Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001637.1

Orthogroup ID

OG0005202

Physical Location & Seq

Genomic Coordinates Reverse (-)

42368 .. 43910

Gene Structure 1543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001637.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

atgtggtgtgttggactagtctttattagtgggtgttgtggcaatgggttggttgatgatgcccgtgacctgttcgataaaatgcctgagagaaatgatgtgtcttacagtgcaatggtttcgggttatgttcagaatgcttgtttcaacaaagctattgatttgtttcgtgatttcaagcgtcgtcgagcgaatgtgaggttgaaagagtctcctttggttagtgttcttaatgcctgtgctgctgtgggtgcattcgaggaagggaagtggattcagatgtatttggatgaccatggttttgagtatggacttgagctcggtacggctggaatagatttttatgcaaaatgtggattcattaaagatgctaaagagatatttgataagatgccgcttaaagatgtaactacttggagtgctatgatcatgggatatgctaccaatggtgagaatgatacagggcttgaactttttgctgaaatggaaaagaagggacctaaaccaaatgctgtgacatttgttggagttctcactgcatgtaatcacaaaactctggtaaatgaagcatggcgagtattgggacgtatgagtaaaatttatagcattgctccagagattgagcactatgggtgcatggttgatctcttggcccgtgctgggcgagtgaaagaggcagatatattgataagaagtatggcaatggaaccagacggagttatatgggggtctttacttaacgggtgtctgatacatggccattttgagttagccggcaaggttgggaagcttctcattcaattaaagcctcaacatagtggaaggtatgttcttttagcgaacatgcatgccaaaatggaaaactgggaggatgtgttgaggctaaggaaaatgatgaaggagagagaggtagtttcaatttctgcttggagtttcatcgagattgatggcgttatcctggcggaagtaggttattgcaaaggaaacagacaagtggacatcctgtgctattgtgtgtcctcgagtcataagcttctccaagggactgagaattatataaagcttcatcagattgtggatgaaactgtcaagaagcttcaagctgaagtatttggcttacctgttaatatgcgcagggttatattttggcactgtaaggctcgaaaaatgaattatcctcctgcacaccaacttgcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

399

Amino Acids

44.94

Weight (kDa)

7.89

Isoelectric Point (pI)

38.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005202)

Species	Orthologous Gene IDs
malus_domestica	MD04G1188600.v1.1 MD13G1252400.v1.1
prunus_persica	Prupe.1G084600_v2.0.a1
pyrus_communis	pycom13g22560
rosa_chinensis	RchiOBHm_Chr1g0380711 RchiOBHm_Chr3g0484681 RchiOBHm_Chr4g0401751
rosa_laevigata	RLG00000009137 RLG00000023208 RLG00000026276
rosa_multiflora	Rmu_sc0001637.1_g000010 Rmu_sc0014815.1_g000014 Rmu_sc0039959.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113990 Rroxscaffold_4G00279090 Rroxscaffold_5G00345080 Rroxscaffold_5G00353300 Rroxscaffold_6G00397530
rosa_rugosa	Rorug04G0031400
rosa_samantha	Rh1BG403400 Rh1CG417600 Rh1DG433700 Rh3AG263400 Rh3DG292100 Rh4AG108800 Rh4BG102500 Rh4CG117100
rosa_wichuraiana	Rw0G005870 Rw1G038990 Rw4G024940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1133
AciI	CCGC	2 cut(s)	395, 962
AcoI	YGGCCR	1 cut(s)	757
AcsI	RAATTY	1 cut(s)	597
AcuI	CTGAAG	1 cut(s)	1125
AfaI	GTAC	1 cut(s)	325
AfiI	CCNNNNNNNGG	1 cut(s)	660
AgsI	TTSAA	7 cut(s)	148, 178, 205, 470, 800, 918, 1100
AhlI	ACTAGT	1 cut(s)	16
AjnI	CCWGG	1 cut(s)	957
AloI	GAACNNNNNNTCC	2 cut(s)	813, 845
AluBI	AGCT	7 cut(s)	155, 319, 790, 1033, 1063, 1096, 1103
AluI	AGCT	7 cut(s)	155, 319, 790, 1033, 1063, 1096, 1103
Alw21I	GWGCWC	2 cut(s)	321, 627
Alw26I	GTCTC	1 cut(s)	216
Ama87I	CYCGRG	1 cut(s)	1021
AoxI	GGCC	2 cut(s)	651, 757
ApeKI	GCWGC	1 cut(s)	242
ApoI	RAATTY	1 cut(s)	597
ArsI	GACNNNNNNTTYG	2 cut(s)	284, 316
AspLEI	GCGC	1 cut(s)	1134
AspS9I	GGNCC	2 cut(s)	497, 652
AsuHPI	GGTGA	1 cut(s)	461
AvaI	CYCGRG	1 cut(s)	1021
AvaII	GGWCC	1 cut(s)	497
BalI	TGGCCA	1 cut(s)	759
BanII	GRGCYC	1 cut(s)	321
Bbv12I	GWGCWC	2 cut(s)	321, 627
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	1 cut(s)	941
BceAI	ACGGC	1 cut(s)	342
BcgI	CGANNNNNNTGC	2 cut(s)	102, 136
BciT130I	CCWGG	1 cut(s)	959
BclI	TGATCA	1 cut(s)	426
BcoDI	GTCTC	1 cut(s)	216
BcuI	ACTAGT	1 cut(s)	16
BfaI	CTAG	1 cut(s)	17
BisI	GCNGC	2 cut(s)	243, 395
BlsI	GCNGC	2 cut(s)	244, 396
Bme1390I	CCNGG	1 cut(s)	959
Bme18I	GGWCC	1 cut(s)	497
BmeT110I	CYCGRG	1 cut(s)	1021
BmgT120I	GGNCC	2 cut(s)	497, 652
BmiI	GGNNCC	2 cut(s)	498, 708
BmrFI	CCNGG	1 cut(s)	959
BmrI	ACTGGG	1 cut(s)	874
BmsI	GCATC	3 cut(s)	49, 358, 381
BmuI	ACTGGG	1 cut(s)	874
BpmI	CTGGAG	1 cut(s)	597
Bpu10I	CCTNAGC	1 cut(s)	884
BpuEI	CTTGAG	1 cut(s)	335
BsaJI	CCNNGG	2 cut(s)	295, 1039
BsaXI	ACNNNNNCTCC	2 cut(s)	860, 890
Bsc4I	CCNNNNNNNGG	1 cut(s)	660
Bse118I	RCCGGY	1 cut(s)	773
Bse1I	ACTGG	1 cut(s)	869
Bse3DI	GCAATG	4 cut(s)	49, 120, 606, 708
BseBI	CCWGG	1 cut(s)	959
BseDI	CCNNGG	2 cut(s)	295, 1039
BseGI	GGATG	4 cut(s)	295, 877, 999, 1084
BseLI	CCNNNNNNNGG	1 cut(s)	660
BseMI	GCAATG	4 cut(s)	49, 120, 606, 708
BseMII	CTCAG	2 cut(s)	78, 1038
BseNI	ACTGG	1 cut(s)	869
BseXI	GCAGC	1 cut(s)	229
BseYI	CCCAGC	1 cut(s)	659
BsgI	GTGCAG	1 cut(s)	1167
BshFI	GGCC	2 cut(s)	653, 759
BsiHKAI	GWGCWC	2 cut(s)	321, 627
BsiHKCI	CYCGRG	1 cut(s)	1021
BsiSI	CCGG	1 cut(s)	774
BslFI	GGGAC	3 cut(s)	510, 597, 1057
BslI	CCNNNNNNNGG	1 cut(s)	660
BsmAI	GTCTC	1 cut(s)	216
BsmFI	GGGAC	3 cut(s)	510, 597, 1057
BsmI	GAATGC	2 cut(s)	142, 254
BsnI	GGCC	2 cut(s)	653, 759
BsoBI	CYCGRG	1 cut(s)	1021
Bsp1286I	GDGCHC	2 cut(s)	321, 627
Bsp143I	GATC	2 cut(s)	426, 643
Bsp19I	CCATGG	1 cut(s)	295
BspACI	CCGC	2 cut(s)	395, 962
BspANI	GGCC	2 cut(s)	653, 759
BspCNI	CTCAG	2 cut(s)	79, 1039
BspLI	GGNNCC	2 cut(s)	498, 708
BsrDI	GCAATG	4 cut(s)	49, 120, 606, 708
BsrFI	RCCGGY	1 cut(s)	773
BsrI	ACTGG	1 cut(s)	869
BssAI	RCCGGY	1 cut(s)	773
BssECI	CCNNGG	2 cut(s)	295, 1039
BssMI	GATC	2 cut(s)	426, 643
BssT1I	CCWWGG	2 cut(s)	295, 1039
Bst2UI	CCWGG	1 cut(s)	959
Bst4CI	ACNGT	3 cut(s)	110, 1087, 1154
BstC8I	GCNNGC	2 cut(s)	775, 849
BstDEI	CTNAG	3 cut(s)	87, 884, 1047
BstDSI	CCRYGG	1 cut(s)	295
BstF5I	GGATG	4 cut(s)	295, 877, 999, 1084
BstHHI	GCGC	1 cut(s)	1134
BstKTI	GATC	2 cut(s)	429, 646
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	2 cut(s)	426, 643
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 251
BstNI	CCWGG	1 cut(s)	959
BstNSI	RCATGY	3 cut(s)	543, 847, 851
BstSCI	CCNGG	1 cut(s)	957
BstV1I	GCAGC	1 cut(s)	229
BsuRI	GGCC	2 cut(s)	653, 759
BtgI	CCRYGG	1 cut(s)	295
BtsCI	GGATG	4 cut(s)	295, 877, 999, 1084
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	3 cut(s)	115, 534, 1150
Cac8I	GCNNGC	2 cut(s)	775, 849
CfoI	GCGC	1 cut(s)	1134
Cfr10I	RCCGGY	1 cut(s)	773
Cfr13I	GGNCC	2 cut(s)	497, 652
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	324
CviAII	CATG	8 cut(s)	296, 430, 540, 570, 637, 755, 844, 848
CviQI	GTAC	1 cut(s)	324
DdeI	CTNAG	3 cut(s)	87, 884, 1047
DpnI	GATC	2 cut(s)	428, 645
DpnII	GATC	2 cut(s)	426, 643
EaeI	YGGCCR	1 cut(s)	757
EciI	GGCGGA	1 cut(s)	977
Ecl136II	GAGCTC	1 cut(s)	319
Eco130I	CCWWGG	2 cut(s)	295, 1039
Eco24I	GRGCYC	1 cut(s)	321
Eco47I	GGWCC	1 cut(s)	497
Eco53kI	GAGCTC	1 cut(s)	319
Eco57I	CTGAAG	1 cut(s)	1125
Eco88I	CYCGRG	1 cut(s)	1021
EcoICRI	GAGCTC	1 cut(s)	319
EcoO109I	RGGNCCY	1 cut(s)	497
EcoRII	CCWGG	1 cut(s)	957
EcoT14I	CCWWGG	2 cut(s)	295, 1039
EcoT22I	ATGCAT	1 cut(s)	849
EcoT38I	GRGCYC	1 cut(s)	321
ErhI	CCWWGG	2 cut(s)	295, 1039
FaeI	CATG	8 cut(s)	299, 433, 543, 573, 640, 758, 847, 851
FaqI	GGGAC	3 cut(s)	510, 597, 1057
FatI	CATG	8 cut(s)	295, 429, 539, 569, 636, 754, 843, 847
FbaI	TGATCA	1 cut(s)	426
Fnu4HI	GCNGC	2 cut(s)	243, 395
FokI	GGATG	4 cut(s)	302, 884, 986, 1091
FriOI	GRGCYC	1 cut(s)	321
Fsp4HI	GCNGC	2 cut(s)	243, 395
FspBI	CTAG	1 cut(s)	17
FspI	TGCGCA	1 cut(s)	1133
GlaI	GCGC	1 cut(s)	1133
GluI	GCNGC	2 cut(s)	243, 395
GsaI	CCCAGC	1 cut(s)	663
GsuI	CTGGAG	1 cut(s)	597
HaeIII	GGCC	2 cut(s)	653, 759
HapII	CCGG	1 cut(s)	774
HgaI	GACGC	1 cut(s)	170
HhaI	GCGC	1 cut(s)	1134
Hin1II	CATG	8 cut(s)	299, 433, 543, 573, 640, 758, 847, 851
Hin6I	GCGC	1 cut(s)	1132
HinP1I	GCGC	1 cut(s)	1132
HindIII	AAGCTT	4 cut(s)	788, 1031, 1061, 1094
HinfI	GANTC	4 cut(s)	209, 274, 357, 1024
HpaII	CCGG	1 cut(s)	774
HphI	GGTGA	1 cut(s)	461
Hpy166II	GTNNAC	1 cut(s)	997
Hpy188I	TCNGA	4 cut(s)	135, 279, 750, 1071
Hpy188III	TCNNGA	4 cut(s)	170, 614, 940, 1090
Hpy8I	GTNNAC	1 cut(s)	997
Hpy99I	CGWCG	2 cut(s)	186, 189
HpyAV	CCTTC	4 cut(s)	257, 487, 816, 892
HpyCH4III	ACNGT	3 cut(s)	110, 1087, 1154
HpyCH4IV	ACGT	1 cut(s)	586
HpyCH4V	TGCA	9 cut(s)	113, 254, 347, 539, 636, 847, 978, 1184, 1196
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 251
HpyF3I	CTNAG	3 cut(s)	87, 884, 1047
HpySE526I	ACGT	1 cut(s)	586
Hsp92II	CATG	8 cut(s)	299, 433, 543, 573, 640, 758, 847, 851
HspAI	GCGC	1 cut(s)	1132
KroI	GCCGGC	1 cut(s)	773
KroNI	GCCGGC	1 cut(s)	775
Ksp22I	TGATCA	1 cut(s)	426
Kzo9I	GATC	2 cut(s)	426, 643
LmnI	GCTCC	1 cut(s)	616
Lsp1109I	GCAGC	1 cut(s)	229
LweI	GCATC	3 cut(s)	49, 358, 381
MaeI	CTAG	1 cut(s)	17
MaeII	ACGT	1 cut(s)	586
MaeIII	GTNAC	3 cut(s)	65, 406, 514
MalI	GATC	2 cut(s)	428, 645
MboI	GATC	2 cut(s)	426, 643
MhlI	GDGCHC	2 cut(s)	321, 627
MlsI	TGGCCA	1 cut(s)	759
MluCI	AATT	5 cut(s)	597, 800, 918, 1051, 1171
MluNI	TGGCCA	1 cut(s)	759
MlyI	GAGTC	2 cut(s)	218, 1033
MmeI	TCCRAC	1 cut(s)	505
MnlI	CCTC	9 cut(s)	192, 253, 667, 819, 862, 873, 901, 1030, 1188
Mox20I	TGGCCA	1 cut(s)	759
Mph1103I	ATGCAT	1 cut(s)	849
MroNI	GCCGGC	1 cut(s)	773
MscI	TGGCCA	1 cut(s)	759
MseI	TTAA	6 cut(s)	231, 363, 399, 738, 803, 1125
Msp20I	TGGCCA	1 cut(s)	759
MspI	CCGG	1 cut(s)	774
MspR9I	CCNGG	1 cut(s)	959
Mva1269I	GAATGC	2 cut(s)	142, 254
MvaI	CCWGG	1 cut(s)	959
MwoI	GCNNNNNNNGC	2 cut(s)	242, 251
NaeI	GCCGGC	1 cut(s)	775
NcoI	CCATGG	1 cut(s)	295
NdeII	GATC	2 cut(s)	426, 643
NgoMIV	GCCGGC	1 cut(s)	773
NlaIII	CATG	8 cut(s)	299, 433, 543, 573, 640, 758, 847, 851
NlaIV	GGNNCC	2 cut(s)	498, 708
NmuCI	GTSAC	2 cut(s)	65, 514
NsbI	TGCGCA	1 cut(s)	1133
NsiI	ATGCAT	1 cut(s)	849
NspI	RCATGY	3 cut(s)	543, 847, 851
PaeI	GCATGC	1 cut(s)	851
PaeR7I	CTCGAG	1 cut(s)	1021
PctI	GAATGC	2 cut(s)	142, 254
PdiI	GCCGGC	1 cut(s)	775
PfeI	GAWTC	2 cut(s)	274, 357
PkrI	GCNGC	2 cut(s)	244, 396
PleI	GAGTC	2 cut(s)	217, 1032
PpsI	GAGTC	2 cut(s)	217, 1032
PpuMI	RGGWCCY	1 cut(s)	497
Psp124BI	GAGCTC	1 cut(s)	321
Psp5II	RGGWCCY	1 cut(s)	497
Psp6I	CCWGG	1 cut(s)	957
PspFI	CCCAGC	1 cut(s)	659
PspGI	CCWGG	1 cut(s)	957
PspN4I	GGNNCC	2 cut(s)	498, 708
PspPI	GGNCC	2 cut(s)	497, 652
PspPPI	RGGWCCY	1 cut(s)	497
PspXI	VCTCGAGB	1 cut(s)	1021
RsaI	GTAC	1 cut(s)	325
RsaNI	GTAC	1 cut(s)	324
SacI	GAGCTC	1 cut(s)	321
SaqAI	TTAA	6 cut(s)	231, 363, 399, 738, 803, 1125
SatI	GCNGC	2 cut(s)	243, 395
Sau3AI	GATC	2 cut(s)	426, 643
Sau96I	GGNCC	2 cut(s)	497, 652
SchI	GAGTC	2 cut(s)	218, 1033
ScrFI	CCNGG	1 cut(s)	959
SduI	GDGCHC	2 cut(s)	321, 627
SfaNI	GCATC	3 cut(s)	49, 358, 381
Sfr274I	CTCGAG	1 cut(s)	1021
SinI	GGWCC	1 cut(s)	497
SlaI	CTCGAG	1 cut(s)	1021
SmlI	CTYRAG	2 cut(s)	314, 1021
SmoI	CTYRAG	2 cut(s)	314, 1021
SpeI	ACTAGT	1 cut(s)	16
SphI	GCATGC	1 cut(s)	851
Sse9I	AATT	5 cut(s)	597, 800, 918, 1051, 1171
SsiI	CCGC	2 cut(s)	395, 962
SspMI	CTAG	1 cut(s)	17
SstI	GAGCTC	1 cut(s)	321
StyD4I	CCNGG	1 cut(s)	957
StyI	CCWWGG	2 cut(s)	295, 1039
TaaI	ACNGT	3 cut(s)	110, 1087, 1154
TaiI	ACGT	1 cut(s)	589
TaqI	TCGA	6 cut(s)	75, 187, 258, 939, 1022, 1162
TasI	AATT	5 cut(s)	597, 800, 918, 1051, 1171
TauI	GCSGC	1 cut(s)	397
TfiI	GAWTC	2 cut(s)	274, 357
Tru1I	TTAA	6 cut(s)	231, 363, 399, 738, 803, 1125
Tru9I	TTAA	6 cut(s)	231, 363, 399, 738, 803, 1125
TscAI	CASTG	3 cut(s)	115, 541, 1157
TseFI	GTSAC	2 cut(s)	65, 514
TseI	GCWGC	1 cut(s)	242
Tsp45I	GTSAC	2 cut(s)	65, 514
TspDTI	ATGAA	7 cut(s)	349, 579, 911, 925, 1055, 1095, 1184
TspGWI	ACGGA	1 cut(s)	729
TspRI	CASTG	3 cut(s)	115, 541, 1157
VpaK11BI	GGWCC	1 cut(s)	497
XapI	RAATTY	1 cut(s)	597
XceI	RCATGY	3 cut(s)	543, 847, 851
XhoI	CTCGAG	1 cut(s)	1021
XspI	CTAG	1 cut(s)	17
Zsp2I	ATGCAT	1 cut(s)	849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.