Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00234

Orthogroup ID

OG0005202

Physical Location & Seq

Genomic Coordinates Reverse (-)

36517 .. 37934

Gene Structure 1418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G005870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGTTTCGGGTTATGTTCAGAATGCTTGTTTCAACAAAGCTATTGATTTGTTTCGTGATTTCAAGCGTCGTCGTGCGAATGTGAGGTTGAAAGAGTCTCTTTTGGTTAGCGTTCTTAATGCCTGTGCTTCTGTGGGTGCATTCGAGGAAGGGAAGTGGATTCAGATGTATTTAGATGACCATGGTTTTGAGTATGGACTTGAGCTTGGTACGGCAGGAATAGATTTTTATGCAAAATGTGGATTCATTAAAGATGCTAAAGAGATATTTGATAAGATGCCGCGTAAAGATGTAACTACTTGGAGTGCTATGATCATGGGATATGCTACTAATGGTGAGAATGATACAGGGCTTGAACTTTTTGCTGAAATGGAAAAGAAGGGACCTAAACCAAATGCTGTGACATTTGTTGGAGTTCTCACTGCATGTAATCACAAAACTCTGTGGAATCGGAAAGGTCAATCCAAAGCAAACATGTCATTGCGGACTGCTTGTTATTCAATCACCATGTCCGTGGATTCTTCTGCTAATGATCCTGGCGAAGTAAGTTATTGCAAAGGAAACAGACAAGTGGACATCCTGTGCTATTGTGTGTCCTCGAGTCATAAGCTTCTCCAAGGGACTGAGAATTATATAAAGCTTCATCAGATTGTGGATGAAACTGTCAAGAAGCTTCAAGCTGAAGTATTTGGCTTACCTGTTAATATGCGCAGGGTTATATTTTGGCACTGTAAGGCTCGAAAAATGAATTATCCTCCTGCACACCAACTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

258

Amino Acids

29.07

Weight (kDa)

8.87

Isoelectric Point (pI)

42.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	96 - 143	6.3e-11	PPR repeat family
PPR_3	PF13812	96 - 143	6.3e-06	Pentatricopeptide repeat domain
PPR	PF01535	100 - 128	3.3e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005202)

Species	Orthologous Gene IDs
malus_domestica	MD04G1188600.v1.1 MD13G1252400.v1.1
prunus_persica	Prupe.1G084600_v2.0.a1
pyrus_communis	pycom13g22560
rosa_chinensis	RchiOBHm_Chr1g0380711 RchiOBHm_Chr3g0484681 RchiOBHm_Chr4g0401751
rosa_laevigata	RLG00000009137 RLG00000023208 RLG00000026276
rosa_multiflora	Rmu_sc0001637.1_g000010 Rmu_sc0014815.1_g000014 Rmu_sc0039959.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113990 Rroxscaffold_4G00279090 Rroxscaffold_5G00345080 Rroxscaffold_5G00353300 Rroxscaffold_6G00397530
rosa_rugosa	Rorug04G0031400
rosa_samantha	Rh1BG403400 Rh1CG417600 Rh1DG433700 Rh3AG263400 Rh3DG292100 Rh4AG108800 Rh4BG102500 Rh4CG117100
rosa_wichuraiana	Rw0G005870 Rw1G038990 Rw4G024940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	710
AccII	CGCG	1 cut(s)	283
AciI	CCGC	2 cut(s)	281, 484
AclWI	GGATC	1 cut(s)	527
AcuI	CTGAAG	1 cut(s)	702
AfaI	GTAC	1 cut(s)	211
AflIII	ACRYGT	1 cut(s)	474
AgsI	TTSAA	6 cut(s)	34, 64, 91, 356, 501, 677
AjnI	CCWGG	1 cut(s)	535
AluBI	AGCT	6 cut(s)	41, 205, 610, 640, 673, 680
AluI	AGCT	6 cut(s)	41, 205, 610, 640, 673, 680
Alw26I	GTCTC	1 cut(s)	102
AlwI	GGATC	1 cut(s)	527
Ama87I	CYCGRG	1 cut(s)	598
ArsI	GACNNNNNNTTYG	2 cut(s)	170, 202
AspLEI	GCGC	1 cut(s)	711
AspS9I	GGNCC	1 cut(s)	383
AsuHPI	GGTGA	2 cut(s)	347, 496
AvaI	CYCGRG	1 cut(s)	598
AvaII	GGWCC	1 cut(s)	383
BceAI	ACGGC	1 cut(s)	228
BciT130I	CCWGG	1 cut(s)	537
BclI	TGATCA	1 cut(s)	312
BcoDI	GTCTC	1 cut(s)	102
BisI	GCNGC	1 cut(s)	281
BlsI	GCNGC	1 cut(s)	282
Bme1390I	CCNGG	1 cut(s)	537
Bme18I	GGWCC	1 cut(s)	383
BmeT110I	CYCGRG	1 cut(s)	598
BmgT120I	GGNCC	1 cut(s)	383
BmiI	GGNNCC	1 cut(s)	384
BmrFI	CCNGG	1 cut(s)	537
BmsI	GCATC	2 cut(s)	244, 267
BpuEI	CTTGAG	1 cut(s)	221
BsaJI	CCNNGG	3 cut(s)	181, 513, 616
Bse3DI	GCAATG	1 cut(s)	479
BseBI	CCWGG	1 cut(s)	537
BseDI	CCNNGG	3 cut(s)	181, 513, 616
BseGI	GGATG	2 cut(s)	576, 661
BseMI	GCAATG	1 cut(s)	479
BseMII	CTCAG	1 cut(s)	615
BsgI	GTGCAG	1 cut(s)	744
Bsh1236I	CGCG	1 cut(s)	283
BsiHKCI	CYCGRG	1 cut(s)	598
BslFI	GGGAC	2 cut(s)	396, 634
BsmAI	GTCTC	1 cut(s)	102
BsmFI	GGGAC	2 cut(s)	396, 634
BsmI	GAATGC	2 cut(s)	28, 140
BsoBI	CYCGRG	1 cut(s)	598
Bsp143I	GATC	2 cut(s)	312, 532
Bsp19I	CCATGG	1 cut(s)	181
BspACI	CCGC	2 cut(s)	281, 484
BspCNI	CTCAG	1 cut(s)	616
BspFNI	CGCG	1 cut(s)	283
BspLI	GGNNCC	1 cut(s)	384
BspPI	GGATC	1 cut(s)	527
BsrDI	GCAATG	1 cut(s)	479
BssECI	CCNNGG	3 cut(s)	181, 513, 616
BssMI	GATC	2 cut(s)	312, 532
BssT1I	CCWWGG	2 cut(s)	181, 616
Bst2UI	CCWGG	1 cut(s)	537
Bst4CI	ACNGT	2 cut(s)	664, 731
BstDEI	CTNAG	1 cut(s)	624
BstDSI	CCRYGG	2 cut(s)	181, 513
BstF5I	GGATG	2 cut(s)	576, 661
BstFNI	CGCG	1 cut(s)	283
BstHHI	GCGC	1 cut(s)	711
BstKTI	GATC	2 cut(s)	315, 535
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	2 cut(s)	312, 532
BstNI	CCWGG	1 cut(s)	537
BstNSI	RCATGY	2 cut(s)	429, 478
BstSCI	CCNGG	1 cut(s)	535
BstUI	CGCG	1 cut(s)	283
BstXI	CCANNNNNNTGG	1 cut(s)	514
BtgI	CCRYGG	2 cut(s)	181, 513
BtsCI	GGATG	2 cut(s)	576, 661
BtsI	GCAGTG	1 cut(s)	420
BtsIMutI	CAGTG	2 cut(s)	420, 727
CfoI	GCGC	1 cut(s)	711
Cfr13I	GGNCC	1 cut(s)	383
CseI	GACGC	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	5 cut(s)	182, 316, 426, 475, 508
CviJI	RGCY	9 cut(s)	41, 205, 352, 610, 640, 673, 680, 693, 737
CviKI_1	RGCY	9 cut(s)	41, 205, 352, 610, 640, 673, 680, 693, 737
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	1 cut(s)	624
DpnI	GATC	2 cut(s)	314, 534
DpnII	GATC	2 cut(s)	312, 532
Eco130I	CCWWGG	2 cut(s)	181, 616
Eco47I	GGWCC	1 cut(s)	383
Eco57I	CTGAAG	1 cut(s)	702
Eco88I	CYCGRG	1 cut(s)	598
EcoO109I	RGGNCCY	1 cut(s)	383
EcoRII	CCWGG	1 cut(s)	535
EcoT14I	CCWWGG	2 cut(s)	181, 616
ErhI	CCWWGG	2 cut(s)	181, 616
FaeI	CATG	5 cut(s)	185, 319, 429, 478, 511
FalI	AAGNNNNNCTT	2 cut(s)	84, 116
FaqI	GGGAC	2 cut(s)	396, 634
FatI	CATG	5 cut(s)	181, 315, 425, 474, 507
FbaI	TGATCA	1 cut(s)	312
Fnu4HI	GCNGC	1 cut(s)	281
FokI	GGATG	2 cut(s)	563, 668
Fsp4HI	GCNGC	1 cut(s)	281
FspI	TGCGCA	1 cut(s)	710
GlaI	GCGC	1 cut(s)	710
GluI	GCNGC	1 cut(s)	281
HgaI	GACGC	1 cut(s)	56
HhaI	GCGC	1 cut(s)	711
Hin1II	CATG	5 cut(s)	185, 319, 429, 478, 511
Hin6I	GCGC	1 cut(s)	709
HinP1I	GCGC	1 cut(s)	709
HindIII	AAGCTT	3 cut(s)	608, 638, 671
HinfI	GANTC	6 cut(s)	95, 160, 243, 448, 518, 601
HphI	GGTGA	2 cut(s)	347, 496
Hpy166II	GTNNAC	1 cut(s)	574
Hpy188I	TCNGA	4 cut(s)	21, 165, 453, 648
Hpy188III	TCNNGA	2 cut(s)	56, 667
Hpy8I	GTNNAC	1 cut(s)	574
Hpy99I	CGWCG	2 cut(s)	72, 75
HpyAV	CCTTC	2 cut(s)	143, 373
HpyCH4III	ACNGT	2 cut(s)	664, 731
HpyCH4V	TGCA	6 cut(s)	140, 233, 425, 555, 761, 773
HpyF3I	CTNAG	1 cut(s)	624
Hsp92II	CATG	5 cut(s)	185, 319, 429, 478, 511
HspAI	GCGC	1 cut(s)	709
Ksp22I	TGATCA	1 cut(s)	312
Kzo9I	GATC	2 cut(s)	312, 532
LpnPI	CCDG	9 cut(s)	136, 201, 333, 522, 549, 593, 697, 711, 771
LweI	GCATC	2 cut(s)	244, 267
MaeIII	GTNAC	2 cut(s)	292, 400
MalI	GATC	2 cut(s)	314, 534
MboI	GATC	2 cut(s)	312, 532
MboII	GAAGA	1 cut(s)	513
MluCI	AATT	2 cut(s)	628, 748
MlyI	GAGTC	2 cut(s)	104, 610
MmeI	TCCRAC	1 cut(s)	391
MnlI	CCTC	4 cut(s)	78, 139, 607, 765
MseI	TTAA	3 cut(s)	117, 249, 702
MslI	CAYNNNNRTG	1 cut(s)	512
MspR9I	CCNGG	1 cut(s)	537
Mva1269I	GAATGC	2 cut(s)	28, 140
MvaI	CCWGG	1 cut(s)	537
MvnI	CGCG	1 cut(s)	283
NcoI	CCATGG	1 cut(s)	181
NdeII	GATC	2 cut(s)	312, 532
NlaIII	CATG	5 cut(s)	185, 319, 429, 478, 511
NlaIV	GGNNCC	1 cut(s)	384
NmuCI	GTSAC	1 cut(s)	400
NsbI	TGCGCA	1 cut(s)	710
NspI	RCATGY	2 cut(s)	429, 478
PaeR7I	CTCGAG	1 cut(s)	598
PciI	ACATGT	1 cut(s)	474
PctI	GAATGC	2 cut(s)	28, 140
PfeI	GAWTC	4 cut(s)	160, 243, 448, 518
PkrI	GCNGC	1 cut(s)	282
PleI	GAGTC	2 cut(s)	103, 609
PpsI	GAGTC	2 cut(s)	103, 609
PpuMI	RGGWCCY	1 cut(s)	383
PscI	ACATGT	1 cut(s)	474
Psp5II	RGGWCCY	1 cut(s)	383
Psp6I	CCWGG	1 cut(s)	535
PspGI	CCWGG	1 cut(s)	535
PspN4I	GGNNCC	1 cut(s)	384
PspPI	GGNCC	1 cut(s)	383
PspPPI	RGGWCCY	1 cut(s)	383
PspXI	VCTCGAGB	1 cut(s)	598
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
RseI	CAYNNNNRTG	1 cut(s)	512
SaqAI	TTAA	3 cut(s)	117, 249, 702
SatI	GCNGC	1 cut(s)	281
Sau3AI	GATC	2 cut(s)	312, 532
Sau96I	GGNCC	1 cut(s)	383
SchI	GAGTC	2 cut(s)	104, 610
ScrFI	CCNGG	1 cut(s)	537
SfaNI	GCATC	2 cut(s)	244, 267
Sfr274I	CTCGAG	1 cut(s)	598
SinI	GGWCC	1 cut(s)	383
SlaI	CTCGAG	1 cut(s)	598
SmiMI	CAYNNNNRTG	1 cut(s)	512
SmlI	CTYRAG	2 cut(s)	200, 598
SmoI	CTYRAG	2 cut(s)	200, 598
Sse9I	AATT	2 cut(s)	628, 748
SsiI	CCGC	2 cut(s)	281, 484
StyD4I	CCNGG	1 cut(s)	535
StyI	CCWWGG	2 cut(s)	181, 616
TaaI	ACNGT	2 cut(s)	664, 731
TaqI	TCGA	3 cut(s)	144, 599, 739
TasI	AATT	2 cut(s)	628, 748
TauI	GCSGC	1 cut(s)	283
TfiI	GAWTC	4 cut(s)	160, 243, 448, 518
Tru1I	TTAA	3 cut(s)	117, 249, 702
Tru9I	TTAA	3 cut(s)	117, 249, 702
TscAI	CASTG	2 cut(s)	427, 734
TseFI	GTSAC	1 cut(s)	400
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	4 cut(s)	235, 632, 672, 761
TspGWI	ACGGA	1 cut(s)	502
TspRI	CASTG	2 cut(s)	427, 734
VpaK11BI	GGWCC	1 cut(s)	383
XceI	RCATGY	2 cut(s)	429, 478
XhoI	CTCGAG	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.