Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001657

Physical Location & Seq

Genomic Coordinates Forward (+)

56759406 .. 56762520

Gene Structure 3115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG362600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1647 bp

ATGATCATTACCGGCTTCATCTCAGACGGGTTCGCTTCTAGTCGCCTCATTGCCTTCTGTGCGCTTTCGGAGTGCCGAAATCTTCACTATGCCACCAAGATCCTGCACAATGTGCACGACCAAAATGCCTTCTCTTGGAATGTGGTCATCCGAGGGTTTTCGGAGACCGAAAATCCGAGAGGAGCAGTTGTAATGTATAGGGAAATGTTGAGAAATGGTGGGTCGAGACCGGATAATTATACTTACCCATTACTGCTAGGAATCTGCTCTAATTTGTCATTCAATTTGATGGGGCGTGTGGTTCTTGGCCATGTGTTCCAAGTGGGATTGGATTCTGATAGATTTGTTCGCAATGCGGCGATTCATATGTTTGTTTCATGCAGAGAATTAGGGGATGCACGTAAGGTGTTCGACGAAAGTTCTGTGAGAGACTTGGTGTCTTGGAATTCTCTGATTCATGGTTATGTGCGAAGTGGGTTGGCACGTGAGGCATTGCGGGTTTATGAGGAAATGGAGGTGGAGAGAGTTGAGCCGGATCAAGTGACAATGATTGGGGTGGTTTCTTCGTGTGCCCAACTTGAGGACTTGAGTCTCGGGAGGAAATTTCATGGGTTGATACGAGAGATTGGGCTAGGCTTGACTCCTCCTCTTGCCAATGCACTTATGGACATGTACGCCAAGTGTGGGAATCTTGAGGCAGCTCGAGCAGTATTTGACAACATGAAACAGAAAACCATCGTCTCATGGACTACAATGATAGTGGGATATGCCAAACATGGGTTTTTGGAGATTGCTCACCGCCTTTTGTACGAGGTGCCAGAGAGTAATGTTGTGCCGTGGAATGCAATGATCGGCCCAATTAGTCCTGATGAGTTTGATGCCTCAGAAACGAATAGAAAAGTTGTACAACCAGGTTCTTCCATTCCAATATATATCAATGATACTCTTGAGGAGCAACTTATTCATGCTAAGCCAGCGAACTTCTCTAATAGACTTTTTGACCAGAAGGCAAATGGGGTTTGTAATCAGTATATTACTATTCAACTTGATGGAACATCAGTGCCTTCTGATCCGATTTCAATGGATCTTGTAGGACTTGCCTACTCTGAGGGTTATCTTTCTATGTCATACAACGACCATATGGAAAACCATAGAACAAAGGCCAATGCTGGTTTTGTTGTTCCTGTTGTGTTTGATGTTTCAGTGCTGCAGTACAGCAAGTTAATCCGATTATACTCAAAGGTTATACTTTCAAATGCGACTTCAGTGCCATTGGAGCTGCGATTTGATATTCCATTTGGTGTGTCCCCAAAGATCTGGGACCCCATATATCCAGGTCAAGAGTTACCGATGCCTCTAACTTGGCAGAAGCCGGTAGGATTAGATGGTGTCCAATTGGAGATTCTCATCTCTGGAGTGAAGTTTATAACCTCGGAAGCTTATAACCTCTCAAACCTGCTTTCTCAAGAGAGTAAAATTAAATTTCTCAAGTCTTTTGGTTGCTATTCAGCCCATCCCAATAGTGATCCATTTCACTGTTGTATTTCAGTTAGAAACATCAGTTTACCTTCATCTGTTAGGTCAAGGGAGATCTTTTCTTCACATCTTAAGAGTTCTTTAAAGCAAGCAGTTGCAAGTAGTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1 DYW_deaminase PPR PPR_2

Protein Analysis

548

Amino Acids

61.04

Weight (kDa)

6.32

Isoelectric Point (pI)

37.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	42 - 88	3.1e-07	PPR repeat family
PPR_2	PF13041	144 - 191	6.4e-11	PPR repeat family
PPR	PF01535	146 - 174	1.9e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24740 AT5G24740 AT5G24740 AT5G24740 AT5G24740 AT5G24740
fragaria_vesca	FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300
malus_domestica	MD09G1170300.v1.1 MD17G1156800.v1.1
prunus_persica	Prupe.3G028500_v2.0.a1 Prupe.3G028500_v2.0.a1 Prupe.3G028500_v2.0.a1
pyrus_communis	pycom09g08790 pycom17g15020
rosa_chinensis	RchiOBHm_Chr2g0148301 RchiOBHm_Chr2g0148311 RchiOBHm_Chr5g0051461
rosa_laevigata	RLG00000020335
rosa_multiflora	Rmu_sc0004032.1_g000013 Rmu_sc0022189.1_g000006
rosa_roxburghii	Rroxscaffold_1G00027070 Rroxscaffold_2G00098910 Rroxscaffold_2G00098920
rosa_rugosa	Rorug02G0405600 Rorug05G0279200
rosa_samantha	Rh2AG464200 Rh2BG477200 Rh2CG450900 Rh2DG486000 Rh5AG350300 Rh5AG350400 Rh5BG362600 Rh5CG387200 Rh5DG377000
rosa_wichuraiana	Rw2G037840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1427, 1443
Acc36I	ACCTGC	1 cut(s)	1464
AccB1I	GGYRCC	1 cut(s)	814
AciI	CCGC	3 cut(s)	356, 496, 799
AclWI	GGATC	5 cut(s)	94, 543, 1064, 1092, 1520
AcoI	YGGCCR	1 cut(s)	307
AcsI	RAATTY	3 cut(s)	445, 602, 1481
AcuI	CTGAAG	1 cut(s)	1248
AcvI	CACGTG	1 cut(s)	485
AdeI	CACNNNGTG	1 cut(s)	112
AfaI	GTAC	4 cut(s)	674, 809, 906, 1214
AfiI	CCNNNNNNNGG	4 cut(s)	135, 580, 684, 777
AflII	CTTAAG	1 cut(s)	1607
AflIII	ACRYGT	1 cut(s)	669
AgsI	TTSAA	4 cut(s)	283, 1043, 1080, 1254
AhdI	GACNNNNNGTC	1 cut(s)	436
AjnI	CCWGG	2 cut(s)	910, 1333
AjuI	GAANNNNNNNTTGG	2 cut(s)	1386, 1418
AluBI	AGCT	3 cut(s)	701, 1279, 1439
AluI	AGCT	3 cut(s)	701, 1279, 1439
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	5 cut(s)	158, 220, 423, 596, 745
Alw44I	GTGCAC	1 cut(s)	113
AlwI	GGATC	5 cut(s)	94, 543, 1064, 1092, 1520
Ama87I	CYCGRG	2 cut(s)	593, 702
AoxI	GGCC	3 cut(s)	307, 853, 1161
ApaLI	GTGCAC	1 cut(s)	113
ApeKI	GCWGC	3 cut(s)	698, 1207, 1279
ApoI	RAATTY	3 cut(s)	445, 602, 1481
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	2 cut(s)	854, 1321
AsuHPI	GGTGA	1 cut(s)	788
AvaI	CYCGRG	2 cut(s)	593, 702
AvaII	GGWCC	1 cut(s)	1321
BaeGI	GKGCMC	2 cut(s)	117, 574
BalI	TGGCCA	1 cut(s)	309
BanI	GGYRCC	1 cut(s)	814
BbrPI	CACGTG	1 cut(s)	485
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	3 cut(s)	710, 1194, 1266
BccI	CCATC	5 cut(s)	283, 743, 1043, 1379, 1521
BceAI	ACGGC	1 cut(s)	820
BcgI	CGANNNNNNTGC	4 cut(s)	107, 141, 1249, 1283
BciT130I	CCWGG	2 cut(s)	912, 1335
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	5 cut(s)	158, 220, 423, 596, 745
BfaI	CTAG	3 cut(s)	39, 257, 632
BfmI	CTRYAG	1 cut(s)	1208
BfrI	CTTAAG	1 cut(s)	1607
BfuAI	ACCTGC	1 cut(s)	1464
BglII	AGATCT	2 cut(s)	1314, 1590
BisI	GCNGC	4 cut(s)	357, 699, 1208, 1280
BlpI	GCTNAGC	1 cut(s)	969
BlsI	GCNGC	4 cut(s)	358, 700, 1209, 1281
Bme1390I	CCNGG	2 cut(s)	912, 1335
Bme18I	GGWCC	1 cut(s)	1321
BmeRI	GACNNNNNGTC	1 cut(s)	436
BmeT110I	CYCGRG	2 cut(s)	593, 702
BmgT120I	GGNCC	2 cut(s)	854, 1321
BmiI	GGNNCC	3 cut(s)	816, 1322, 1323
BmrFI	CCNGG	2 cut(s)	912, 1335
BmsI	GCATC	3 cut(s)	385, 868, 1341
BoxI	GACNNNNGTC	1 cut(s)	588
BpmI	CTGGAG	1 cut(s)	1434
Bpu1102I	GCTNAGC	1 cut(s)	969
BpuEI	CTTGAG	6 cut(s)	599, 607, 713, 968, 1449, 1472
BsaAI	YACGTR	2 cut(s)	401, 485
BsaBI	GATNNNNATC	1 cut(s)	1406
BsaI	GGTCTC	2 cut(s)	158, 220
BsaJI	CCNNGG	3 cut(s)	151, 836, 1431
BsaWI	WCCGGW	1 cut(s)	229
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
Bsc4I	CCNNNNNNNGG	4 cut(s)	135, 580, 684, 777
Bse118I	RCCGGY	2 cut(s)	11, 1372
Bse3DI	GCAATG	4 cut(s)	48, 358, 491, 852
Bse8I	GATNNNNATC	1 cut(s)	1406
BseBI	CCWGG	2 cut(s)	912, 1335
BseDI	CCNNGG	3 cut(s)	151, 836, 1431
BseGI	GGATG	3 cut(s)	147, 400, 1513
BseJI	GATNNNNATC	1 cut(s)	1406
BseLI	CCNNNNNNNGG	4 cut(s)	135, 580, 684, 777
BseMI	GCAATG	4 cut(s)	48, 358, 491, 852
BseMII	CTCAG	3 cut(s)	36, 897, 1098
BseRI	GAGGAG	4 cut(s)	195, 633, 636, 965
BseSI	GKGCMC	2 cut(s)	117, 574
BseXI	GCAGC	3 cut(s)	710, 1194, 1266
BsgI	GTGCAG	1 cut(s)	89
BshFI	GGCC	3 cut(s)	309, 855, 1163
BshNI	GGYRCC	1 cut(s)	814
BsiHKAI	GWGCWC	1 cut(s)	117
BsiHKCI	CYCGRG	2 cut(s)	593, 702
BsiSI	CCGG	4 cut(s)	12, 230, 533, 1373
BslFI	GGGAC	2 cut(s)	1291, 1334
BslI	CCNNNNNNNGG	4 cut(s)	135, 580, 684, 777
BsmAI	GTCTC	5 cut(s)	158, 220, 423, 596, 745
BsmBI	CGTCTC	1 cut(s)	745
BsmFI	GGGAC	2 cut(s)	1291, 1334
BsmI	GAATGC	1 cut(s)	847
BsnI	GGCC	3 cut(s)	309, 855, 1163
Bso31I	GGTCTC	2 cut(s)	158, 220
BsoBI	CYCGRG	2 cut(s)	593, 702
Bsp1286I	GDGCHC	2 cut(s)	117, 574
Bsp1407I	TGTACA	1 cut(s)	904
Bsp143I	GATC	9 cut(s)	3, 99, 535, 849, 1069, 1084, 1314, 1525, 1590
Bsp1720I	GCTNAGC	1 cut(s)	969
BspACI	CCGC	3 cut(s)	356, 496, 799
BspANI	GGCC	3 cut(s)	309, 855, 1163
BspCNI	CTCAG	3 cut(s)	35, 896, 1099
BspLI	GGNNCC	3 cut(s)	816, 1322, 1323
BspMAI	CTGCAG	1 cut(s)	1212
BspMI	ACCTGC	1 cut(s)	1464
BspPI	GGATC	5 cut(s)	94, 543, 1064, 1092, 1520
BspT107I	GGYRCC	1 cut(s)	814
BspTI	CTTAAG	1 cut(s)	1607
BspTNI	GGTCTC	2 cut(s)	158, 220
BsrDI	GCAATG	4 cut(s)	48, 358, 491, 852
BsrFI	RCCGGY	2 cut(s)	11, 1372
BsrGI	TGTACA	1 cut(s)	904
BssAI	RCCGGY	2 cut(s)	11, 1372
BssECI	CCNNGG	3 cut(s)	151, 836, 1431
BssMI	GATC	9 cut(s)	3, 99, 535, 849, 1069, 1084, 1314, 1525, 1590
Bst2UI	CCWGG	2 cut(s)	912, 1335
Bst4CI	ACNGT	1 cut(s)	1538
BstAFI	CTTAAG	1 cut(s)	1607
BstAPI	GCANNNNNTGC	1 cut(s)	112
BstAUI	TGTACA	1 cut(s)	904
BstBAI	YACGTR	2 cut(s)	401, 485
BstC8I	GCNNGC	2 cut(s)	975, 1626
BstDEI	CTNAG	4 cut(s)	22, 883, 969, 1107
BstDSI	CCRYGG	1 cut(s)	836
BstF5I	GGATG	3 cut(s)	147, 400, 1513
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	9 cut(s)	6, 102, 538, 852, 1072, 1087, 1317, 1528, 1593
BstMAI	GTCTC	5 cut(s)	158, 220, 423, 596, 745
BstMBI	GATC	9 cut(s)	3, 99, 535, 849, 1069, 1084, 1314, 1525, 1590
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 112, 488, 704, 974, 1276
BstNI	CCWGG	2 cut(s)	912, 1335
BstNSI	RCATGY	1 cut(s)	673
BstPAI	GACNNNNGTC	1 cut(s)	588
BstSCI	CCNGG	2 cut(s)	910, 1333
BstSFI	CTRYAG	1 cut(s)	1208
BstSLI	GKGCMC	2 cut(s)	117, 574
BstV1I	GCAGC	3 cut(s)	710, 1194, 1266
BstX2I	RGATCY	4 cut(s)	99, 1084, 1314, 1590
BstXI	CCANNNNNNTGG	1 cut(s)	1317
BstYI	RGATCY	4 cut(s)	99, 1084, 1314, 1590
BsuRI	GGCC	3 cut(s)	309, 855, 1163
BtgI	CCRYGG	1 cut(s)	836
BtsCI	GGATG	3 cut(s)	147, 400, 1513
BtsIMutI	CAGTG	4 cut(s)	1065, 1209, 1272, 1534
BveI	ACCTGC	1 cut(s)	1464
Cac8I	GCNNGC	2 cut(s)	975, 1626
CfoI	GCGC	1 cut(s)	64
Cfr10I	RCCGGY	2 cut(s)	11, 1372
Cfr13I	GGNCC	2 cut(s)	854, 1321
CsiI	ACCWGGT	1 cut(s)	910
Csp6I	GTAC	4 cut(s)	673, 808, 905, 1213
CspCI	CAANNNNNGTGG	2 cut(s)	741, 776
CviAII	CATG	9 cut(s)	311, 378, 458, 608, 670, 721, 744, 776, 965
CviQI	GTAC	4 cut(s)	673, 808, 905, 1213
DdeI	CTNAG	4 cut(s)	22, 883, 969, 1107
DpnI	GATC	9 cut(s)	5, 101, 537, 851, 1071, 1086, 1316, 1527, 1592
DpnII	GATC	9 cut(s)	3, 99, 535, 849, 1069, 1084, 1314, 1525, 1590
DraI	TTTAAA	1 cut(s)	1620
DraIII	CACNNNGTG	1 cut(s)	112
DriI	GACNNNNNGTC	1 cut(s)	436
EaeI	YGGCCR	1 cut(s)	307
Eam1105I	GACNNNNNGTC	1 cut(s)	436
Eco31I	GGTCTC	2 cut(s)	158, 220
Eco47I	GGWCC	1 cut(s)	1321
Eco57I	CTGAAG	1 cut(s)	1248
Eco72I	CACGTG	1 cut(s)	485
Eco88I	CYCGRG	2 cut(s)	593, 702
EcoO109I	RGGNCCY	1 cut(s)	1321
EcoRI	GAATTC	1 cut(s)	445
EcoRII	CCWGG	2 cut(s)	910, 1333
Esp3I	CGTCTC	1 cut(s)	745
FaeI	CATG	9 cut(s)	314, 381, 461, 611, 673, 724, 747, 779, 968
FaqI	GGGAC	2 cut(s)	1291, 1334
FatI	CATG	9 cut(s)	310, 377, 457, 607, 669, 720, 743, 775, 964
FauI	CCCGC	1 cut(s)	489
FauNDI	CATATG	2 cut(s)	366, 1140
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	4 cut(s)	357, 699, 1208, 1280
FokI	GGATG	3 cut(s)	134, 407, 1500
Fsp4HI	GCNGC	4 cut(s)	357, 699, 1208, 1280
FspBI	CTAG	3 cut(s)	39, 257, 632
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	4 cut(s)	357, 699, 1208, 1280
GsuI	CTGGAG	1 cut(s)	1434
HaeIII	GGCC	3 cut(s)	309, 855, 1163
HapII	CCGG	4 cut(s)	12, 230, 533, 1373
HhaI	GCGC	1 cut(s)	64
Hin1II	CATG	9 cut(s)	314, 381, 461, 611, 673, 724, 747, 779, 968
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HindIII	AAGCTT	1 cut(s)	1437
HinfI	GANTC	8 cut(s)	261, 332, 361, 454, 589, 640, 688, 1402
HpaII	CCGG	4 cut(s)	12, 230, 533, 1373
HphI	GGTGA	1 cut(s)	788
Hpy166II	GTNNAC	2 cut(s)	115, 1565
Hpy188III	TCNNGA	8 cut(s)	225, 595, 692, 866, 947, 1340, 1413, 1466
Hpy8I	GTNNAC	2 cut(s)	115, 1565
Hpy99I	CGWCG	1 cut(s)	416
HpyAV	CCTTC	5 cut(s)	64, 139, 1000, 1074, 1578
HpyCH4III	ACNGT	1 cut(s)	1538
HpyCH4IV	ACGT	2 cut(s)	400, 484
HpyCH4V	TGCA	8 cut(s)	106, 115, 381, 398, 659, 845, 1210, 1634
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 112, 488, 704, 974, 1276
HpyF3I	CTNAG	4 cut(s)	22, 883, 969, 1107
HpySE526I	ACGT	2 cut(s)	400, 484
Hsp92II	CATG	9 cut(s)	314, 381, 461, 611, 673, 724, 747, 779, 968
HspAI	GCGC	1 cut(s)	62
KflI	GGGWCCC	1 cut(s)	1321
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	9 cut(s)	3, 99, 535, 849, 1069, 1084, 1314, 1525, 1590
LmnI	GCTCC	3 cut(s)	182, 952, 1276
Lsp1109I	GCAGC	3 cut(s)	710, 1194, 1266
LweI	GCATC	3 cut(s)	385, 868, 1341
MabI	ACCWGGT	1 cut(s)	910
MaeI	CTAG	3 cut(s)	39, 257, 632
MaeII	ACGT	2 cut(s)	400, 484
MaeIII	GTNAC	2 cut(s)	541, 1344
MalI	GATC	9 cut(s)	5, 101, 537, 851, 1071, 1086, 1316, 1527, 1592
MboI	GATC	9 cut(s)	3, 99, 535, 849, 1069, 1084, 1314, 1525, 1590
MboII	GAAGA	4 cut(s)	74, 555, 909, 1590
MfeI	CAATTG	1 cut(s)	1394
MflI	RGATCY	4 cut(s)	99, 1084, 1314, 1590
MhlI	GDGCHC	2 cut(s)	117, 574
MlsI	TGGCCA	1 cut(s)	309
MluNI	TGGCCA	1 cut(s)	309
MlyI	GAGTC	2 cut(s)	598, 634
Mox20I	TGGCCA	1 cut(s)	309
MscI	TGGCCA	1 cut(s)	309
MseI	TTAA	5 cut(s)	1223, 1479, 1608, 1619, 1645
MslI	CAYNNNNRTG	1 cut(s)	462
Msp20I	TGGCCA	1 cut(s)	309
MspCI	CTTAAG	1 cut(s)	1607
MspI	CCGG	4 cut(s)	12, 230, 533, 1373
MspR9I	CCNGG	2 cut(s)	912, 1335
MunI	CAATTG	1 cut(s)	1394
Mva1269I	GAATGC	1 cut(s)	847
MvaI	CCWGG	2 cut(s)	912, 1335
MwoI	GCNNNNNNNGC	6 cut(s)	59, 112, 488, 704, 974, 1276
NdeI	CATATG	2 cut(s)	366, 1140
NdeII	GATC	9 cut(s)	3, 99, 535, 849, 1069, 1084, 1314, 1525, 1590
NlaIII	CATG	9 cut(s)	314, 381, 461, 611, 673, 724, 747, 779, 968
NlaIV	GGNNCC	3 cut(s)	816, 1322, 1323
NmuCI	GTSAC	1 cut(s)	541
NspI	RCATGY	1 cut(s)	673
PaeR7I	CTCGAG	1 cut(s)	702
PciI	ACATGT	1 cut(s)	669
PctI	GAATGC	1 cut(s)	847
PfeI	GAWTC	6 cut(s)	261, 332, 361, 454, 688, 1402
PkrI	GCNGC	4 cut(s)	358, 700, 1209, 1281
PleI	GAGTC	2 cut(s)	597, 634
PmaCI	CACGTG	1 cut(s)	485
PmlI	CACGTG	1 cut(s)	485
PpsI	GAGTC	2 cut(s)	597, 634
Ppu21I	YACGTR	2 cut(s)	401, 485
PpuMI	RGGWCCY	1 cut(s)	1321
PscI	ACATGT	1 cut(s)	669
PshAI	GACNNNNGTC	1 cut(s)	588
PsiI	TTATAA	2 cut(s)	1427, 1443
Psp5II	RGGWCCY	1 cut(s)	1321
Psp6I	CCWGG	2 cut(s)	910, 1333
PspCI	CACGTG	1 cut(s)	485
PspGI	CCWGG	2 cut(s)	910, 1333
PspN4I	GGNNCC	3 cut(s)	816, 1322, 1323
PspPI	GGNCC	2 cut(s)	854, 1321
PspPPI	RGGWCCY	1 cut(s)	1321
PspXI	VCTCGAGB	1 cut(s)	702
PstI	CTGCAG	1 cut(s)	1212
PsuI	RGATCY	4 cut(s)	99, 1084, 1314, 1590
RsaI	GTAC	4 cut(s)	674, 809, 906, 1214
RsaNI	GTAC	4 cut(s)	673, 808, 905, 1213
RseI	CAYNNNNRTG	1 cut(s)	462
SaqAI	TTAA	5 cut(s)	1223, 1479, 1608, 1619, 1645
SatI	GCNGC	4 cut(s)	357, 699, 1208, 1280
Sau3AI	GATC	9 cut(s)	3, 99, 535, 849, 1069, 1084, 1314, 1525, 1590
Sau96I	GGNCC	2 cut(s)	854, 1321
SchI	GAGTC	2 cut(s)	598, 634
ScrFI	CCNGG	2 cut(s)	912, 1335
SduI	GDGCHC	2 cut(s)	117, 574
SexAI	ACCWGGT	1 cut(s)	910
SfaNI	GCATC	3 cut(s)	385, 868, 1341
SfcI	CTRYAG	1 cut(s)	1208
Sfr274I	CTCGAG	1 cut(s)	702
SinI	GGWCC	1 cut(s)	1321
SlaI	CTCGAG	1 cut(s)	702
SmiMI	CAYNNNNRTG	1 cut(s)	462
SmlI	CTYRAG	8 cut(s)	578, 586, 692, 702, 947, 1464, 1487, 1607
SmoI	CTYRAG	8 cut(s)	578, 586, 692, 702, 947, 1464, 1487, 1607
SsiI	CCGC	3 cut(s)	356, 496, 799
SspMI	CTAG	3 cut(s)	39, 257, 632
StyD4I	CCNGG	2 cut(s)	910, 1333
TaaI	ACNGT	1 cut(s)	1538
TaiI	ACGT	2 cut(s)	403, 487
TaqI	TCGA	3 cut(s)	224, 411, 703
TaqII	GACCGA	1 cut(s)	182
TatI	WGTACW	2 cut(s)	904, 1212
TauI	GCSGC	1 cut(s)	359
TfiI	GAWTC	6 cut(s)	261, 332, 361, 454, 688, 1402
Tru1I	TTAA	5 cut(s)	1223, 1479, 1608, 1619, 1645
Tru9I	TTAA	5 cut(s)	1223, 1479, 1608, 1619, 1645
TscAI	CASTG	4 cut(s)	1065, 1209, 1272, 1541
TseFI	GTSAC	1 cut(s)	541
TseI	GCWGC	3 cut(s)	698, 1207, 1279
Tsp45I	GTSAC	1 cut(s)	541
TspDTI	ATGAA	8 cut(s)	7, 353, 366, 446, 596, 737, 953, 1560
TspRI	CASTG	4 cut(s)	1065, 1209, 1272, 1541
Vha464I	CTTAAG	1 cut(s)	1607
VneI	GTGCAC	1 cut(s)	113
VpaK11BI	GGWCC	1 cut(s)	1321
XapI	RAATTY	3 cut(s)	445, 602, 1481
XceI	RCATGY	1 cut(s)	673
XcmI	CCANNNNNNNNNTGG	2 cut(s)	661, 1010
XhoI	CTCGAG	1 cut(s)	702
XspI	CTAG	3 cut(s)	39, 257, 632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.