGTAGAATATGCTTGAATAACGGTGATCTCCACTGCTACCCATATGTTATCCGGCTTCTGGTTGCATTTTTTGATAAACTTTCTACTTATGGTGCATCTAATCCTGGTAAGAACACTTTGAGCTCATCTGTGGATGCTAGGTATCCAAAAAGTGTTCCTGGTTTTGGGTTTCAAAGGTTTGGTTTCTCCAACTTTGTAGAAACTGGGTCCTCTGAGTATGCAAGCATACCTTTAGATCATTTTCCTTTTGTTATGCTATCCAATGCTGGTTCCCTTGGTAACCTTGAAAGTTCTTTGCTTTATGCCAGTCCCGAGTGGAGAAAGTATTTCAGTATAAGGGACAGCAGAATCAGCAGCCCACTATCCAGCATAAAGGAGGTATCTAAAAAGTTCAATGCCCCAGCATTGAAGCACTCATCTGTGGTTGAAGCTTCTGCTGCGTGTGGGAGTTCTGCCACTACTAGTAGTCCGCTTGTAATTGATGTCAATCTCTGTGGAATCAGAGTGCATTTTCATGATTCAAAATGCATTGTTGGGACGATTACCCTGCCTAGGTCCAACTCTTCAGTATTAATTTCTGAAAACAACTTTGATATATTGTGTTCTACTGAGGGGTTAGTTCTCAGTTCATCTTGGTCGTCACAGAATTTACGCGAGTTTCTGTGGGGCCCCTCGGTCTCGAATTTATCTCCTATTTTAAATGTACGTGTGAGGAAAGAATGTGGGCCATTGAGTTCGCATGTTGAACTATGCTTTGGCATACAGCATGTATATTGCATCTTACCTCCTGAATATCTGGCCATAATAATTGGTTACTTTTCATTGTCTGATTGGAGTTCAGATTCTAATGACCAGCTTGTCACCATGGGGCATGAAGATACTGAAAGTGAAAGTGAATGTCCCTTTATCTACAAGATTGAGATACTGGACTCTGTTTTAGTTGTGCCCGTGGAAAGCAACGAGGGTCAGTTTCTAAAGAGTGAACTTCAGCAGTTCTACTGTACATTTATTCAAAGCAGTTCAAATAATGTATTGAAGGACATTCCCCATGAATGTTGGGTCCCGACTGATAAACTTGCTCAAAGAAATCATTGTTTAAATTTATTTGGACGAGACTTGTTTCTATCATTCCTGTCTTTCAAGGACAATCAATACAATTCCTTTGTAGATGTTCCGTTAATTGCTTCCCTAGGTGCTGACGTTTGGGTGAAAATACCTTGTGAAAGTGAATCGTCATGTGAAAGTTCTCCCTCAAACATTTGTGTCATGATCAGAGTTGGAAACTGTCAGCTTAAGCCTGAGGATGATCACTTTTTTTATGGATTTGAGGGGCTAAATGATATCATAAATCACTTTTCTGTAGTTTCTGATGTATCTGAATGTTTCAAGTCTGATGTTCTACAATTTCTTCAGTCAAAAAGGTGCTTGGCACAGAAAAATGCAGTTCCACCTGTTGTTTCAAGCATTAATTATACTGAAGTTAGATGCTATATCAATTCATTGTTGATACAGTTGAATCCCTGCCAAAGAGTCTCAGAAGATCCTATTGCTACTGCTGAAATGAAATTCATGTGCTCTGCATCATTGAGAAATGACACTCTCTTAAGTGTAGCTCTAAGATTTTCTTCCCTAGAAATATGTTCATTACCTAATTCTTTTGTATTAGCAAGATGCAAGTCCACAAGCTCAACCTCGTCAGTTCTTGAATTTTCTCTTACCAAAGAAAAAGATGGTGTAAATGAACTTCACGTTTCCTTGCCTTGTGTTGAAGTGTGGTTACATTTGTCTTACTGGAATGAGGTTGTTGACTTTTTCAAATCTTATGCTGGACAATCATCCACAAGTCTGCCGGACAACTTAGAGCAGGACACTGATGCCCTCATTGTGAGCTCAGAGAATATTTTCATTACATTTTACTTACCTGTTTGGACCGATGACCGAGCTTTTGGAGAATATCAGGGAGAGGAATGTCATGGAGATGGCTTTACAAATGGGTTATCTGACATAGTTGAAGCAAAAGCCTTTAGGTCCATTGCAGTTACTTTGTGCAGTAGAAGTAGTGAACTTTTTGTTGATGGAACAAATGTGAAAGTGAAATCCGACATAGAAAAACTGGAGGGCATGGTATTGGTAAGCCAGGATGGAAGTGTTCAATCTTCACCCTTTTTCCAGATATCTCAGGTGCTTTTGGTAGCTGACATAAATAACCTTATGGAGCTTATGCATGTTGCAGTAGATGTTCAATTTGATCATTTAGATGTATGGATTTCGCACAGCATTCTCTACTTCTGGCATGGTGTACAATTCAGTGTTGCTGAAGGAGGGCCTTCTCAATTTTCTTTTGGTAGAATTGATGTTAAAGTCCAGCTTAGGAAGTGGAGTTGTAGTGGACCCCTGTTTCAGATTCTCTTGGGGAACGTCCTCTTGCATATTACTGTGACTGAAAATAACCTTGAAGGTTTAGTTTCGGGTGACCTTCAAGTGAACTACAATAACATTCACAAGGTGTTCTGGGAGCCTTTTATTGAACCTTGGCAGTTTGACGTCAATGTGATTAGAAAACAAGAGATGAGTCTCAGCAGCTCCAATTTGACAGACATCCATCTGAAATCAGCTGCACACCTTAATGTGAACTTCACTGAATCCCTTATAGAGTGTGTTTTCAGGACAGTTGAGATGATCAAGGATGCTTGGGTTCTAGTGAGTCCAAATGATATTCCTGAAAGCCAAAAGTTATTAAATTCTCCGTTTGCTAAGCACACATATGCAGGAAAATATGCTCCTTATGTACTTCAAAACTTGACATCGCTGCCTCTAGCATATCGTGTTTATCAAGGCCCAATTAATTCTGATGAGTTGGATGTCTCAGAAACGAATAGAAAATATGTGCAACCAGGTTCTTCTATTCCAATATATATCGATGATACTCCTGAGAAACAACTTATTCATGTTAAGCCAGCACACTTCTCTGAGAGACTTTTTGACCAGAAGGCAAATGGGGTTCGCCATCAGTATATTACCATTCAACTTGATGGAACATCAGTGCCTTCTGAACCGATTTCAATGGATCTTGTAGGACTTGCCTACTTTGAGGTTGATTTTTCTATGTCATACAGTGACAATATGGAAAACCATGGAACAAATGCCAATGCTGGTTTTGTTGTTCCTGTTGTCTTTGATGTTTCAGTGCAGCGGTACAGCAAATTAATCCGATTATACTCAACGGTTATACTTTCGAATTCAACTTCCATGCCATTGGAGCTGCGATTTGATATTCCATTTGGTGTGTCCCCAAAGATCTTAGATCCAATATATCCTGGTCAAGAGTTACCACTGCCTCTACACTTGGCCGAAGCTGGTAGGATTAGATGGCGTCCAATTGGCGATTCTCATCTCTGGAGTGAAGTTTATAACCTCTCAAACCTGCTTTTTCAGGAGGGCAAAATTGGATTTCTCAAGTCTTTTGCTTGCTATCCAGCCCATCCCAATAGTGATCCATTTCGCTGTTGTATCTCAGTTAGAAACGTCAGTTTACCTTCACCTGTAAGGTCAAGAAAGAGTTCTTTAAAGCAAACAGTTGCAAGTGGTGGTCAAAAATTGCACAAGGACGAGGCAAAAAAGCAGTTTATTCACCAAGTAGTCCTCAGTATCCCTTTAGTAGTAAATAACTATCTTCCCGATGCAGTGACATTGACGATAGAAAGCGGTGGGATTACCCGGACTGCATTTCTTTCAGAGGTGGAAACTTCTTTTTATAATGTTGATCCTTCTCATCAGCTGAGATTGGAGATCCATATGCATGGCTTTAAAACAGCTATTTTGGATTTTCCGCGTACTGAAATATTCTGTCCAATGTATGTCACAGTGGAAAAGGTGATGGATGCATTTTCTGGAGCCAGGGAACTCTTTATCTCTGTTCCATTTCTGTTATATAATTGCACTGGCTTTCCACTCTTCATTTCTGAATCTGCCAGTGAAATGAAAGGAGTAAGCTGCATTGTGCCTTCTTGTTATGATATGGCTGATCAAGAAGTACTTCAGGGAAAAAAGGATGGTCTTGGTCTGGTATCTTCTAATCATAATCCAAATGCTAGAGATTCATATACAATGGGAAGTTCTTCCTCAAGAGTTCACATTGTCTCAATTAGAGACAATGCTACAACTCACAAAGAAATAAGCTTTAGCAAGCCTCTTTACTCTGAAGACAAATATCATGAGCTTTTAAGCAAACATAATTTAGACAGGGAAAACTCACTTTCCAACAGTTCACAGAATAGATCGAGTTCAAGCAGTCAGTTGACCTCAAAAGATTTAAACTCTAGTGGTTATGAGCGTGGAAGAGTAAGGGCATGCATGTTCTCTCCTAAACCGATTTCCTCTGCTGGTGAAGTAATGGTTAGAGTGAGTAGGTGTATGCCTGAATATGTAACGGAAAAGATGCCAAATTCTCTATGGTCAAGTTCATTTCCCCTTATTCCACCTAGTGGTTCAACTACTGTCCTTGTTCCTCAACCATCGTCAAATGCGGCTTTTATGATGTCCATTACGTCCAGTGCAGTTGCCGCACCATTTGCTGGGAGGACAAGTGCAATTACCTTCCAACCTAGATACATCATCAGCAATGCATGCGGTAAGAACTTATGTTATAAGCAGAAAGGAACCGAATTTTCTTTTCAATTGGGTACAGGTGAACATTCTCATCTTCACTGGATGGATACAACCAGGGAGTTACTCGTTTCAATTCGTTATAATGAGCCTGGATGGCAATGGTCAGGTGGCTTCTTGCCAGACCATCTCGGTGACACTCAAGTGAAAATGCGGAATTATCTCTCTGGTTCCTTAAATATGATACGGGTTGAAGTGCAAAATGCTGACGTCTCCGTGGGAGATGAAAAGATTGTTGGAAACTTCTATGGAAATTCTGGGACAAACTTGATTCTTGTGTCAGATGATGAGACTGGGTATATGCCCTACAGGGTTGATAATTTTACTAACGAGAGGCTAAGGATCTACCAACAAAGATGTGAAACCTTTGAGACTATTGTTCAGTCTTACACTTCTTGCCCTTATGCCTGGGATGAACCATGCTATCCACATCGTCTCACTGTGGAGGTACCTGGTAAGCGTGTTTTAGGGTCATACGCTCTTGATGATGTAAAAGAATACAGTCCGGTGCAATTACCATCATCTGCTGAGAAACCTGAGAGAACATTGCATATATCCATCCATGTTGAGGGAGCAACAAAGGTCCTCCATGTTATTGATTCAAGTTACCATGTCATGAATGACAACAGAAGTATTAGTCTACCTCACTTAAAAGACAAAGGGAAGCATGAACAGAAACAGGACAAGTTTATTGGTTTCATGGAAAGAATTTCAGTTTTTATTCAACAGATTGGCATCTCTTTGATCAATATTCACCCTCAGGAGTTGCTTTTTATATGTGCAAAGAGCATTACAGTTGATCTGGTACAGAGTTTGGATCAACAAAAACTTTCCTTCCAAATCGCATCATTGCAAGTCGATAATCAGCTTCGATCTTCCCCATATCCTGTTATGTTGTCTTTTGATCGTGAGTACAAAAACAATCCAGCTGGCCATGTGATTAGGGAGGATGATGTTAAACCAAGTGAAAGGCTTTTGCAAAGGACTTCTCGCAATTTTGAACCTGTATTCTGCCTAGCTGTATCTAAGTGGAGGAAGAAAGATGTCTCACTGGTTTCGTTTGAATACATAAGCTTAAGAGTTGCAGATGTTTGTCTTGAGCTTGAACAAGAATTGATATTAAGCCTATTTGGCTTCATAAGAAATGTATCTTCAAGGTTCCAGAGTAGAGTCTTGCCATTATCAGATCCGTTCCTGCACCATCCTTCTAATGATGCTGGCTCAATGGATGCGTATGCAACTGATAACCAACTTCACTTAATGAGTGTTCCTCTGCTTAATGAAAACCACAAGCAAAGACTCTCGCTACCTTCAATAGTTCCAATTGGAGCCCCTTGGCAGCAAATTTACCTTTTAGCTAGAAGACAGAAAAAGATATATGTAGAAGTGTTTGAATTTTCCCCCATCAAGTTGACCCTAAGCTTTTCCAGCACTCCATGGATGCTTAGAAATGGGATTCTTGCAGCAGGAGAATCTGTTATTCATAGAGGTCTGATGGCTCTTGCTGATGTGGAGGGTGCACGAATTCATCTGAAGCAGTTGACAATTGCACATCAAATTGCTAGCTTGGAGTCTCTACAAGAGATCCTTATGAGGCATTATACTCGGCAACTTCTTCATGAGATGTATAAGTCTGTAGACTCTACTGTAAGAGTGGAGTATATTTCAAGTTTGTGTTATCGAAAGTTTCTTTTACAAGATGTTCAGTTGTCAGTGGTTTTTGGTTCAGCTGGTGTAATTGGCAATCCCATGGGATTTGCAAGGAGTTTAGGGCTTGGCATTAGAGACTTCTTGTCAGTGCCTGCCAGAAGCATTTTTCAGAGCCCTACTGGATTAATTACTGGCATGGCACAAGGCACGACTAGTCTGCTAAGTAATACTGTCTATGCTATAAGTGATGCTGCCACCCAATTCAGCAAAGCTGCACACAAGGGAATTGTGGCATTTACATTTGATGACCAGGCTGTTTCAGGGGTGCAACAGCAACAGACTGGTATAGCATCTCACTCTAAAGGTGTTATCAATGAAGTATTTGAGGGACTCACAGGTCTTCTTCAATCACCAATCAATGGAGCTGAGAAACATGGTCTTCCTGGTGTGCTCTCAGGCATAGCTTTAGGTATTACAGGACTTGTGGCCAAACCAGCTGCTAGTATTCTTGAAGTTACAGGAAAAACTGCACAGAGCATTAGAAACCGAAGTAGGATCTATCAGACAGGACAACAGCGCTTTAGAGTCCGTCTTCCAAGGCCTCTAAGCCGAGAATATCCCTTAAGACCTTACTGTTGGGAAGAAGCTGTTGGAGCATCAGTACTTGTTGAGGCAGATGATAGTTTGACGCTCAAGGATGAAAATTTTGTTATGTGCAAGAAACTTAAAGAAGCTGGTAAATTTGTCATCATCACAGAGAGACTGGTTTTGATTGTAAGCTGCTCGAGTTTGGTGGACTTGGGTAAGCCTGAATTTTGTGGTGTTCCTTCTGATCTCAAATGGGTGATTGAATCAGAAATTCATTTGGAGAGTGCGATGCATGCTGACTGCGATCAAGGAGTAGTTCATATAGTCGGCAGCAGCTCTAATACGCCTTTGCGTCAAAACCAGTTAGCCAAAAGAAGCAGTGGAACAAGGGCGGTGCGTTGGAATAATCCTACTGTTCCCCTCATTCAGACTAACTTGGAACTAGAACACAAAGAAGATGCGGAGAACTTGTTACAGGTTTTATTGTCTACAATTGAACTGGGAAAAGACCAAGGTTGGGGTTGTAGGAATATTCTGCACCGAAGTAATATCAATTATCAAATAGTTATTTGCAGTCTTTGGGTCTCTCAGACCTCAAATAAGTCCCTTCTCTTTCAAGTTAGGGTTGGTGTCATGGATCCAGACGAGTGGTTTGAGTTGGATAGTTGGTTTTGGGTTAATAGGACTCGGTCGTCTACTGCCTTATGGCGGTGCGTCTTATTATCAGGCTGTGCTGACGTTTCCGGGAGATCCTGGGACAACCCACTCAATAGTTATCTATTGTGGTTTGATCCTGCTCCAGTCATTCCTATTTACTTTAGTCCTCTTAGCTCGATTAGCTACCTAGTTCAGGCGTCGTCTTTGGATCTTTTGACGAGTCAGTCAGTGTCCTCCCCTAGAGTGAGTATGCATACTTTTGCTGCTTTACTCAACTGTAATAGGGTGCTGTGA

Protein Analysis

3134

Amino Acids

349.85

Weight (kDa)

5.75

Isoelectric Point (pI)

47.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VPS13_M PF25033 1327 - 1411 6.6e-08 VPS13-like family middle region
VPS13_VAB PF25036 1578 - 1787 4.3e-07 Vacuolar-sorting associated protein 13, adaptor binding domain
VPS13_VAB PF25036 1952 - 2213 1.3e-23 Vacuolar-sorting associated protein 13, adaptor binding domain
VPS13_C PF25037 2818 - 2887 2.3e-09 Intermembrane lipid transfer protein VPS13, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 4962, 5307, 6198, 6300
AasI GACNNNNNNGTC 4 cut(s) 2408, 8262, 9145, 9334
AatII GACGTC 2 cut(s) 4098, 6429
AbsI CCTCGAGG 1 cut(s) 428
Acc16I TGCGCA 1 cut(s) 157
Acc36I ACCTGC 1 cut(s) 4983
Acc65I GGTACC 1 cut(s) 6664
AccB1I GGYRCC 1 cut(s) 6664
AccB7I CCANNNNNTGG 4 cut(s) 1288, 6035, 6125, 8285
AccI GTMKAC 5 cut(s) 592, 6856, 7854, 8942, 9149
AccII CGCG 2 cut(s) 2205, 5383
AcoI YGGCCR 5 cut(s) 211, 2349, 4899, 7147, 8352
AcuI CTGAAG 9 cut(s) 801, 2100, 2522, 2945, 3048, 3888, 5573, 5772, 7769
AcyI GRCGYC 4 cut(s) 4095, 4924, 6426, 9308
AdeI CACNNNGTG 2 cut(s) 4057, 6035
AfeI AGCGCT 1 cut(s) 8444
AflII CTTAAG 4 cut(s) 2843, 3154, 7291, 8488
AflIII ACRYGT 1 cut(s) 2257
AhdI GACNNNNNGTC 1 cut(s) 8008
AhlI ACTAGT 2 cut(s) 2012, 8078
AjuI GAANNNNNNNTTGG 8 cut(s) 2289, 2321, 4921, 4953, 6435, 6467, 8499, 8531
AleI CACNNNNGTG 2 cut(s) 293, 6359
Alw21I GWGCWC 6 cut(s) 1105, 1676, 3128, 3443, 7738, 8319
Alw44I GTGCAC 1 cut(s) 7734
AlwNI CAGNNNCTG 1 cut(s) 8018
Ama87I CYCGRG 3 cut(s) 428, 1862, 8650
Aor51HI AGCGCT 1 cut(s) 8444
ApaI GGGCCC 1 cut(s) 2222
ApaLI GTGCAC 1 cut(s) 7734
ArsI GACNNNNNNTTYG 4 cut(s) 3479, 3511, 9089, 9121
AseI ATTAAT 5 cut(s) 2123, 3018, 4395, 4757, 8051
Asp700I GAANNNNTTC 5 cut(s) 806, 3452, 5110, 5586, 5668
Asp718I GGTACC 1 cut(s) 6664
AspA2I CCTAGG 2 cut(s) 2102, 2740
AspLEI GCGC 2 cut(s) 158, 8445
AsuC2I CCSGG 2 cut(s) 5269, 9199
AsuII TTCGAA 1 cut(s) 4787
AsuNHI GCTAGC 1 cut(s) 7778
AvaI CYCGRG 3 cut(s) 428, 1862, 8650
AvaII GGWCC 8 cut(s) 553, 1758, 2106, 2611, 3480, 3579, 3941, 6799
AvrII CCTAGG 2 cut(s) 2102, 2740
AxyI CCTNAGG 2 cut(s) 2850, 6975
BaeGI GKGCMC 3 cut(s) 2222, 2499, 7738
BalI TGGCCA 4 cut(s) 213, 2351, 7149, 8354
BamHI GGATCC 1 cut(s) 9091
BanI GGYRCC 1 cut(s) 6664
BanII GRGCYC 5 cut(s) 1676, 2222, 3443, 7549, 8042
BarI GAAGNNNNNNTAC 8 cut(s) 1023, 1055, 1342, 1374, 3279, 3311, 3312, 3344
BbsI GAAGAC 5 cut(s) 5760, 7585, 8258, 8297, 8450
Bbv12I GWGCWC 6 cut(s) 1105, 1676, 3128, 3443, 7738, 8319
BcgI CGANNNNNNTGC 8 cut(s) 374, 408, 2080, 2114, 7802, 7836, 8065, 8099
BciVI GTATCC 3 cut(s) 1704, 5210, 6259
BclI TGATCA 8 cut(s) 868, 1465, 2820, 2857, 3799, 4230, 5575, 6960
BcnI CCSGG 2 cut(s) 5269, 9199
BcuI ACTAGT 2 cut(s) 2012, 8078
BfmI CTRYAG 5 cut(s) 276, 397, 2910, 6523, 7851
BfoI RGCGCY 1 cut(s) 8446
BfrI CTTAAG 4 cut(s) 2843, 3154, 7291, 8488
BfuAI ACCTGC 1 cut(s) 4983
BfuI GTATCC 3 cut(s) 1704, 5210, 6259
BglI GCCNNNNNGGC 2 cut(s) 6313, 7347
BglII AGATCT 2 cut(s) 859, 4848
BlnI CCTAGG 2 cut(s) 2102, 2740
BlpI GCTNAGC 1 cut(s) 4305
BmcAI AGTACT 2 cut(s) 5586, 8529
Bme18I GGWCC 8 cut(s) 553, 1758, 2106, 2611, 3480, 3579, 3941, 6799
BmeRI GACNNNNNGTC 1 cut(s) 8008
BmeT110I CYCGRG 3 cut(s) 428, 1862, 8650
BmrI ACTGGG 4 cut(s) 1088, 1764, 6519, 8963
BmtI GCTAGC 1 cut(s) 7782
BmuI ACTGGG 4 cut(s) 1088, 1764, 6519, 8963
BoxI GACNNNNGTC 2 cut(s) 30, 598
BpiI GAAGAC 5 cut(s) 5760, 7585, 8258, 8297, 8450
BplI GAGNNNNNCTC 2 cut(s) 7471, 7503
BpmI CTGGAG 6 cut(s) 33, 1232, 3686, 4969, 5463, 9237
Bpu10I CCTNAGC 3 cut(s) 3920, 6554, 7634
Bpu1102I GCTNAGC 1 cut(s) 4305
Bpu14I TTCGAA 1 cut(s) 4787
BpuEI CTTGAG 5 cut(s) 4991, 5659, 6342, 7334, 8543
BpuMI CCSGG 2 cut(s) 5269, 9199
Bsa29I ATCGAT 2 cut(s) 1061, 4470
BsaAI YACGTR 1 cut(s) 2258
BsaBI GATNNNNATC 3 cut(s) 2037, 4941, 6950
BsaHI GRCGYC 4 cut(s) 4095, 4924, 6426, 9308
BsaI GGTCTC 2 cut(s) 2233, 9043
BsaWI WCCGGW 1 cut(s) 6721
Bse21I CCTNAGG 2 cut(s) 2850, 6975
Bse3DI GCAATG 5 cut(s) 3582, 6178, 6323, 6761, 7064
Bse8I GATNNNNATC 3 cut(s) 2037, 4941, 6950
BseCI ATCGAT 2 cut(s) 1061, 4470
BseJI GATNNNNATC 3 cut(s) 2037, 4941, 6950
BseMI GCAATG 5 cut(s) 3582, 6178, 6323, 6761, 7064
BseSI GKGCMC 3 cut(s) 2222, 2499, 7738
BseYI CCCAGC 2 cut(s) 1951, 6125
BsgI GTGCAG 8 cut(s) 3619, 4152, 4760, 6126, 7397, 8124, 8379, 8975
Bsh1236I CGCG 2 cut(s) 2205, 5383
Bsh1285I CGRYCG 1 cut(s) 9146
BshNI GGYRCC 1 cut(s) 6664
BshVI ATCGAT 2 cut(s) 1061, 4470
BsiEI CGRYCG 1 cut(s) 9146
BsiHKAI GWGCWC 6 cut(s) 1105, 1676, 3128, 3443, 7738, 8319
BsiHKCI CYCGRG 3 cut(s) 428, 1862, 8650
BsiSI CCGG 5 cut(s) 1603, 3401, 5269, 6722, 9198
BsmBI CGTCTC 2 cut(s) 6433, 6656
BsmI GAATGC 3 cut(s) 1328, 1429, 3828
Bso31I GGTCTC 2 cut(s) 2233, 9043
BsoBI CYCGRG 3 cut(s) 428, 1862, 8650
Bsp119I TTCGAA 1 cut(s) 4787
Bsp120I GGGCCC 1 cut(s) 2218
Bsp1407I TGTACA 2 cut(s) 2552, 3850
Bsp1720I GCTNAGC 1 cut(s) 4305
Bsp19I CCATGG 4 cut(s) 2415, 4684, 7652, 7965
BspDI ATCGAT 2 cut(s) 1061, 4470
BspFNI CGCG 2 cut(s) 2205, 5383
BspHI TCATGA 5 cut(s) 2065, 2817, 5764, 6831, 7834
BspMAI CTGCAG 1 cut(s) 280
BspMI ACCTGC 1 cut(s) 4983
BspOI GCTAGC 1 cut(s) 7782
BspT104I TTCGAA 1 cut(s) 4787
BspT107I GGYRCC 1 cut(s) 6664
BspTI CTTAAG 4 cut(s) 2843, 3154, 7291, 8488
BspTNI GGTCTC 2 cut(s) 2233, 9043
BsrDI GCAATG 5 cut(s) 3582, 6178, 6323, 6761, 7064
BsrGI TGTACA 2 cut(s) 2552, 3850
BssNI GRCGYC 4 cut(s) 4095, 4924, 6426, 9308
Bst6I CTCTTC 4 cut(s) 738, 2119, 5510, 5884
BstACI GRCGYC 4 cut(s) 4095, 4924, 6426, 9308
BstAFI CTTAAG 4 cut(s) 2843, 3154, 7291, 8488
BstAPI GCANNNNNTGC 2 cut(s) 6122, 6177
BstAUI TGTACA 2 cut(s) 2552, 3850
BstBAI YACGTR 1 cut(s) 2258
BstBI TTCGAA 1 cut(s) 4787
BstDSI CCRYGG 6 cut(s) 2415, 2499, 4684, 6432, 7652, 7965
BstEII GGTNACC 2 cut(s) 1829, 4022
BstENI CCTNNNNNAGG 1 cut(s) 9302
BstFNI CGCG 2 cut(s) 2205, 5383
BstH2I RGCGCY 1 cut(s) 8446
BstHHI GCGC 2 cut(s) 158, 8445
BstMCI CGRYCG 1 cut(s) 9146
BstNSI RCATGY 8 cut(s) 1503, 2294, 2321, 3779, 5904, 5908, 6180, 8750
BstPAI GACNNNNGTC 2 cut(s) 30, 598
BstPI GGTNACC 2 cut(s) 1829, 4022
BstSFI CTRYAG 5 cut(s) 276, 397, 2910, 6523, 7851
BstSLI GKGCMC 3 cut(s) 2222, 2499, 7738
BstUI CGCG 2 cut(s) 2205, 5383
BstV2I GAAGAC 5 cut(s) 5760, 7585, 8258, 8297, 8450
BstXI CCANNNNNNTGG 3 cut(s) 4807, 5351, 9102
Bsu15I ATCGAT 2 cut(s) 1061, 4470
Bsu36I CCTNAGG 2 cut(s) 2850, 6975
BsuI GTATCC 3 cut(s) 1704, 5210, 6259
BsuTUI ATCGAT 2 cut(s) 1061, 4470
BtgI CCRYGG 6 cut(s) 2415, 2499, 4684, 6432, 7652, 7965
BtgZI GCGATG 2 cut(s) 4341, 8756
BtsI GCAGTG 5 cut(s) 191, 1582, 4883, 5241, 8839
BveI ACCTGC 1 cut(s) 4983
CaiI CAGNNNCTG 1 cut(s) 8018
CciI TCATGA 5 cut(s) 2065, 2817, 5764, 6831, 7834
CfoI GCGC 2 cut(s) 158, 8445
ClaI ATCGAT 2 cut(s) 1061, 4470
CseI GACGC 6 cut(s) 835, 4913, 8563, 8795, 9157, 9297
CsiI ACCWGGT 2 cut(s) 4444, 6667
CspCI CAANNNNNGTGG 4 cut(s) 693, 728, 2026, 2061
DraI TTTAAA 6 cut(s) 525, 2250, 2649, 5118, 5359, 5865
DraIII CACNNNGTG 2 cut(s) 4057, 6035
DrdI GACNNNNNNGTC 4 cut(s) 2408, 8262, 9145, 9334
DriI GACNNNNNGTC 1 cut(s) 8008
DseDI GACNNNNNNGTC 4 cut(s) 2408, 8262, 9145, 9334
EaeI YGGCCR 5 cut(s) 211, 2349, 4899, 7147, 8352
Eam1104I CTCTTC 4 cut(s) 738, 2119, 5510, 5884
Eam1105I GACNNNNNGTC 1 cut(s) 8008
EarI CTCTTC 4 cut(s) 738, 2119, 5510, 5884
Ecl136II GAGCTC 2 cut(s) 1674, 3441
Eco147I AGGCCT 2 cut(s) 355, 8467
Eco24I GRGCYC 5 cut(s) 1676, 2222, 3443, 7549, 8042
Eco31I GGTCTC 2 cut(s) 2233, 9043
Eco32I GATATC 2 cut(s) 2893, 3726
Eco47I GGWCC 8 cut(s) 553, 1758, 2106, 2611, 3480, 3579, 3941, 6799
Eco47III AGCGCT 1 cut(s) 8444
Eco53kI GAGCTC 2 cut(s) 1674, 3441
Eco57I CTGAAG 9 cut(s) 801, 2100, 2522, 2945, 3048, 3888, 5573, 5772, 7769
Eco81I CCTNAGG 2 cut(s) 2850, 6975
Eco88I CYCGRG 3 cut(s) 428, 1862, 8650
Eco91I GGTNACC 2 cut(s) 1829, 4022
EcoICRI GAGCTC 2 cut(s) 1674, 3441
EcoNI CCTNNNNNAGG 1 cut(s) 9302
EcoO109I RGGNCCY 7 cut(s) 553, 1758, 2218, 2219, 2611, 3875, 6799
EcoO65I GGTNACC 2 cut(s) 1829, 4022
EcoRI GAATTC 2 cut(s) 4789, 7740
EcoRV GATATC 2 cut(s) 2893, 3726
EcoT22I ATGCAT 8 cut(s) 2081, 3777, 5352, 5437, 5906, 6178, 8748, 9366
EcoT38I GRGCYC 5 cut(s) 1676, 2222, 3443, 7549, 8042
Esp3I CGTCTC 2 cut(s) 6433, 6656
FauNDI CATATG 3 cut(s) 1594, 4315, 5346
FbaI TGATCA 8 cut(s) 868, 1465, 2820, 2857, 3799, 4230, 5575, 6960
FblI GTMKAC 5 cut(s) 592, 6856, 7854, 8942, 9149
FriOI GRGCYC 5 cut(s) 1676, 2222, 3443, 7549, 8042
FspAI RTGCGCAY 1 cut(s) 157
FspI TGCGCA 1 cut(s) 157
GlaI GCGC 2 cut(s) 157, 8444
GsaI CCCAGC 2 cut(s) 1955, 6129
GsuI CTGGAG 6 cut(s) 33, 1232, 3686, 4969, 5463, 9237
HaeII RGCGCY 1 cut(s) 8446
HapII CCGG 5 cut(s) 1603, 3401, 5269, 6722, 9198
HgaI GACGC 6 cut(s) 835, 4913, 8563, 8795, 9157, 9297
HhaI GCGC 2 cut(s) 158, 8445
Hin1I GRCGYC 4 cut(s) 4095, 4924, 6426, 9308
Hin6I GCGC 2 cut(s) 156, 8443
HinP1I GCGC 2 cut(s) 156, 8443
HincII GTYRAC 5 cut(s) 593, 3358, 5850, 7629, 7758
HindII GTYRAC 5 cut(s) 593, 3358, 5850, 7629, 7758
HindIII AAGCTT 4 cut(s) 1980, 5728, 7288, 7636
HpaII CCGG 5 cut(s) 1603, 3401, 5269, 6722, 9198
Hpy99I CGWCG 1 cut(s) 9313
HpyCH4IV ACGT 9 cut(s) 2257, 2751, 3300, 3969, 4095, 5076, 6098, 6426, 9192
HpySE526I ACGT 9 cut(s) 2257, 2751, 3300, 3969, 4095, 5076, 6098, 6426, 9192
Hsp92I GRCGYC 4 cut(s) 4095, 4924, 6426, 9308
HspAI GCGC 2 cut(s) 156, 8443
KflI GGGWCCC 1 cut(s) 2611
KpnI GGTACC 1 cut(s) 6668
Ksp22I TGATCA 8 cut(s) 868, 1465, 2820, 2857, 3799, 4230, 5575, 6960
MabI ACCWGGT 2 cut(s) 4444, 6667
MaeII ACGT 9 cut(s) 2257, 2751, 3300, 3969, 4095, 5076, 6098, 6426, 9192
MfeI CAATTG 7 cut(s) 1109, 1286, 4929, 6227, 7539, 7761, 8946
MlsI TGGCCA 4 cut(s) 213, 2351, 7149, 8354
MluNI TGGCCA 4 cut(s) 213, 2351, 7149, 8354
Mox20I TGGCCA 4 cut(s) 213, 2351, 7149, 8354
Mph1103I ATGCAT 8 cut(s) 2081, 3777, 5352, 5437, 5906, 6178, 8748, 9366
MroXI GAANNNNTTC 5 cut(s) 806, 3452, 5110, 5586, 5668
MscI TGGCCA 4 cut(s) 213, 2351, 7149, 8354
Msp20I TGGCCA 4 cut(s) 213, 2351, 7149, 8354
MspA1I CMGCKG 7 cut(s) 828, 4166, 4744, 5329, 7145, 7946, 8363
MspCI CTTAAG 4 cut(s) 2843, 3154, 7291, 8488
MspI CCGG 5 cut(s) 1603, 3401, 5269, 6722, 9198
MunI CAATTG 7 cut(s) 1109, 1286, 4929, 6227, 7539, 7761, 8946
Mva1269I GAATGC 3 cut(s) 1328, 1429, 3828
MvnI CGCG 2 cut(s) 2205, 5383
NciI CCSGG 2 cut(s) 5269, 9199
NcoI CCATGG 4 cut(s) 2415, 4684, 7652, 7965
NdeI CATATG 3 cut(s) 1594, 4315, 5346
NheI GCTAGC 1 cut(s) 7778
NmeAIII GCCGAG 2 cut(s) 7801, 8501
NsbI TGCGCA 1 cut(s) 157
NsiI ATGCAT 8 cut(s) 2081, 3777, 5352, 5437, 5906, 6178, 8748, 9366
NspI RCATGY 8 cut(s) 1503, 2294, 2321, 3779, 5904, 5908, 6180, 8750
NspV TTCGAA 1 cut(s) 4787
OliI CACNNNNGTG 2 cut(s) 293, 6359
PaeI GCATGC 4 cut(s) 1503, 5904, 6180, 8750
PaeR7I CTCGAG 2 cut(s) 428, 8650
PagI TCATGA 5 cut(s) 2065, 2817, 5764, 6831, 7834
PceI AGGCCT 2 cut(s) 355, 8467
PctI GAATGC 3 cut(s) 1328, 1429, 3828
PdmI GAANNNNTTC 5 cut(s) 806, 3452, 5110, 5586, 5668
PflFI GACNNNGTC 1 cut(s) 9142
PflMI CCANNNNNTGG 4 cut(s) 1288, 6035, 6125, 8285
PfoI TCCNGGA 1 cut(s) 9197
Ppu21I YACGTR 1 cut(s) 2258
PpuMI RGGWCCY 4 cut(s) 553, 1758, 2611, 6799
PshAI GACNNNNGTC 2 cut(s) 30, 598
PshBI ATTAAT 5 cut(s) 2123, 3018, 4395, 4757, 8051
PsiI TTATAA 4 cut(s) 4962, 5307, 6198, 6300
Psp124BI GAGCTC 2 cut(s) 1676, 3443
Psp5II RGGWCCY 4 cut(s) 553, 1758, 2611, 6799
PspEI GGTNACC 2 cut(s) 1829, 4022
PspFI CCCAGC 2 cut(s) 1951, 6125
PspOMI GGGCCC 1 cut(s) 2218
PspPPI RGGWCCY 4 cut(s) 553, 1758, 2611, 6799
PspXI VCTCGAGB 2 cut(s) 428, 8650
PstI CTGCAG 1 cut(s) 280
PstNI CAGNNNCTG 1 cut(s) 8018
PsyI GACNNNGTC 1 cut(s) 9142
PvuII CAGCTG 6 cut(s) 828, 4166, 5329, 7145, 7946, 8363
SacI GAGCTC 2 cut(s) 1676, 3443
SalI GTCGAC 1 cut(s) 591
ScaI AGTACT 2 cut(s) 5586, 8529
SexAI ACCWGGT 2 cut(s) 4444, 6667
SfcI CTRYAG 5 cut(s) 276, 397, 2910, 6523, 7851
Sfr274I CTCGAG 2 cut(s) 428, 8650
SfuI TTCGAA 1 cut(s) 4787
SinI GGWCC 8 cut(s) 553, 1758, 2106, 2611, 3480, 3579, 3941, 6799
SlaI CTCGAG 2 cut(s) 428, 8650
SpeI ACTAGT 2 cut(s) 2012, 8078
SphI GCATGC 4 cut(s) 1503, 5904, 6180, 8750
SseBI AGGCCT 2 cut(s) 355, 8467
SspI AATATT 6 cut(s) 835, 1002, 3451, 5394, 6967, 8986
SstI GAGCTC 2 cut(s) 1676, 3443
StuI AGGCCT 2 cut(s) 355, 8467
TaiI ACGT 9 cut(s) 2260, 2754, 3303, 3972, 4098, 5079, 6101, 6429, 9195
TaqII GACCGA 4 cut(s) 2215, 3497, 3504, 9132
TatI WGTACW 6 cut(s) 2552, 3850, 4339, 5584, 7128, 8527
TauI GCSGC 2 cut(s) 6080, 6116
TspGWI ACGGA 8 cut(s) 266, 831, 2715, 4287, 5996, 6421, 7395, 8444
Tth111I GACNNNGTC 1 cut(s) 9142
Van91I CCANNNNNTGG 4 cut(s) 1288, 6035, 6125, 8285
Vha464I CTTAAG 4 cut(s) 2843, 3154, 7291, 8488
VneI GTGCAC 1 cut(s) 7734
VpaK11BI GGWCC 8 cut(s) 553, 1758, 2106, 2611, 3480, 3579, 3941, 6799
VspI ATTAAT 5 cut(s) 2123, 3018, 4395, 4757, 8051
XagI CCTNNNNNAGG 1 cut(s) 9302
XceI RCATGY 8 cut(s) 1503, 2294, 2321, 3779, 5904, 5908, 6180, 8750
XcmI CCANNNNNNNNNTGG 4 cut(s) 1207, 1363, 4544, 6000
XhoI CTCGAG 2 cut(s) 428, 8650
XmaJI CCTAGG 2 cut(s) 2102, 2740
XmiI GTMKAC 5 cut(s) 592, 6856, 7854, 8942, 9149
XmnI GAANNNNTTC 5 cut(s) 806, 3452, 5110, 5586, 5668
ZraI GACGTC 2 cut(s) 4096, 6427
ZrmI AGTACT 2 cut(s) 5586, 8529
Zsp2I ATGCAT 8 cut(s) 2081, 3777, 5352, 5437, 5906, 6178, 8748, 9366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.