Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005202

Physical Location & Seq

Genomic Coordinates Reverse (-)

6287330 .. 6290816

Gene Structure 3487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G084600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGATTATGGGTTTCTTGAAACGCTCAGAATCTGAAAAGGGTCTCTCCATTTACACCAAAATGAGAAGGATGGGCACTGAGCCAAATGCTCGTACTTTCACTTTTTTAGTTAAAGCATGTGTTGGTGTATCTTTGCTTGGTCAGCTACATGGTCAGATAATGAAGTTTGGACATGGTTGTGATGTTTATGTTATTAGCTCACTTATTAGTATGTACTGCAAATGTGAAGCTGTGGAATTTGCTCGTAGAGTGTTTGAGGAAAGTTTGGATAAGAATTTGGCTTGTTGGACTAGCCTTATTAGTGGTTATTGTAGTAATGGGTTGGTTCATGAGGCTCGCGATTTGTTTGATGCAATGCCAGAGAGGAACAATGTTTCTTATAGCGCAATGGTTTCTGGGTATGTTTGGAATGCTTGTTTCAATGAAGCTATTGACCTGTTTCGTGAATCGAAGAGTCATGTCAGGCTCAAAGAGTCTCTTTTGGTCAGTGTTCTTAATGCTTGCGCGTCCGTGGGCGCATTCGAAGAAGGGAAATGGATTAATTTGTTTTTGAATGAAAACGGTATCGAGTATGGACTTGAGCTTGGTACCGCACTAATAGATTTTTATGCAAAATGTGGATGCATTGAAGATGCACAAGAAGTGTTCAGTATGATGCCTAGTAAAGATGTGACTACTTGGAGTGCTATGATCATGGGATTTGCTATCAATGGCGAGAATGATATGGGGCTTGCACTTTTTGCAGAAATGGAAAAGAAGGGACCTAAACCAAATGCTGTGACATTTGTTGGAGTTCTCACTGCATGCAATCACAAAACTCTGGTAAATGAAGCCTGGCGCTTGTTGGGACGCATGAGTAAAGTTTATGGTATTGCCCCAGGGATTGAGCACTATGGGTGCATGGTTGATCTCTTGGCACGCGCCGGACAAGTGAAGGATGCAGAAATATTGATAAGAAGTATGGCAATGAAACCGGACGGAGGGATATGGGGGTCTTTGCTTAATGGCTGTCTGATTCATGGCCATGCTGAGTTAGGGGATAGGGTGGGGAAGCTTCTGATTGAGTTAGAACCTCAACATAGTGGAAGGTATGTTCTTCTGGCCAACATGTATGCCGAAATGGGAAACTGGGAGGATGCAACGAGGATCAGGAAAATGATGAAGGATAGAGAAGTAGTTACAAGTTCTGCTTGGAGCTTCATCGAGATTGATGGTGTTGTCCATAAATTTGTAGCTGACGATAAGTCTCATTCTCATTCCAGAAAGATATACAAAACTTTAAACCAACTCAGAAGGGATCTTGAAGGCTTTTCAATTGGTAATGATGCATCGTTGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

447

Amino Acids

49.65

Weight (kDa)

6.21

Isoelectric Point (pI)

38.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005202)

Species	Orthologous Gene IDs
malus_domestica	MD04G1188600.v1.1 MD13G1252400.v1.1
prunus_persica	Prupe.1G084600_v2.0.a1
pyrus_communis	pycom13g22560
rosa_chinensis	RchiOBHm_Chr1g0380711 RchiOBHm_Chr3g0484681 RchiOBHm_Chr4g0401751
rosa_laevigata	RLG00000009137 RLG00000023208 RLG00000026276
rosa_multiflora	Rmu_sc0001637.1_g000010 Rmu_sc0014815.1_g000014 Rmu_sc0039959.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113990 Rroxscaffold_4G00279090 Rroxscaffold_5G00345080 Rroxscaffold_5G00353300 Rroxscaffold_6G00397530
rosa_rugosa	Rorug04G0031400
rosa_samantha	Rh1BG403400 Rh1CG417600 Rh1DG433700 Rh3AG263400 Rh3DG292100 Rh4AG108800 Rh4BG102500 Rh4CG117100
rosa_wichuraiana	Rw0G005870 Rw1G038990 Rw4G024940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	587
AccB1I	GGYRCC	1 cut(s)	587
AccII	CGCG	3 cut(s)	339, 506, 921
AciI	CCGC	1 cut(s)	591
AclWI	GGATC	2 cut(s)	1154, 1305
AcoI	YGGCCR	2 cut(s)	1021, 1101
AcsI	RAATTY	3 cut(s)	236, 274, 1226
AfaI	GTAC	3 cut(s)	94, 215, 589
AfiI	CCNNNNNNNGG	1 cut(s)	980
AflIII	ACRYGT	1 cut(s)	1107
AgsI	TTSAA	6 cut(s)	19, 421, 553, 629, 1304, 1314
AhdI	GACNNNNNGTC	1 cut(s)	1243
AjnI	CCWGG	2 cut(s)	833, 877
AloI	GAACNNNNNNTCC	2 cut(s)	1077, 1109
AluBI	AGCT	8 cut(s)	145, 198, 230, 428, 583, 1054, 1197, 1235
AluI	AGCT	8 cut(s)	145, 198, 230, 428, 583, 1054, 1197, 1235
Alw21I	GWGCWC	1 cut(s)	891
Alw26I	GTCTC	3 cut(s)	47, 480, 1251
AlwI	GGATC	2 cut(s)	1154, 1305
AlwNI	CAGNNNCTG	1 cut(s)	32
AoxI	GGCC	2 cut(s)	1021, 1101
ApoI	RAATTY	3 cut(s)	236, 274, 1226
AseI	ATTAAT	1 cut(s)	540
Asp718I	GGTACC	1 cut(s)	587
AspLEI	GCGC	5 cut(s)	386, 506, 518, 840, 923
AspS9I	GGNCC	1 cut(s)	761
AsuII	TTCGAA	1 cut(s)	522
AvaII	GGWCC	1 cut(s)	761
BaeGI	GKGCMC	1 cut(s)	77
BalI	TGGCCA	2 cut(s)	1023, 1103
BanI	GGYRCC	1 cut(s)	587
Bbv12I	GWGCWC	1 cut(s)	891
BccI	CCATC	2 cut(s)	64, 1205
BciT130I	CCWGG	2 cut(s)	835, 879
BclI	TGATCA	1 cut(s)	690
BcoDI	GTCTC	3 cut(s)	47, 480, 1251
BfaI	CTAG	2 cut(s)	291, 660
BfoI	RGCGCY	1 cut(s)	841
Bme1390I	CCNGG	2 cut(s)	835, 879
Bme18I	GGWCC	1 cut(s)	761
BmeRI	GACNNNNNGTC	1 cut(s)	1243
BmgT120I	GGNCC	1 cut(s)	761
BmiI	GGNNCC	2 cut(s)	589, 762
BmrFI	CCNGG	2 cut(s)	835, 879
BmrI	ACTGGG	1 cut(s)	1138
BmsI	GCATC	8 cut(s)	340, 611, 622, 645, 928, 1126, 1315, 1337
BmuI	ACTGGG	1 cut(s)	1138
Bpu14I	TTCGAA	1 cut(s)	522
BpuEI	CTTGAG	1 cut(s)	599
BsaI	GGTCTC	1 cut(s)	47
BsaJI	CCNNGG	3 cut(s)	510, 877, 878
BsaWI	WCCGGW	1 cut(s)	973
Bsc4I	CCNNNNNNNGG	1 cut(s)	980
Bse1I	ACTGG	1 cut(s)	1133
Bse3DI	GCAATG	3 cut(s)	360, 393, 972
BseBI	CCWGG	2 cut(s)	835, 879
BseDI	CCNNGG	3 cut(s)	510, 877, 878
BseGI	GGATG	4 cut(s)	75, 626, 943, 1141
BseLI	CCNNNNNNNGG	1 cut(s)	980
BseMI	GCAATG	3 cut(s)	360, 393, 972
BseMII	CTCAG	4 cut(s)	39, 69, 1020, 1303
BseNI	ACTGG	1 cut(s)	1133
BseSI	GKGCMC	1 cut(s)	77
Bsh1236I	CGCG	3 cut(s)	339, 506, 921
BshFI	GGCC	2 cut(s)	1023, 1103
BshNI	GGYRCC	1 cut(s)	587
BsiHKAI	GWGCWC	1 cut(s)	891
BsiSI	CCGG	2 cut(s)	924, 974
BslFI	GGGAC	2 cut(s)	774, 861
BslI	CCNNNNNNNGG	1 cut(s)	980
BsmAI	GTCTC	3 cut(s)	47, 480, 1251
BsmFI	GGGAC	2 cut(s)	774, 861
BsmI	GAATGC	2 cut(s)	415, 518
BsnI	GGCC	2 cut(s)	1023, 1103
Bso31I	GGTCTC	1 cut(s)	47
Bsp119I	TTCGAA	1 cut(s)	522
Bsp1286I	GDGCHC	2 cut(s)	77, 891
Bsp143I	GATC	4 cut(s)	690, 907, 1146, 1297
Bsp68I	TCGCGA	1 cut(s)	339
BspACI	CCGC	1 cut(s)	591
BspANI	GGCC	2 cut(s)	1023, 1103
BspCNI	CTCAG	4 cut(s)	38, 70, 1021, 1302
BspFNI	CGCG	3 cut(s)	339, 506, 921
BspHI	TCATGA	1 cut(s)	328
BspLI	GGNNCC	2 cut(s)	589, 762
BspPI	GGATC	2 cut(s)	1154, 1305
BspT104I	TTCGAA	1 cut(s)	522
BspT107I	GGYRCC	1 cut(s)	587
BspTNI	GGTCTC	1 cut(s)	47
BsrDI	GCAATG	3 cut(s)	360, 393, 972
BsrI	ACTGG	1 cut(s)	1133
BssECI	CCNNGG	3 cut(s)	510, 877, 878
BssMI	GATC	4 cut(s)	690, 907, 1146, 1297
Bst2UI	CCWGG	2 cut(s)	835, 879
Bst4CI	ACNGT	1 cut(s)	563
Bst6I	CTCTTC	1 cut(s)	446
BstAPI	GCANNNNNTGC	1 cut(s)	740
BstBI	TTCGAA	1 cut(s)	522
BstC8I	GCNNGC	5 cut(s)	337, 502, 732, 805, 919
BstDEI	CTNAG	4 cut(s)	25, 78, 1029, 1289
BstDSI	CCRYGG	1 cut(s)	510
BstF5I	GGATG	4 cut(s)	75, 626, 943, 1141
BstFNI	CGCG	3 cut(s)	339, 506, 921
BstH2I	RGCGCY	1 cut(s)	841
BstHHI	GCGC	5 cut(s)	386, 506, 518, 840, 923
BstKTI	GATC	4 cut(s)	693, 910, 1149, 1300
BstMAI	GTCTC	3 cut(s)	47, 480, 1251
BstMBI	GATC	4 cut(s)	690, 907, 1146, 1297
BstMWI	GCNNNNNNNGC	2 cut(s)	142, 740
BstNI	CCWGG	2 cut(s)	835, 879
BstNSI	RCATGY	3 cut(s)	120, 807, 1111
BstSCI	CCNGG	2 cut(s)	833, 877
BstSLI	GKGCMC	1 cut(s)	77
BstUI	CGCG	3 cut(s)	339, 506, 921
BstX2I	RGATCY	1 cut(s)	1297
BstYI	RGATCY	1 cut(s)	1297
BsuRI	GGCC	2 cut(s)	1023, 1103
BtgI	CCRYGG	1 cut(s)	510
BtsCI	GGATG	4 cut(s)	75, 626, 943, 1141
BtsI	GCAGTG	1 cut(s)	798
BtsIMutI	CAGTG	3 cut(s)	75, 493, 798
BtuMI	TCGCGA	1 cut(s)	339
Cac8I	GCNNGC	5 cut(s)	337, 502, 732, 805, 919
CaiI	CAGNNNCTG	1 cut(s)	32
CciI	TCATGA	1 cut(s)	328
CfoI	GCGC	5 cut(s)	386, 506, 518, 840, 923
Cfr13I	GGNCC	1 cut(s)	761
CseI	GACGC	2 cut(s)	495, 858
Csp6I	GTAC	3 cut(s)	93, 214, 588
CviQI	GTAC	3 cut(s)	93, 214, 588
DdeI	CTNAG	4 cut(s)	25, 78, 1029, 1289
DpnI	GATC	4 cut(s)	692, 909, 1148, 1299
DpnII	GATC	4 cut(s)	690, 907, 1146, 1297
DraI	TTTAAA	1 cut(s)	1281
DriI	GACNNNNNGTC	1 cut(s)	1243
EaeI	YGGCCR	2 cut(s)	1021, 1101
Eam1104I	CTCTTC	1 cut(s)	446
Eam1105I	GACNNNNNGTC	1 cut(s)	1243
EarI	CTCTTC	1 cut(s)	446
Eco31I	GGTCTC	1 cut(s)	47
Eco47I	GGWCC	1 cut(s)	761
EcoO109I	RGGNCCY	1 cut(s)	761
EcoRII	CCWGG	2 cut(s)	833, 877
EcoT22I	ATGCAT	2 cut(s)	626, 1330
FalI	AAGNNNNNCTT	4 cut(s)	462, 494, 1174, 1206
FaqI	GGGAC	2 cut(s)	774, 861
FbaI	TGATCA	1 cut(s)	690
FokI	GGATG	4 cut(s)	82, 633, 950, 1148
FspBI	CTAG	2 cut(s)	291, 660
GlaI	GCGC	5 cut(s)	385, 505, 517, 839, 922
HaeII	RGCGCY	1 cut(s)	841
HaeIII	GGCC	2 cut(s)	1023, 1103
HapII	CCGG	2 cut(s)	924, 974
HgaI	GACGC	2 cut(s)	495, 858
HhaI	GCGC	5 cut(s)	386, 506, 518, 840, 923
Hin6I	GCGC	5 cut(s)	384, 504, 516, 838, 921
HinP1I	GCGC	5 cut(s)	384, 504, 516, 838, 921
HindIII	AAGCTT	1 cut(s)	1052
HinfI	GANTC	5 cut(s)	29, 446, 454, 473, 1015
HpaII	CCGG	2 cut(s)	924, 974
Hpy188I	TCNGA	6 cut(s)	28, 34, 156, 1014, 1059, 1292
Hpy188III	TCNNGA	8 cut(s)	16, 329, 338, 443, 1150, 1204, 1260, 1301
HpyAV	CCTTC	8 cut(s)	60, 521, 751, 928, 1080, 1156, 1287, 1298
HpyCH4III	ACNGT	1 cut(s)	563
HpyF10VI	GCNNNNNNNGC	2 cut(s)	142, 740
HpyF3I	CTNAG	4 cut(s)	25, 78, 1029, 1289
HspAI	GCGC	5 cut(s)	384, 504, 516, 838, 921
KpnI	GGTACC	1 cut(s)	591
Ksp22I	TGATCA	1 cut(s)	690
Kzo9I	GATC	4 cut(s)	690, 907, 1146, 1297
LmnI	GCTCC	1 cut(s)	1194
LweI	GCATC	8 cut(s)	340, 611, 622, 645, 928, 1126, 1315, 1337
MaeI	CTAG	2 cut(s)	291, 660
MaeIII	GTNAC	3 cut(s)	670, 778, 1177
MalI	GATC	4 cut(s)	692, 909, 1148, 1299
MboI	GATC	4 cut(s)	690, 907, 1146, 1297
MboII	GAAGA	4 cut(s)	463, 536, 641, 1088
MfeI	CAATTG	1 cut(s)	1314
MflI	RGATCY	1 cut(s)	1297
MhlI	GDGCHC	2 cut(s)	77, 891
MlsI	TGGCCA	2 cut(s)	1023, 1103
MluCI	AATT	5 cut(s)	236, 274, 541, 1226, 1314
MluNI	TGGCCA	2 cut(s)	1023, 1103
MlyI	GAGTC	2 cut(s)	463, 482
MmeI	TCCRAC	2 cut(s)	266, 769
MnlI	CCTC	7 cut(s)	250, 325, 357, 974, 1083, 1126, 1137
Mox20I	TGGCCA	2 cut(s)	1023, 1103
Mph1103I	ATGCAT	2 cut(s)	626, 1330
MscI	TGGCCA	2 cut(s)	1023, 1103
MseI	TTAA	6 cut(s)	111, 495, 540, 1002, 1280, 1339
MslI	CAYNNNNRTG	3 cut(s)	59, 177, 1023
Msp20I	TGGCCA	2 cut(s)	1023, 1103
MspI	CCGG	2 cut(s)	924, 974
MspR9I	CCNGG	2 cut(s)	835, 879
MunI	CAATTG	1 cut(s)	1314
Mva1269I	GAATGC	2 cut(s)	415, 518
MvaI	CCWGG	2 cut(s)	835, 879
MvnI	CGCG	3 cut(s)	339, 506, 921
MwoI	GCNNNNNNNGC	2 cut(s)	142, 740
NdeII	GATC	4 cut(s)	690, 907, 1146, 1297
NlaIV	GGNNCC	2 cut(s)	589, 762
NmuCI	GTSAC	2 cut(s)	670, 778
NruI	TCGCGA	1 cut(s)	339
NsiI	ATGCAT	2 cut(s)	626, 1330
NspI	RCATGY	3 cut(s)	120, 807, 1111
NspV	TTCGAA	1 cut(s)	522
PaeI	GCATGC	1 cut(s)	807
PagI	TCATGA	1 cut(s)	328
PasI	CCCWGGG	1 cut(s)	878
PciI	ACATGT	1 cut(s)	1107
PctI	GAATGC	2 cut(s)	415, 518
PfeI	GAWTC	3 cut(s)	29, 446, 1015
PleI	GAGTC	2 cut(s)	462, 481
PpsI	GAGTC	2 cut(s)	462, 481
PpuMI	RGGWCCY	1 cut(s)	761
PscI	ACATGT	1 cut(s)	1107
PshBI	ATTAAT	1 cut(s)	540
Psp5II	RGGWCCY	1 cut(s)	761
Psp6I	CCWGG	2 cut(s)	833, 877
PspGI	CCWGG	2 cut(s)	833, 877
PspN4I	GGNNCC	2 cut(s)	589, 762
PspPI	GGNCC	1 cut(s)	761
PspPPI	RGGWCCY	1 cut(s)	761
PstNI	CAGNNNCTG	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	1297
RruI	TCGCGA	1 cut(s)	339
RsaI	GTAC	3 cut(s)	94, 215, 589
RsaNI	GTAC	3 cut(s)	93, 214, 588
RseI	CAYNNNNRTG	3 cut(s)	59, 177, 1023
SaqAI	TTAA	6 cut(s)	111, 495, 540, 1002, 1280, 1339
Sau3AI	GATC	4 cut(s)	690, 907, 1146, 1297
Sau96I	GGNCC	1 cut(s)	761
SchI	GAGTC	2 cut(s)	463, 482
ScrFI	CCNGG	2 cut(s)	835, 879
SduI	GDGCHC	2 cut(s)	77, 891
SfaNI	GCATC	8 cut(s)	340, 611, 622, 645, 928, 1126, 1315, 1337
SfuI	TTCGAA	1 cut(s)	522
SinI	GGWCC	1 cut(s)	761
SmiMI	CAYNNNNRTG	3 cut(s)	59, 177, 1023
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
SphI	GCATGC	1 cut(s)	807
Sse9I	AATT	5 cut(s)	236, 274, 541, 1226, 1314
SsiI	CCGC	1 cut(s)	591
SspI	AATATT	1 cut(s)	948
SspMI	CTAG	2 cut(s)	291, 660
StyD4I	CCNGG	2 cut(s)	833, 877
TaaI	ACNGT	1 cut(s)	563
TaqI	TCGA	4 cut(s)	449, 522, 567, 1203
TasI	AATT	5 cut(s)	236, 274, 541, 1226, 1314
TatI	WGTACW	1 cut(s)	213
TfiI	GAWTC	3 cut(s)	29, 446, 1015
Tru1I	TTAA	6 cut(s)	111, 495, 540, 1002, 1280, 1339
Tru9I	TTAA	6 cut(s)	111, 495, 540, 1002, 1280, 1339
TscAI	CASTG	3 cut(s)	82, 493, 805
TseFI	GTSAC	2 cut(s)	670, 778
Tsp45I	GTSAC	2 cut(s)	670, 778
TspDTI	ATGAA	9 cut(s)	176, 317, 438, 570, 843, 983, 1007, 1175, 1189
TspGWI	ACGGA	2 cut(s)	499, 993
TspRI	CASTG	3 cut(s)	82, 493, 805
VpaK11BI	GGWCC	1 cut(s)	761
VspI	ATTAAT	1 cut(s)	540
XapI	RAATTY	3 cut(s)	236, 274, 1226
XceI	RCATGY	3 cut(s)	120, 807, 1111
XspI	CTAG	2 cut(s)	291, 660
Zsp2I	ATGCAT	2 cut(s)	626, 1330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.