Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039959.1

Orthogroup ID

OG0005202

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1160

Gene Structure 1159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039959.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1159 bp

atgagaaggataggcgccgacccaaatgctcgaactttcacagttttggttaaagcttgtgttggggtgcctttgcatgatcagatatatggtcagataatgaagtttggacatgagtgtgatgtttatgttactagcttagttattagtgtgtactgtaaattgagggctgtggaatttgctcggagagtgtttgatgaaagtttggataggaatgtggtgtgttggactagtcttgttagtgggtgttgtggcaatgggttggttgatgatgcccgtgacctgttcgataaaatgcctgagagaaatgatgtgtcttacagtgcaatggtttcgggttatgttcagaatgcttgtttcaacaaagctattgatttgtttcgtgatttcaagcgtcgtcgtgcgaatgtgaggttgaaagagtctcttttggttagtgttcttaatgcctgtgcttctgtgggtgcattcgaggaagggaactggattcagatgtatttggatgaccatggttttgagtacggacttgagctcggtacggctggaatagatttttatgcaaaatgtggattcattaaagatgctaaagagatatttgataagatgccgcttaaagatgtaactacttggagtgctatgatcatgggatatgctaccaatggtgagaatgatacagggcttgaactttttgctgaaatggaaaagaagggacctaaaccaaatgctgtgacatttgttggagttctcactgcatgtaatcacaaaactctggtaaatgaagcatggcgagtattgggacgtatgagtaaaatttatagcattgctccagatattgagcactatgggtgcatggttgatctcttggcctgtgctgggcgagtgaaagaggcagagatattgataagaagtatggcaatggaaccagaaggagttatatgggggtctttacttaatgggtgtctgatacatggccattttgagttagccggtaaggttgggaagcttctcattcaattaaagcctcaacatagtggaaggtatgttcttttagcgaacatgcatgccaaaatggaaaactgggaggatgtgttgaggctaaggaaaatgatgaaggagagagaggtagtttcaatttctgcttggagtttcatcgagattg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

386

Amino Acids

43.36

Weight (kDa)

6.52

Isoelectric Point (pI)

38.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005202)

Species	Orthologous Gene IDs
malus_domestica	MD04G1188600.v1.1 MD13G1252400.v1.1
prunus_persica	Prupe.1G084600_v2.0.a1
pyrus_communis	pycom13g22560
rosa_chinensis	RchiOBHm_Chr1g0380711 RchiOBHm_Chr3g0484681 RchiOBHm_Chr4g0401751
rosa_laevigata	RLG00000009137 RLG00000023208 RLG00000026276
rosa_multiflora	Rmu_sc0001637.1_g000010 Rmu_sc0014815.1_g000014 Rmu_sc0039959.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113990 Rroxscaffold_4G00279090 Rroxscaffold_5G00345080 Rroxscaffold_5G00353300 Rroxscaffold_6G00397530
rosa_rugosa	Rorug04G0031400
rosa_samantha	Rh1BG403400 Rh1CG417600 Rh1DG433700 Rh3AG263400 Rh3DG292100 Rh4AG108800 Rh4BG102500 Rh4CG117100
rosa_wichuraiana	Rw0G005870 Rw1G038990 Rw4G024940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	14, 67
AciI	CCGC	1 cut(s)	608
AcoI	YGGCCR	1 cut(s)	970
AcsI	RAATTY	2 cut(s)	176, 810
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	3 cut(s)	155, 521, 538
AfiI	CCNNNNNNNGG	1 cut(s)	873
AgsI	TTSAA	6 cut(s)	361, 391, 418, 683, 1013, 1131
AhlI	ACTAGT	1 cut(s)	230
AloI	GAACNNNNNNTCC	2 cut(s)	1026, 1058
AluBI	AGCT	5 cut(s)	56, 138, 368, 532, 1003
AluI	AGCT	5 cut(s)	56, 138, 368, 532, 1003
Alw21I	GWGCWC	2 cut(s)	534, 840
Alw26I	GTCTC	1 cut(s)	429
AoxI	GGCC	2 cut(s)	864, 970
ApoI	RAATTY	2 cut(s)	176, 810
ArsI	GACNNNNNNTTYG	2 cut(s)	497, 529
AspLEI	GCGC	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	710
AsuHPI	GGTGA	1 cut(s)	674
AvaII	GGWCC	1 cut(s)	710
BalI	TGGCCA	1 cut(s)	972
BanI	GGYRCC	2 cut(s)	14, 67
BanII	GRGCYC	1 cut(s)	534
Bbv12I	GWGCWC	2 cut(s)	534, 840
BceAI	ACGGC	1 cut(s)	555
BcgI	CGANNNNNNTGC	4 cut(s)	8, 42, 315, 349
BclI	TGATCA	2 cut(s)	79, 639
BcoDI	GTCTC	1 cut(s)	429
BcuI	ACTAGT	1 cut(s)	230
BfaI	CTAG	2 cut(s)	135, 231
BfoI	RGCGCY	1 cut(s)	18
BisI	GCNGC	1 cut(s)	608
BlsI	GCNGC	1 cut(s)	609
Bme18I	GGWCC	1 cut(s)	710
BmgT120I	GGNCC	1 cut(s)	710
BmiI	GGNNCC	4 cut(s)	16, 69, 711, 921
BmrI	ACTGGG	1 cut(s)	1087
BmsI	GCATC	3 cut(s)	262, 571, 594
BmuI	ACTGGG	1 cut(s)	1087
BpmI	CTGGAG	1 cut(s)	810
Bpu10I	CCTNAGC	1 cut(s)	1097
BpuEI	CTTGAG	1 cut(s)	548
BsaHI	GRCGYC	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	508
BsaXI	ACNNNNNCTCC	2 cut(s)	1073, 1103
Bsc4I	CCNNNNNNNGG	1 cut(s)	873
Bse118I	RCCGGY	1 cut(s)	986
Bse1I	ACTGG	2 cut(s)	488, 1082
Bse3DI	GCAATG	4 cut(s)	262, 333, 819, 921
BseDI	CCNNGG	1 cut(s)	508
BseGI	GGATG	2 cut(s)	508, 1090
BseLI	CCNNNNNNNGG	1 cut(s)	873
BseMI	GCAATG	4 cut(s)	262, 333, 819, 921
BseMII	CTCAG	1 cut(s)	291
BseNI	ACTGG	2 cut(s)	488, 1082
BseYI	CCCAGC	1 cut(s)	872
BshFI	GGCC	2 cut(s)	866, 972
BshNI	GGYRCC	2 cut(s)	14, 67
BsiHKAI	GWGCWC	2 cut(s)	534, 840
BsiSI	CCGG	1 cut(s)	987
BslFI	GGGAC	2 cut(s)	723, 810
BslI	CCNNNNNNNGG	1 cut(s)	873
BsmAI	GTCTC	1 cut(s)	429
BsmFI	GGGAC	2 cut(s)	723, 810
BsmI	GAATGC	2 cut(s)	355, 467
BsnI	GGCC	2 cut(s)	866, 972
Bsp1286I	GDGCHC	2 cut(s)	534, 840
Bsp143I	GATC	3 cut(s)	79, 639, 856
Bsp19I	CCATGG	1 cut(s)	508
BspACI	CCGC	1 cut(s)	608
BspANI	GGCC	2 cut(s)	866, 972
BspCNI	CTCAG	1 cut(s)	292
BspLI	GGNNCC	4 cut(s)	16, 69, 711, 921
BspT107I	GGYRCC	2 cut(s)	14, 67
BsrDI	GCAATG	4 cut(s)	262, 333, 819, 921
BsrFI	RCCGGY	1 cut(s)	986
BsrI	ACTGG	2 cut(s)	488, 1082
BssAI	RCCGGY	1 cut(s)	986
BssECI	CCNNGG	1 cut(s)	508
BssMI	GATC	3 cut(s)	79, 639, 856
BssNI	GRCGYC	1 cut(s)	15
BssT1I	CCWWGG	1 cut(s)	508
Bst4CI	ACNGT	3 cut(s)	43, 158, 323
BstACI	GRCGYC	1 cut(s)	15
BstC8I	GCNNGC	1 cut(s)	1062
BstDEI	CTNAG	3 cut(s)	139, 300, 1097
BstDSI	CCRYGG	1 cut(s)	508
BstF5I	GGATG	2 cut(s)	508, 1090
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	17
BstKTI	GATC	3 cut(s)	82, 642, 859
BstMAI	GTCTC	1 cut(s)	429
BstMBI	GATC	3 cut(s)	79, 639, 856
BstNSI	RCATGY	3 cut(s)	756, 1060, 1064
BsuRI	GGCC	2 cut(s)	866, 972
BtgI	CCRYGG	1 cut(s)	508
BtsCI	GGATG	2 cut(s)	508, 1090
BtsI	GCAGTG	1 cut(s)	747
BtsIMutI	CAGTG	2 cut(s)	328, 747
Cac8I	GCNNGC	1 cut(s)	1062
CfoI	GCGC	1 cut(s)	17
Cfr10I	RCCGGY	1 cut(s)	986
Cfr13I	GGNCC	1 cut(s)	710
CseI	GACGC	1 cut(s)	383
Csp6I	GTAC	3 cut(s)	154, 520, 537
CviQI	GTAC	3 cut(s)	154, 520, 537
DdeI	CTNAG	3 cut(s)	139, 300, 1097
DinI	GGCGCC	1 cut(s)	16
DpnI	GATC	3 cut(s)	81, 641, 858
DpnII	GATC	3 cut(s)	79, 639, 856
EaeI	YGGCCR	1 cut(s)	970
Ecl136II	GAGCTC	1 cut(s)	532
Eco130I	CCWWGG	1 cut(s)	508
Eco24I	GRGCYC	1 cut(s)	534
Eco47I	GGWCC	1 cut(s)	710
Eco53kI	GAGCTC	1 cut(s)	532
EcoICRI	GAGCTC	1 cut(s)	532
EcoO109I	RGGNCCY	1 cut(s)	710
EcoT14I	CCWWGG	1 cut(s)	508
EcoT22I	ATGCAT	1 cut(s)	1062
EcoT38I	GRGCYC	1 cut(s)	534
EgeI	GGCGCC	1 cut(s)	16
EheI	GGCGCC	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	508
FalI	AAGNNNNNCTT	2 cut(s)	411, 443
FaqI	GGGAC	2 cut(s)	723, 810
FbaI	TGATCA	2 cut(s)	79, 639
Fnu4HI	GCNGC	1 cut(s)	608
FokI	GGATG	2 cut(s)	515, 1097
FriOI	GRGCYC	1 cut(s)	534
Fsp4HI	GCNGC	1 cut(s)	608
FspBI	CTAG	2 cut(s)	135, 231
GlaI	GCGC	1 cut(s)	16
GluI	GCNGC	1 cut(s)	608
GsaI	CCCAGC	1 cut(s)	876
GsuI	CTGGAG	1 cut(s)	810
HaeII	RGCGCY	1 cut(s)	18
HaeIII	GGCC	2 cut(s)	866, 972
HapII	CCGG	1 cut(s)	987
HgaI	GACGC	1 cut(s)	383
HhaI	GCGC	1 cut(s)	17
Hin1I	GRCGYC	1 cut(s)	15
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HindIII	AAGCTT	2 cut(s)	54, 1001
HinfI	GANTC	3 cut(s)	422, 487, 570
HpaII	CCGG	1 cut(s)	987
HphI	GGTGA	1 cut(s)	674
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	6 cut(s)	84, 96, 186, 348, 492, 963
Hpy188III	TCNNGA	3 cut(s)	383, 827, 1153
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	2 cut(s)	399, 402
HpyAV	CCTTC	5 cut(s)	470, 700, 920, 1029, 1105
HpyCH4III	ACNGT	3 cut(s)	43, 158, 323
HpyCH4IV	ACGT	1 cut(s)	799
HpyCH4V	TGCA	7 cut(s)	76, 326, 467, 560, 752, 849, 1060
HpyF3I	CTNAG	3 cut(s)	139, 300, 1097
HpySE526I	ACGT	1 cut(s)	799
Hsp92I	GRCGYC	1 cut(s)	15
HspAI	GCGC	1 cut(s)	15
KasI	GGCGCC	1 cut(s)	14
Ksp22I	TGATCA	2 cut(s)	79, 639
Kzo9I	GATC	3 cut(s)	79, 639, 856
LmnI	GCTCC	1 cut(s)	829
LweI	GCATC	3 cut(s)	262, 571, 594
MaeI	CTAG	2 cut(s)	135, 231
MaeII	ACGT	1 cut(s)	799
MaeIII	GTNAC	4 cut(s)	130, 278, 619, 727
MalI	GATC	3 cut(s)	81, 641, 858
MboI	GATC	3 cut(s)	79, 639, 856
MhlI	GDGCHC	2 cut(s)	534, 840
MlsI	TGGCCA	1 cut(s)	972
MluCI	AATT	5 cut(s)	161, 176, 810, 1013, 1131
MluNI	TGGCCA	1 cut(s)	972
Mly113I	GGCGCC	1 cut(s)	15
MlyI	GAGTC	1 cut(s)	431
MmeI	TCCRAC	2 cut(s)	206, 718
MnlI	CCTC	8 cut(s)	159, 405, 466, 880, 1032, 1075, 1086, 1114
Mox20I	TGGCCA	1 cut(s)	972
Mph1103I	ATGCAT	1 cut(s)	1062
MscI	TGGCCA	1 cut(s)	972
MseI	TTAA	6 cut(s)	51, 444, 576, 612, 951, 1016
MslI	CAYNNNNRTG	1 cut(s)	117
Msp20I	TGGCCA	1 cut(s)	972
MspI	CCGG	1 cut(s)	987
Mva1269I	GAATGC	2 cut(s)	355, 467
NarI	GGCGCC	1 cut(s)	15
NcoI	CCATGG	1 cut(s)	508
NdeII	GATC	3 cut(s)	79, 639, 856
NlaIV	GGNNCC	4 cut(s)	16, 69, 711, 921
NmuCI	GTSAC	2 cut(s)	278, 727
NsiI	ATGCAT	1 cut(s)	1062
NspI	RCATGY	3 cut(s)	756, 1060, 1064
PaeI	GCATGC	1 cut(s)	1064
PctI	GAATGC	2 cut(s)	355, 467
PfeI	GAWTC	2 cut(s)	487, 570
PkrI	GCNGC	1 cut(s)	609
PleI	GAGTC	1 cut(s)	430
PluTI	GGCGCC	1 cut(s)	18
PpsI	GAGTC	1 cut(s)	430
PpuMI	RGGWCCY	1 cut(s)	710
Psp124BI	GAGCTC	1 cut(s)	534
Psp5II	RGGWCCY	1 cut(s)	710
PspFI	CCCAGC	1 cut(s)	872
PspN4I	GGNNCC	4 cut(s)	16, 69, 711, 921
PspPI	GGNCC	1 cut(s)	710
PspPPI	RGGWCCY	1 cut(s)	710
RsaI	GTAC	3 cut(s)	155, 521, 538
RsaNI	GTAC	3 cut(s)	154, 520, 537
RseI	CAYNNNNRTG	1 cut(s)	117
SacI	GAGCTC	1 cut(s)	534
SaqAI	TTAA	6 cut(s)	51, 444, 576, 612, 951, 1016
SatI	GCNGC	1 cut(s)	608
Sau3AI	GATC	3 cut(s)	79, 639, 856
Sau96I	GGNCC	1 cut(s)	710
SchI	GAGTC	1 cut(s)	431
SduI	GDGCHC	2 cut(s)	534, 840
SfaNI	GCATC	3 cut(s)	262, 571, 594
SfoI	GGCGCC	1 cut(s)	16
SinI	GGWCC	1 cut(s)	710
SmiMI	CAYNNNNRTG	1 cut(s)	117
SmlI	CTYRAG	1 cut(s)	527
SmoI	CTYRAG	1 cut(s)	527
SpeI	ACTAGT	1 cut(s)	230
SphI	GCATGC	1 cut(s)	1064
Sse9I	AATT	5 cut(s)	161, 176, 810, 1013, 1131
SsiI	CCGC	1 cut(s)	608
SspDI	GGCGCC	1 cut(s)	14
SspMI	CTAG	2 cut(s)	135, 231
SstI	GAGCTC	1 cut(s)	534
StyI	CCWWGG	1 cut(s)	508
TaaI	ACNGT	3 cut(s)	43, 158, 323
TaiI	ACGT	1 cut(s)	802
TaqI	TCGA	4 cut(s)	31, 288, 471, 1152
TasI	AATT	5 cut(s)	161, 176, 810, 1013, 1131
TatI	WGTACW	1 cut(s)	153
TauI	GCSGC	1 cut(s)	610
TfiI	GAWTC	2 cut(s)	487, 570
Tru1I	TTAA	6 cut(s)	51, 444, 576, 612, 951, 1016
Tru9I	TTAA	6 cut(s)	51, 444, 576, 612, 951, 1016
TscAI	CASTG	2 cut(s)	328, 754
TseFI	GTSAC	2 cut(s)	278, 727
Tsp45I	GTSAC	2 cut(s)	278, 727
TspDTI	ATGAA	6 cut(s)	116, 213, 562, 792, 1124, 1138
TspGWI	ACGGA	1 cut(s)	537
TspRI	CASTG	2 cut(s)	328, 754
VpaK11BI	GGWCC	1 cut(s)	710
XapI	RAATTY	2 cut(s)	176, 810
XceI	RCATGY	3 cut(s)	756, 1060, 1064
XspI	CTAG	2 cut(s)	135, 231
Zsp2I	ATGCAT	1 cut(s)	1062

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.