Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005202

Physical Location & Seq

Genomic Coordinates Forward (+)

15343940 .. 15369398

Gene Structure 25459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00345080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGAATGCACAGTTGAGAATAATGAAAGAACTTGAAATGTTTGTGAAGACTATAAAGCCTCTCGGCTGCATTTATAAGAGCCAAAACAGTCCCCCACTTGCTGAGGAAGGGTCACGAGATGGTGAGCAGGGATGGGGAAAGCCGGAACTAGATGGTCGAGAATATTACAAGCACAAGAAGGAGTTCTTAATTCAAGGTGCTTCAAGGTGGAGGAAACACACACAAGGAGAGGTTTGGTGGTTCACTTGGATCGGATTAAAATCACGCTCCAAGGAAGGGAAGTGGATTCAGATGTATTCGGATGACCATGTTTTTGAGTATGGACTTGAGCTCGGTACGGCGGGAATAGATTTTTATGCAAAATGTGGATTCATTAAAGATGCTGAAGAGATATTTGATAAGATGCCGCGTAAAGATGTAACTACTTGGAGTGCTATGATCATGGGATATGCTATTAATGGTGAGAATGATACAGGGCTTGAACTTTTTGCTGAAATGAAAAAGAAGGGATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

171

Amino Acids

19.85

Weight (kDa)

6.84

Isoelectric Point (pI)

31.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	138 - 171	4.6e-06	PPR repeat family
PPR	PF01535	142 - 171	2.5e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005202)

Species	Orthologous Gene IDs
malus_domestica	MD04G1188600.v1.1 MD13G1252400.v1.1
prunus_persica	Prupe.1G084600_v2.0.a1
pyrus_communis	pycom13g22560
rosa_chinensis	RchiOBHm_Chr1g0380711 RchiOBHm_Chr3g0484681 RchiOBHm_Chr4g0401751
rosa_laevigata	RLG00000009137 RLG00000023208 RLG00000026276
rosa_multiflora	Rmu_sc0001637.1_g000010 Rmu_sc0014815.1_g000014 Rmu_sc0039959.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113990 Rroxscaffold_4G00279090 Rroxscaffold_5G00345080 Rroxscaffold_5G00353300 Rroxscaffold_6G00397530
rosa_rugosa	Rorug04G0031400
rosa_samantha	Rh1BG403400 Rh1CG417600 Rh1DG433700 Rh3AG263400 Rh3DG292100 Rh4AG108800 Rh4BG102500 Rh4CG117100
rosa_wichuraiana	Rw0G005870 Rw1G038990 Rw4G024940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	75, 514
AccII	CGCG	1 cut(s)	409
AciI	CCGC	2 cut(s)	341, 407
AclWI	GGATC	1 cut(s)	257
AcuI	CTGAAG	1 cut(s)	405
AfaI	GTAC	1 cut(s)	337
AfiI	CCNNNNNNNGG	1 cut(s)	276
AgsI	TTSAA	4 cut(s)	35, 194, 204, 482
AluBI	AGCT	1 cut(s)	331
AluI	AGCT	1 cut(s)	331
Alw21I	GWGCWC	1 cut(s)	333
AlwI	GGATC	1 cut(s)	257
ApeKI	GCWGC	1 cut(s)	66
ArsI	GACNNNNNNTTYG	2 cut(s)	296, 328
AseI	ATTAAT	1 cut(s)	456
Asp700I	GAANNNNTTC	1 cut(s)	182
AsuHPI	GGTGA	2 cut(s)	134, 473
BanII	GRGCYC	1 cut(s)	333
BauI	CACGAG	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	53
Bbv12I	GWGCWC	1 cut(s)	333
BbvCI	CCTCAGC	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	53
BccI	CCATC	3 cut(s)	113, 126, 146
BceAI	ACGGC	1 cut(s)	354
BclI	TGATCA	1 cut(s)	438
BfaI	CTAG	1 cut(s)	149
BisI	GCNGC	2 cut(s)	67, 407
BlsI	GCNGC	2 cut(s)	68, 408
BmsI	GCATC	2 cut(s)	370, 393
BpiI	GAAGAC	1 cut(s)	53
Bpu10I	CCTNAGC	1 cut(s)	102
BpuEI	CTTGAG	1 cut(s)	347
BsaBI	GATNNNNATC	1 cut(s)	259
BsaJI	CCNNGG	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	1 cut(s)	276
Bse8I	GATNNNNATC	1 cut(s)	259
BseDI	CCNNGG	1 cut(s)	270
BseGI	GGATG	2 cut(s)	137, 307
BseJI	GATNNNNATC	1 cut(s)	259
BseLI	CCNNNNNNNGG	1 cut(s)	276
BseMII	CTCAG	1 cut(s)	93
BseXI	GCAGC	1 cut(s)	53
Bsh1236I	CGCG	1 cut(s)	409
BsiHKAI	GWGCWC	1 cut(s)	333
BsiSI	CCGG	1 cut(s)	143
BslFI	GGGAC	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	276
BsmFI	GGGAC	1 cut(s)	75
BsmI	GAATGC	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp143I	GATC	2 cut(s)	249, 438
BspACI	CCGC	2 cut(s)	341, 407
BspCNI	CTCAG	1 cut(s)	94
BspFNI	CGCG	1 cut(s)	409
BspPI	GGATC	1 cut(s)	257
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	2 cut(s)	249, 438
BssSI	CACGAG	1 cut(s)	114
BssT1I	CCWWGG	1 cut(s)	270
Bst2BI	CACGAG	1 cut(s)	114
Bst4CI	ACNGT	2 cut(s)	12, 89
Bst6I	CTCTTC	1 cut(s)	381
BstDEI	CTNAG	1 cut(s)	102
BstF5I	GGATG	2 cut(s)	137, 307
BstFNI	CGCG	1 cut(s)	409
BstKTI	GATC	2 cut(s)	252, 441
BstMBI	GATC	2 cut(s)	249, 438
BstUI	CGCG	1 cut(s)	409
BstV1I	GCAGC	1 cut(s)	53
BstV2I	GAAGAC	1 cut(s)	53
BtsCI	GGATG	2 cut(s)	137, 307
Csp6I	GTAC	1 cut(s)	336
CviAII	CATG	2 cut(s)	308, 442
CviJI	RGCY	6 cut(s)	58, 66, 81, 142, 331, 478
CviKI_1	RGCY	6 cut(s)	58, 66, 81, 142, 331, 478
CviQI	GTAC	1 cut(s)	336
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	2 cut(s)	251, 440
DpnII	GATC	2 cut(s)	249, 438
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
Ecl136II	GAGCTC	1 cut(s)	331
Eco130I	CCWWGG	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	333
Eco53kI	GAGCTC	1 cut(s)	331
Eco57I	CTGAAG	1 cut(s)	405
EcoICRI	GAGCTC	1 cut(s)	331
EcoT14I	CCWWGG	1 cut(s)	270
EcoT38I	GRGCYC	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	2 cut(s)	311, 445
FaiI	YATR	9 cut(s)	53, 75, 309, 321, 357, 437, 443, 450, 514
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
FaqI	GGGAC	1 cut(s)	75
FatI	CATG	2 cut(s)	307, 441
FauI	CCCGC	1 cut(s)	334
FbaI	TGATCA	1 cut(s)	438
Fnu4HI	GCNGC	2 cut(s)	67, 407
FokI	GGATG	2 cut(s)	144, 314
FriOI	GRGCYC	1 cut(s)	333
Fsp4HI	GCNGC	2 cut(s)	67, 407
FspBI	CTAG	1 cut(s)	149
GluI	GCNGC	2 cut(s)	67, 407
HapII	CCGG	1 cut(s)	143
Hin1II	CATG	2 cut(s)	311, 445
HinfI	GANTC	2 cut(s)	286, 369
HpaII	CCGG	1 cut(s)	143
HphI	GGTGA	2 cut(s)	134, 473
Hpy166II	GTNNAC	1 cut(s)	243
Hpy188I	TCNGA	3 cut(s)	254, 291, 301
Hpy188III	TCNNGA	2 cut(s)	114, 158
Hpy8I	GTNNAC	1 cut(s)	243
HpyAV	CCTTC	4 cut(s)	101, 172, 269, 499
HpyCH4III	ACNGT	2 cut(s)	12, 89
HpyCH4V	TGCA	3 cut(s)	8, 69, 359
HpyF3I	CTNAG	1 cut(s)	102
Hsp92II	CATG	2 cut(s)	311, 445
Ksp22I	TGATCA	1 cut(s)	438
Kzo9I	GATC	2 cut(s)	249, 438
LmnI	GCTCC	1 cut(s)	272
LpnPI	CCDG	3 cut(s)	113, 156, 459
Lsp1109I	GCAGC	1 cut(s)	53
LweI	GCATC	2 cut(s)	370, 393
MaeI	CTAG	1 cut(s)	149
MaeIII	GTNAC	2 cut(s)	111, 418
MalI	GATC	2 cut(s)	251, 440
MboI	GATC	2 cut(s)	249, 438
MboII	GAAGA	2 cut(s)	58, 398
MhlI	GDGCHC	1 cut(s)	333
MluCI	AATT	1 cut(s)	189
MnlI	CCTC	4 cut(s)	69, 97, 204, 223
MroXI	GAANNNNTTC	1 cut(s)	182
MseI	TTAA	4 cut(s)	188, 257, 375, 456
MspI	CCGG	1 cut(s)	143
Mva1269I	GAATGC	1 cut(s)	10
MvnI	CGCG	1 cut(s)	409
NdeII	GATC	2 cut(s)	249, 438
NlaIII	CATG	2 cut(s)	311, 445
NmeAIII	GCCGAG	1 cut(s)	42
NmuCI	GTSAC	1 cut(s)	111
PctI	GAATGC	1 cut(s)	10
PdmI	GAANNNNTTC	1 cut(s)	182
PfeI	GAWTC	2 cut(s)	286, 369
PkrI	GCNGC	2 cut(s)	68, 408
PshBI	ATTAAT	1 cut(s)	456
PsiI	TTATAA	2 cut(s)	75, 514
Psp124BI	GAGCTC	1 cut(s)	333
RsaI	GTAC	1 cut(s)	337
RsaNI	GTAC	1 cut(s)	336
SacI	GAGCTC	1 cut(s)	333
SaqAI	TTAA	4 cut(s)	188, 257, 375, 456
SatI	GCNGC	2 cut(s)	67, 407
Sau3AI	GATC	2 cut(s)	249, 438
SduI	GDGCHC	1 cut(s)	333
SetI	ASST	4 cut(s)	199, 209, 234, 333
SfaNI	GCATC	2 cut(s)	370, 393
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	1 cut(s)	189
SsiI	CCGC	2 cut(s)	341, 407
SspI	AATATT	1 cut(s)	164
SspMI	CTAG	1 cut(s)	149
SstI	GAGCTC	1 cut(s)	333
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	2 cut(s)	12, 89
TaqI	TCGA	1 cut(s)	157
TasI	AATT	1 cut(s)	189
TauI	GCSGC	1 cut(s)	409
TfiI	GAWTC	2 cut(s)	286, 369
Tru1I	TTAA	4 cut(s)	188, 257, 375, 456
Tru9I	TTAA	4 cut(s)	188, 257, 375, 456
TseFI	GTSAC	1 cut(s)	111
TseI	GCWGC	1 cut(s)	66
Tsp45I	GTSAC	1 cut(s)	111
TspDTI	ATGAA	4 cut(s)	17, 38, 361, 512
VspI	ATTAAT	1 cut(s)	456
XmnI	GAANNNNTTC	1 cut(s)	182
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.