Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004032.1

Orthogroup ID

OG0001657

Physical Location & Seq

Genomic Coordinates Reverse (-)

47982 .. 65776

Gene Structure 17795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004032.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5562 bp

atgttcgaaggactcgtcagccagattcttcacggctatctcggtcgctatgtcaaggattttcacaagcaccagctcaagatggagatttggaatgaggaagtgttcttggaaaacgtcgagcttagtctcgaagcctttgattatctccagttgcctttcgctctcaaacaaggtcggattggaaagataagcatcaaagttccatggaaaacgcttggtggggacccctttgtaattagtttggaaaatgtcttcctatgtgcatcccaacgagatgatgaagagtggagtttggatgaagttgaaaaacgagagtttgctggaaaaaaggccaaacttgctgcagcagaactggccaaattatcaaaatgtgtatgcgaaaaccaggctgggcttagatcaataattactgctaaggttcttgacagcatccaagtgtcaatcagagattttcatatcttgtaccatgacaagctcagtggctcggcatgtaatatttttggtttgaagatttccagcttgaggactatgaagcaaaatccttccgggtcacttgcaaagggaagagggggccaagttaacaaaactgtggagattatgggtttggagttttactgtggcacacttgatggggcggtggagttgatggctatgaacaatgatggggactccgtagtacggcaagatataagatatgacgggaaaagatataacaactccatactgtcaccatgtgatgtttccatgtcactctcggtcaacagatcaggagagcttgatagcaaaatcccgcagtactccatcaccgctgagataactgacttggtgatgtgcttagatgaggttcagttgcaacagattttgtttctgtgggattatttttgtacatgtgaattgagaaagaagtatgggcgttatcgtccctggagtagtccgttatcaaaaaaggcgaagggttggcaaatgttatggtggcattatgcgcaagaatctatcttatcagatgtacggaagagattaaagaaaacatcgtggagacacttcggacagagactaagctcttgtcggaagtatgttaacctatataagactaagctggattttcttcgccatgatcagccaattgatgaaagtactcgatgggaattggagcagatggagaaagaattagacatagatgatattttaagttacagatcggctgcagaatgtgagttgcaggagtttttggtgaactcttcaactggaaaatcccgtggatggctgaactggctatctcttggtatgcttggtgctggaggaacagatgacttgggtcaattttctggggctgtttttgtttctgatgcagttattaaggatatatatgaggcgacaaagttcaatcctcctattttatccaatggggatgctcgaacaactgataagattgatatatgcgcactccatttcagcatcaatcggatttctgcaacactgcgtaacatgaagtatggccaagaaattgcagagttgatgttgaatggggtgactacggagtgcaaatttagggaagaatctgcagccattgtcaccattgtgaactcagggcagatggtttatccttgtaacaagaaagtcattctgcatttgcgaaggcctaataatgagaagaacgaagtggaaaacgagaatccttcctgtagattgcaagtggatgtatcatcaaacctcgaggctgaattgtccattaaggggatgcttcaaccattagaagtcaccattgatgcagaatttttcttaaagttgatggattttcttggagctttaaaatcctttgaaagtcagcatggaagggtccttctgtcgctaaatgggatagaaaatgtcaatggtcgactgttgtcgaaagctgaataccttttatcacatcataggaaagtggtgtgggatgttactatcttcaatatcatcataaatgttccttggagagaggcaatatctgatccacataacttggtttttgaagcaggctctcttctttttaggactaaatgtgatatgggatctcagccatcagatgatgaggaacaattttatactctgaaaaagttcttaacttcagtttccagctgtaatatttctccatgcgtccaaattcaagatctgtacgatcactatgaggtcaagttaaatgattttgagttgaaggtaacgatgccttctcattcttctccaatttctatcttggagaaacttagtccttctgtctcctttgcattttgcttgatccaagatgagtcaatattgaaacagttggaggcttgtgtcattgtatcatcacttcatgcacatttttctccatcgatatatgctgcaatgctgggattgatagaatatctaggtgctctgcaagtgaattttgattctctacccttgggaactattgattcacttgatgccacatcaaatggattagggaatcctgttttcggtttctctaccaatatcaaactggagacagtgaagattgaagtcgaactggaaaatgaagaagaaaatagctcgtcattcatggttaaattccaacaattggacatgggttattcgctttcaaaaattgaggaatgctggatcttaatgaacgcattgagtatcaccacttctaaattggctgataaaagtgatagtcggattttgtattcatctggaaatcaatcatctatgaatgctttacatccacatgagattgggattggcaatagaaatgatcattttgccaacaccattggaaataatgaagcatgctttactttacaatatgaatctcatccgaaggagactgttcgtaaaaaatgtagaatatgcttgaataacggtgatctccactgctacccatatgttatccggcttctggttgcattttttgataaactttctacttatggtgcatctaatcctggtaagaacactttgagctcatctgtggatgctaggtatccaaaaagtgttcctggttttgggtctcaaaggtttggtttctccaactttgtagaaactgggtcctctgagtatgcaagcatacctttagatcattttccttttgttatgctatccaatgctggttcccttggtaaccttgaaagttctttgctttatgccagtcccgagtggagaaagtatttcagtataagggacagcagaatcagcagcccactatccagcataaaggaggtatctaaaaagttccatgccccagcattgaagcactcatctgtggttgaagcttctgctgcgtgtgggagttctgccactactagtagtccgcttgtaattgatgtcaatctctgtggaatcagagtgcattttcatgattcaaaatgcattgttgggacaattaccgtgcctaggtccaactcttcagtattaatttctgaaaacagctttgatatattgtgttctactgaggggttagttctcagttcatcttggtcgtcacagaatttacgcgagtttctgtggggcccctcggtcttgaatttatctcctattttaaatgtacgtgtgaggaaagaatgtgggccattgagttcgcatgttgaactatgctttggcatacagcatgtatattgcatcttacctcctgaatatctggccataataattggttacttttcatcgtctgattggagttcagattctaatgaccagcttgtcaccatggggcatgaagatactgaaagtgaaagtgaatgttcctttatctacaagattgagatactggactctgttttagttgtgcccgtggaaagcaacgagggtcagtttctaaagagcgaacttcagcagttctactgtacatttattcaaagcagttcaaataatgtattgaaggacattccccatgaatgttgggtcccgactgataaacttgctaaaagaaatcattgtttaaatttatttggacgagacttgtttctatcattcctgtctttcaaggacaatcaatacaattcctttgtagatgttccgttaattgcttccctaggtgctgacgtttgggtgaaaataccttgtgaaagtgaatcgtcatgtgaaagttctccctcaaacatttgtgtcatgatcagagttggaaactgtcagcttaagcctgaggatgatcactttttttatggatttgaggggctaaatgatatcataaatcaattttctgtagtttctgatgtatctgaatgtttcaagtctgatgttctacaatttcttcagtcaaaaaggtgcttagcacagaaaaatgcagttccacctgttgtttcaagcattaattatactgaagttagatgctatatcaattcattgttgatacagttgaatccctgccaaagagtctcggaagatcctattgctactgctgaaatgaaattcatctgctctgcatcattgagaaatgacactctcttaagtgtagctctaagtttttcttccctagaaatattttcattacccaattcttttgtattagcaagatgcaagtccacaagctcaacctcgtcagttcttgaattttctcttaccaaagaaaaagatggtgtaaatgaacttcacgtttccttgccttgtgttgaagtgtggctacatttgtcttactggaatgaggttgttgaccttttcaaatcttatgctggacaatcatccacaagtctgccggacaacttagagcaggacactgatgccctcattgtgagctcagagaatattttcattacattttacttacctgtttggaccgatgaccgagcttttggggaatatcagggagaggaatgtcatggagatggctctacaaatgggttatctgacatagttgaagcaaaagcctttaggtccattgcagttactttgtgcagtagaagtagtgaactttttgttgatggaacaaatgtgaaagtgaaatccgacgtagaaaaactggagggcatggtattggtaagccaggatggaagtgttcaatcttcaccctttttccagatatctcaggtgcttttggtagctgacataaataaccttatggagcttatgcatgttgaagtagatgttcaatttgatcaattagatgtatggatttcgcacagcattctctacttctggcatggtgtacaattcagtgttgctgaaggagggccttctcaattttcttttggtagaattgatgttaaagtccagcttaggaaggtttcttttctgctaagcgatggaaggtggagttgtagtggacccctgtttcagattctcttggggaacatcctcttgcatattactgtgactgaaaataacctcgaaggtgtagtttcgggtgaccttcaagtaaactacaataacattcacaaggtgttctgggagccttttattgaaccttggcagtttgaggtcaatctgattagaaaacaagagatgagtctcagcagctccaatttcacagatatccatctgaaatcagctgcacaccttaatgtgaacttcactgaatcccttatagaggtgcgaacttcactgaatcccttagcctgccatgtcctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0006810 GO:0006914 GO:0006996 GO:0007033 GO:0007034 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016043 GO:0016192 GO:0016236 GO:0022607 GO:0030587 GO:0031154 GO:0032502 GO:0044085 GO:0044237 GO:0044248 GO:0045324 GO:0046907 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051703 GO:0051704 GO:0061919 GO:0070925 GO:0071840 GO:0090702 GO:0099120 GO:1905037

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chorein_N SHR-BD VPS13 VPS13_C VPS13_mid_rpt

Protein Analysis

1853

Amino Acids

207.85

Weight (kDa)

5.27

Isoelectric Point (pI)

46.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24740 AT5G24740 AT5G24740 AT5G24740 AT5G24740 AT5G24740
fragaria_vesca	FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300 FvH4_6g36300
malus_domestica	MD09G1170300.v1.1 MD17G1156800.v1.1
prunus_persica	Prupe.3G028500_v2.0.a1 Prupe.3G028500_v2.0.a1 Prupe.3G028500_v2.0.a1
pyrus_communis	pycom09g08790 pycom17g15020
rosa_chinensis	RchiOBHm_Chr2g0148301 RchiOBHm_Chr2g0148311 RchiOBHm_Chr5g0051461
rosa_laevigata	RLG00000020335
rosa_multiflora	Rmu_sc0004032.1_g000013 Rmu_sc0022189.1_g000006
rosa_roxburghii	Rroxscaffold_1G00027070 Rroxscaffold_2G00098910 Rroxscaffold_2G00098920
rosa_rugosa	Rorug02G0405600 Rorug05G0279200
rosa_samantha	Rh2AG464200 Rh2BG477200 Rh2CG450900 Rh2DG486000 Rh5AG350300 Rh5AG350400 Rh5BG362600 Rh5CG387200 Rh5DG377000
rosa_wichuraiana	Rw2G037840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	3695
AbsI	CCTCGAGG	1 cut(s)	1715
Acc16I	TGCGCA	2 cut(s)	987, 1444
AccB7I	CCANNNNNTGG	1 cut(s)	2575
AccI	GTMKAC	1 cut(s)	1879
AccII	CGCG	1 cut(s)	3492
AciI	CCGC	4 cut(s)	638, 794, 810, 3308
AclWI	GGATC	5 cut(s)	1982, 2056, 2266, 2624, 4373
AcoI	YGGCCR	3 cut(s)	357, 1498, 3636
AcuI	CTGAAG	6 cut(s)	2088, 3387, 3809, 4232, 4335, 5175
AdeI	CACNNNGTG	2 cut(s)	737, 5371
AflII	CTTAAG	2 cut(s)	4130, 4441
AflIII	ACRYGT	2 cut(s)	890, 3544
AhlI	ACTAGT	1 cut(s)	3299
AjnI	CCWGG	5 cut(s)	387, 926, 2941, 2995, 4974
AjuI	GAANNNNNNNTTGG	2 cut(s)	3576, 3608
AleI	CACNNNNGTG	1 cut(s)	1580
Alw21I	GWGCWC	3 cut(s)	2392, 2963, 4730
AlwI	GGATC	5 cut(s)	1982, 2056, 2266, 2624, 4373
Ama87I	CYCGRG	2 cut(s)	1715, 3149
AoxI	GGCC	9 cut(s)	333, 357, 574, 1498, 1640, 3505, 3563, 3636, 5162
ApaI	GGGCCC	1 cut(s)	3509
ApeKI	GCWGC	9 cut(s)	344, 347, 1205, 1565, 2357, 3192, 3275, 5445, 5480
ArsI	GACNNNNNNTTYG	3 cut(s)	32, 4766, 4798
AseI	ATTAAT	2 cut(s)	3410, 4305
Asp700I	GAANNNNTTC	2 cut(s)	2093, 4739
AspA2I	CCTAGG	2 cut(s)	3389, 4027
AspLEI	GCGC	2 cut(s)	988, 1445
AsuC2I	CCSGG	1 cut(s)	550
AsuII	TTCGAA	1 cut(s)	6
AvaI	CYCGRG	2 cut(s)	1715, 3149
AvaII	GGWCC	8 cut(s)	226, 1840, 3045, 3393, 3898, 4767, 4866, 5255
AvrII	CCTAGG	2 cut(s)	3389, 4027
AxyI	CCTNAGG	1 cut(s)	4137
BaeGI	GKGCMC	2 cut(s)	3509, 3786
BalI	TGGCCA	3 cut(s)	359, 1500, 3638
BanII	GRGCYC	3 cut(s)	2963, 3509, 4730
BarI	GAAGNNNNNNTAC	8 cut(s)	2310, 2342, 2629, 2661, 4566, 4598, 4599, 4631
BbsI	GAAGAC	1 cut(s)	247
Bbv12I	GWGCWC	3 cut(s)	2392, 2963, 4730
BbvI	GCAGC	9 cut(s)	331, 359, 1192, 1577, 2344, 3204, 3262, 5457, 5467
BceAI	ACGGC	2 cut(s)	49, 698
BciT130I	CCWGG	5 cut(s)	389, 928, 2943, 2997, 4976
BciVI	GTATCC	1 cut(s)	2991
BclI	TGATCA	5 cut(s)	1117, 2752, 4107, 4144, 5086
BcnI	CCSGG	1 cut(s)	550
BcuI	ACTAGT	1 cut(s)	3299
BfaI	CTAG	6 cut(s)	2384, 2976, 3300, 3390, 4028, 4469
BfmI	CTRYAG	5 cut(s)	345, 1206, 1563, 1684, 4197
BfrI	CTTAAG	2 cut(s)	4130, 4441
BfuI	GTATCC	1 cut(s)	2991
BglII	AGATCT	1 cut(s)	2146
BisI	GCNGC	9 cut(s)	345, 348, 1206, 1566, 2358, 3193, 3276, 5446, 5481
BlnI	CCTAGG	2 cut(s)	3389, 4027
BlpI	GCTNAGC	2 cut(s)	4264, 5228
BlsI	GCNGC	9 cut(s)	346, 349, 1207, 1567, 2359, 3194, 3277, 5447, 5482
BmcAI	AGTACT	2 cut(s)	800, 1138
Bme1390I	CCNGG	6 cut(s)	389, 550, 928, 2943, 2997, 4976
Bme18I	GGWCC	8 cut(s)	226, 1840, 3045, 3393, 3898, 4767, 4866, 5255
BmeT110I	CYCGRG	2 cut(s)	1715, 3149
BmrFI	CCNGG	6 cut(s)	389, 550, 928, 2943, 2997, 4976
BmrI	ACTGGG	1 cut(s)	3051
BmuI	ACTGGG	1 cut(s)	3051
BoxI	GACNNNNGTC	2 cut(s)	1317, 1885
BpiI	GAAGAC	1 cut(s)	247
BpmI	CTGGAG	5 cut(s)	134, 949, 1320, 2519, 4973
Bpu10I	CCTNAGC	3 cut(s)	417, 5207, 5542
Bpu1102I	GCTNAGC	2 cut(s)	4264, 5228
Bpu14I	TTCGAA	1 cut(s)	6
BpuEI	CTTGAG	2 cut(s)	62, 544
BpuMI	CCSGG	1 cut(s)	550
Bsa29I	ATCGAT	1 cut(s)	2348
BsaAI	YACGTR	1 cut(s)	3545
BsaBI	GATNNNNATC	3 cut(s)	194, 3324, 5466
BsaI	GGTCTC	1 cut(s)	3012
BsaXI	ACNNNNNCTCC	2 cut(s)	5236, 5266
Bse21I	CCTNAGG	1 cut(s)	4137
Bse3DI	GCAATG	2 cut(s)	2367, 4869
Bse8I	GATNNNNATC	3 cut(s)	194, 3324, 5466
BseBI	CCWGG	5 cut(s)	389, 928, 2943, 2997, 4976
BseCI	ATCGAT	1 cut(s)	2348
BseJI	GATNNNNATC	3 cut(s)	194, 3324, 5466
BseMI	GCAATG	2 cut(s)	2367, 4869
BseSI	GKGCMC	2 cut(s)	3509, 3786
BseXI	GCAGC	9 cut(s)	331, 359, 1192, 1577, 2344, 3204, 3262, 5457, 5467
BseYI	CCCAGC	3 cut(s)	392, 2365, 3238
BsgI	GTGCAG	2 cut(s)	4906, 5466
Bsh1236I	CGCG	1 cut(s)	3492
Bsh1285I	CGRYCG	1 cut(s)	46
BshFI	GGCC	9 cut(s)	335, 359, 576, 1500, 1642, 3507, 3565, 3638, 5164
BshVI	ATCGAT	1 cut(s)	2348
BsiEI	CGRYCG	1 cut(s)	46
BsiHKAI	GWGCWC	3 cut(s)	2392, 2963, 4730
BsiHKCI	CYCGRG	2 cut(s)	1715, 3149
BsiSI	CCGG	3 cut(s)	549, 2890, 4688
BslFI	GGGAC	7 cut(s)	239, 683, 909, 3132, 3191, 3388, 3884
BsmFI	GGGAC	7 cut(s)	239, 683, 909, 3132, 3191, 3388, 3884
BsmI	GAATGC	3 cut(s)	2615, 2716, 5115
BsnI	GGCC	9 cut(s)	335, 359, 576, 1500, 1642, 3507, 3565, 3638, 5164
Bso31I	GGTCTC	1 cut(s)	3012
BsoBI	CYCGRG	2 cut(s)	1715, 3149
Bsp119I	TTCGAA	1 cut(s)	6
Bsp120I	GGGCCC	1 cut(s)	3505
Bsp1286I	GDGCHC	5 cut(s)	2392, 2963, 3509, 3786, 4730
Bsp1407I	TGTACA	3 cut(s)	887, 3839, 5137
Bsp1720I	GCTNAGC	2 cut(s)	4264, 5228
Bsp19I	CCATGG	2 cut(s)	206, 3702
BspACI	CCGC	4 cut(s)	638, 794, 810, 3308
BspANI	GGCC	9 cut(s)	335, 359, 576, 1500, 1642, 3507, 3565, 3638, 5164
BspDI	ATCGAT	1 cut(s)	2348
BspFNI	CGCG	1 cut(s)	3492
BspHI	TCATGA	2 cut(s)	3352, 4104
BspMAI	CTGCAG	3 cut(s)	349, 1210, 1567
BspPI	GGATC	5 cut(s)	1982, 2056, 2266, 2624, 4373
BspT104I	TTCGAA	1 cut(s)	6
BspTI	CTTAAG	2 cut(s)	4130, 4441
BspTNI	GGTCTC	1 cut(s)	3012
BsrDI	GCAATG	2 cut(s)	2367, 4869
BsrGI	TGTACA	3 cut(s)	887, 3839, 5137
BssT1I	CCWWGG	8 cut(s)	206, 1967, 2418, 3112, 3389, 3702, 4027, 5396
Bst2UI	CCWGG	5 cut(s)	389, 928, 2943, 2997, 4976
Bst6I	CTCTTC	6 cut(s)	279, 562, 1010, 1246, 2025, 3406
BstAFI	CTTAAG	2 cut(s)	4130, 4441
BstAUI	TGTACA	3 cut(s)	887, 3839, 5137
BstBAI	YACGTR	1 cut(s)	3545
BstBI	TTCGAA	1 cut(s)	6
BstC8I	GCNNGC	4 cut(s)	2014, 2788, 3061, 5548
BstDSI	CCRYGG	4 cut(s)	206, 1258, 3702, 3786
BstEII	GGTNACC	2 cut(s)	3116, 5336
BstENI	CCTNNNNNAGG	1 cut(s)	5516
BstFNI	CGCG	1 cut(s)	3492
BstHHI	GCGC	2 cut(s)	988, 1445
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	6 cut(s)	341, 356, 985, 1273, 3189, 3275
BstNI	CCWGG	5 cut(s)	389, 928, 2943, 2997, 4976
BstNSI	RCATGY	6 cut(s)	495, 894, 2790, 3581, 3608, 5066
BstPAI	GACNNNNGTC	2 cut(s)	1317, 1885
BstPI	GGTNACC	2 cut(s)	3116, 5336
BstSCI	CCNGG	6 cut(s)	387, 548, 926, 2941, 2995, 4974
BstSFI	CTRYAG	5 cut(s)	345, 1206, 1563, 1684, 4197
BstSLI	GKGCMC	2 cut(s)	3509, 3786
BstUI	CGCG	1 cut(s)	3492
BstV1I	GCAGC	9 cut(s)	331, 359, 1192, 1577, 2344, 3204, 3262, 5457, 5467
BstV2I	GAAGAC	1 cut(s)	247
BstX2I	RGATCY	4 cut(s)	2048, 2146, 2616, 4378
BstYI	RGATCY	4 cut(s)	2048, 2146, 2616, 4378
Bsu15I	ATCGAT	1 cut(s)	2348
Bsu36I	CCTNAGG	1 cut(s)	4137
BsuI	GTATCC	1 cut(s)	2991
BsuRI	GGCC	9 cut(s)	335, 359, 576, 1500, 1642, 3507, 3565, 3638, 5164
BsuTUI	ATCGAT	1 cut(s)	2348
BtgI	CCRYGG	4 cut(s)	206, 1258, 3702, 3786
BtgZI	GCGATG	1 cut(s)	5247
BtsI	GCAGTG	2 cut(s)	1478, 2869
BtsIMutI	CAGTG	8 cut(s)	487, 1478, 2511, 2869, 4707, 5152, 5502, 5531
Cac8I	GCNNGC	4 cut(s)	2014, 2788, 3061, 5548
CciI	TCATGA	2 cut(s)	3352, 4104
CfoI	GCGC	2 cut(s)	988, 1445
ClaI	ATCGAT	1 cut(s)	2348
CseI	GACGC	1 cut(s)	2122
CspCI	CAANNNNNGTGG	6 cut(s)	463, 498, 1980, 2015, 3313, 3348
DraI	TTTAAA	3 cut(s)	1812, 3537, 3936
DraIII	CACNNNGTG	2 cut(s)	737, 5371
DrdI	GACNNNNNNGTC	1 cut(s)	3695
DseDI	GACNNNNNNGTC	1 cut(s)	3695
EaeI	YGGCCR	3 cut(s)	357, 1498, 3636
Eam1104I	CTCTTC	6 cut(s)	279, 562, 1010, 1246, 2025, 3406
EarI	CTCTTC	6 cut(s)	279, 562, 1010, 1246, 2025, 3406
Ecl136II	GAGCTC	2 cut(s)	2961, 4728
Eco130I	CCWWGG	8 cut(s)	206, 1967, 2418, 3112, 3389, 3702, 4027, 5396
Eco147I	AGGCCT	1 cut(s)	1642
Eco24I	GRGCYC	3 cut(s)	2963, 3509, 4730
Eco31I	GGTCTC	1 cut(s)	3012
Eco32I	GATATC	3 cut(s)	4180, 5013, 5464
Eco47I	GGWCC	8 cut(s)	226, 1840, 3045, 3393, 3898, 4767, 4866, 5255
Eco53kI	GAGCTC	2 cut(s)	2961, 4728
Eco57I	CTGAAG	6 cut(s)	2088, 3387, 3809, 4232, 4335, 5175
Eco81I	CCTNAGG	1 cut(s)	4137
Eco88I	CYCGRG	2 cut(s)	1715, 3149
Eco91I	GGTNACC	2 cut(s)	3116, 5336
EcoICRI	GAGCTC	2 cut(s)	2961, 4728
EcoNI	CCTNNNNNAGG	1 cut(s)	5516
EcoO109I	RGGNCCY	7 cut(s)	226, 1840, 3045, 3505, 3506, 3898, 5162
EcoO65I	GGTNACC	2 cut(s)	3116, 5336
EcoRII	CCWGG	5 cut(s)	387, 926, 2941, 2995, 4974
EcoRV	GATATC	3 cut(s)	4180, 5013, 5464
EcoT14I	CCWWGG	8 cut(s)	206, 1967, 2418, 3112, 3389, 3702, 4027, 5396
EcoT22I	ATGCAT	2 cut(s)	3368, 5064
EcoT38I	GRGCYC	3 cut(s)	2963, 3509, 4730
ErhI	CCWWGG	8 cut(s)	206, 1967, 2418, 3112, 3389, 3702, 4027, 5396
FalI	AAGNNNNNCTT	6 cut(s)	3052, 3084, 4447, 4479, 5190, 5222
FaqI	GGGAC	7 cut(s)	239, 683, 909, 3132, 3191, 3388, 3884
FauI	CCCGC	1 cut(s)	801
FauNDI	CATATG	1 cut(s)	2881
FbaI	TGATCA	5 cut(s)	1117, 2752, 4107, 4144, 5086
FblI	GTMKAC	1 cut(s)	1879
Fnu4HI	GCNGC	9 cut(s)	345, 348, 1206, 1566, 2358, 3193, 3276, 5446, 5481
FriOI	GRGCYC	3 cut(s)	2963, 3509, 4730
Fsp4HI	GCNGC	9 cut(s)	345, 348, 1206, 1566, 2358, 3193, 3276, 5446, 5481
FspAI	RTGCGCAY	1 cut(s)	1444
FspBI	CTAG	6 cut(s)	2384, 2976, 3300, 3390, 4028, 4469
FspI	TGCGCA	2 cut(s)	987, 1444
GlaI	GCGC	2 cut(s)	987, 1444
GluI	GCNGC	9 cut(s)	345, 348, 1206, 1566, 2358, 3193, 3276, 5446, 5481
GsaI	CCCAGC	3 cut(s)	396, 2369, 3242
GsuI	CTGGAG	5 cut(s)	134, 949, 1320, 2519, 4973
HaeIII	GGCC	9 cut(s)	335, 359, 576, 1500, 1642, 3507, 3565, 3638, 5164
HapII	CCGG	3 cut(s)	549, 2890, 4688
HgaI	GACGC	1 cut(s)	2122
HhaI	GCGC	2 cut(s)	988, 1445
Hin6I	GCGC	2 cut(s)	986, 1443
HinP1I	GCGC	2 cut(s)	986, 1443
HincII	GTYRAC	5 cut(s)	583, 763, 1081, 1880, 4645
HindII	GTYRAC	5 cut(s)	583, 763, 1081, 1880, 4645
HindIII	AAGCTT	1 cut(s)	3267
HpaI	GTTAAC	2 cut(s)	583, 1081
HpaII	CCGG	3 cut(s)	549, 2890, 4688
Hpy99I	CGWCG	2 cut(s)	122, 4943
HpyCH4IV	ACGT	5 cut(s)	117, 3544, 4038, 4587, 4941
HpyF10VI	GCNNNNNNNGC	6 cut(s)	341, 356, 985, 1273, 3189, 3275
HpySE526I	ACGT	5 cut(s)	117, 3544, 4038, 4587, 4941
HspAI	GCGC	2 cut(s)	986, 1443
KflI	GGGWCCC	2 cut(s)	226, 3898
Ksp22I	TGATCA	5 cut(s)	1117, 2752, 4107, 4144, 5086
KspAI	GTTAAC	2 cut(s)	583, 1081
LmnI	GCTCC	5 cut(s)	1153, 1805, 5053, 5380, 5453
Lsp1109I	GCAGC	9 cut(s)	331, 359, 1192, 1577, 2344, 3204, 3262, 5457, 5467
MaeI	CTAG	6 cut(s)	2384, 2976, 3300, 3390, 4028, 4469
MaeII	ACGT	5 cut(s)	117, 3544, 4038, 4587, 4941
MfeI	CAATTG	2 cut(s)	1125, 2573
MflI	RGATCY	4 cut(s)	2048, 2146, 2616, 4378
MhlI	GDGCHC	5 cut(s)	2392, 2963, 3509, 3786, 4730
MlsI	TGGCCA	3 cut(s)	359, 1500, 3638
MluNI	TGGCCA	3 cut(s)	359, 1500, 3638
MlyI	GAGTC	6 cut(s)	6, 665, 2291, 3761, 4377, 5446
MmeI	TCCRAC	9 cut(s)	158, 1049, 2280, 2593, 2654, 3051, 3420, 4096, 4962
Mox20I	TGGCCA	3 cut(s)	359, 1500, 3638
Mph1103I	ATGCAT	2 cut(s)	3368, 5064
MroXI	GAANNNNTTC	2 cut(s)	2093, 4739
MscI	TGGCCA	3 cut(s)	359, 1500, 3638
MslI	CAYNNNNRTG	6 cut(s)	437, 1580, 2724, 3351, 4815, 5490
Msp20I	TGGCCA	3 cut(s)	359, 1500, 3638
MspA1I	CMGCKG	3 cut(s)	812, 2115, 5480
MspCI	CTTAAG	2 cut(s)	4130, 4441
MspI	CCGG	3 cut(s)	549, 2890, 4688
MspR9I	CCNGG	6 cut(s)	389, 550, 928, 2943, 2997, 4976
MunI	CAATTG	2 cut(s)	1125, 2573
Mva1269I	GAATGC	3 cut(s)	2615, 2716, 5115
MvaI	CCWGG	5 cut(s)	389, 928, 2943, 2997, 4976
MvnI	CGCG	1 cut(s)	3492
MwoI	GCNNNNNNNGC	6 cut(s)	341, 356, 985, 1273, 3189, 3275
NciI	CCSGG	1 cut(s)	550
NcoI	CCATGG	2 cut(s)	206, 3702
NdeI	CATATG	1 cut(s)	2881
NmeAIII	GCCGAG	1 cut(s)	467
NsbI	TGCGCA	2 cut(s)	987, 1444
NsiI	ATGCAT	2 cut(s)	3368, 5064
NspI	RCATGY	6 cut(s)	495, 894, 2790, 3581, 3608, 5066
NspV	TTCGAA	1 cut(s)	6
OliI	CACNNNNGTG	1 cut(s)	1580
PaeI	GCATGC	1 cut(s)	2790
PaeR7I	CTCGAG	1 cut(s)	1715
PagI	TCATGA	2 cut(s)	3352, 4104
PceI	AGGCCT	1 cut(s)	1642
PciI	ACATGT	1 cut(s)	890
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PctI	GAATGC	3 cut(s)	2615, 2716, 5115
PdmI	GAANNNNTTC	2 cut(s)	2093, 4739
PflMI	CCANNNNNTGG	1 cut(s)	2575
PkrI	GCNGC	9 cut(s)	346, 349, 1207, 1567, 2359, 3194, 3277, 5447, 5482
PleI	GAGTC	6 cut(s)	6, 665, 2290, 3761, 4376, 5445
PpsI	GAGTC	6 cut(s)	6, 665, 2290, 3761, 4376, 5445
Ppu21I	YACGTR	1 cut(s)	3545
PpuMI	RGGWCCY	4 cut(s)	226, 1840, 3045, 3898
PscI	ACATGT	1 cut(s)	890
PshAI	GACNNNNGTC	2 cut(s)	1317, 1885
PshBI	ATTAAT	2 cut(s)	3410, 4305
Psp124BI	GAGCTC	2 cut(s)	2963, 4730
Psp5II	RGGWCCY	4 cut(s)	226, 1840, 3045, 3898
Psp6I	CCWGG	5 cut(s)	387, 926, 2941, 2995, 4974
PspEI	GGTNACC	2 cut(s)	3116, 5336
PspFI	CCCAGC	3 cut(s)	392, 2365, 3238
PspGI	CCWGG	5 cut(s)	387, 926, 2941, 2995, 4974
PspOMI	GGGCCC	1 cut(s)	3505
PspPPI	RGGWCCY	4 cut(s)	226, 1840, 3045, 3898
PspXI	VCTCGAGB	1 cut(s)	1715
PstI	CTGCAG	3 cut(s)	349, 1210, 1567
PsuI	RGATCY	4 cut(s)	2048, 2146, 2616, 4378
PvuII	CAGCTG	2 cut(s)	2115, 5480
RseI	CAYNNNNRTG	6 cut(s)	437, 1580, 2724, 3351, 4815, 5490
SacI	GAGCTC	2 cut(s)	2963, 4730
SalI	GTCGAC	1 cut(s)	1878
SatI	GCNGC	9 cut(s)	345, 348, 1206, 1566, 2358, 3193, 3276, 5446, 5481
ScaI	AGTACT	2 cut(s)	800, 1138
SchI	GAGTC	6 cut(s)	6, 665, 2291, 3761, 4377, 5446
ScrFI	CCNGG	6 cut(s)	389, 550, 928, 2943, 2997, 4976
SduI	GDGCHC	5 cut(s)	2392, 2963, 3509, 3786, 4730
SfcI	CTRYAG	5 cut(s)	345, 1206, 1563, 1684, 4197
Sfr274I	CTCGAG	1 cut(s)	1715
SfuI	TTCGAA	1 cut(s)	6
SinI	GGWCC	8 cut(s)	226, 1840, 3045, 3393, 3898, 4767, 4866, 5255
SlaI	CTCGAG	1 cut(s)	1715
SmiMI	CAYNNNNRTG	6 cut(s)	437, 1580, 2724, 3351, 4815, 5490
SmlI	CTYRAG	5 cut(s)	77, 523, 1715, 4130, 4441
SmoI	CTYRAG	5 cut(s)	77, 523, 1715, 4130, 4441
SpeI	ACTAGT	1 cut(s)	3299
SphI	GCATGC	1 cut(s)	2790
SseBI	AGGCCT	1 cut(s)	1642
SsiI	CCGC	4 cut(s)	638, 794, 810, 3308
SspI	AATATT	5 cut(s)	499, 2122, 2289, 4476, 4738
SspMI	CTAG	6 cut(s)	2384, 2976, 3300, 3390, 4028, 4469
SstI	GAGCTC	2 cut(s)	2963, 4730
StuI	AGGCCT	1 cut(s)	1642
StyD4I	CCNGG	6 cut(s)	387, 548, 926, 2941, 2995, 4974
StyI	CCWWGG	8 cut(s)	206, 1967, 2418, 3112, 3389, 3702, 4027, 5396
TaiI	ACGT	5 cut(s)	120, 3547, 4041, 4590, 4944
TaqII	GACCGA	5 cut(s)	32, 748, 3502, 4784, 4791
TatI	WGTACW	5 cut(s)	798, 887, 1136, 3839, 5137
TscAI	CASTG	8 cut(s)	487, 1485, 2511, 2876, 4714, 5152, 5509, 5538
TseI	GCWGC	9 cut(s)	344, 347, 1205, 1565, 2357, 3192, 3275, 5445, 5480
TspGWI	ACGGA	5 cut(s)	664, 927, 1027, 1553, 4002
TspRI	CASTG	8 cut(s)	487, 1485, 2511, 2876, 4714, 5152, 5509, 5538
Van91I	CCANNNNNTGG	1 cut(s)	2575
Vha464I	CTTAAG	2 cut(s)	4130, 4441
VpaK11BI	GGWCC	8 cut(s)	226, 1840, 3045, 3393, 3898, 4767, 4866, 5255
VspI	ATTAAT	2 cut(s)	3410, 4305
XagI	CCTNNNNNAGG	1 cut(s)	5516
XceI	RCATGY	6 cut(s)	495, 894, 2790, 3581, 3608, 5066
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2494, 2650
XhoI	CTCGAG	1 cut(s)	1715
XmaJI	CCTAGG	2 cut(s)	3389, 4027
XmiI	GTMKAC	1 cut(s)	1879
XmnI	GAANNNNTTC	2 cut(s)	2093, 4739
XspI	CTAG	6 cut(s)	2384, 2976, 3300, 3390, 4028, 4469
ZrmI	AGTACT	2 cut(s)	800, 1138
Zsp2I	ATGCAT	2 cut(s)	3368, 5064

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.