Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005202

Physical Location & Seq

Genomic Coordinates Forward (+)

4595724 .. 4599493

Gene Structure 3770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0031400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGAAATGCTCATTACCACACTTAGAAATATTTGGACTAACATTGACTTCAGCGTGCCTTAACACTATTCAACCAAACCTCCCTTTCCTCCTTCGTTCTCCGCCTCCGACAAAAACCATCCTTCTCTTCGTTCTCCGCCTCCGACCACAACCCTCCTCCTCGTCTCCGTTCTCCGGCTACAATCACAACCCGACCCTCCTCGTCCTCCTCCTTTTCCGCCTCGGACCAGCTCCTCTGCTCGAAGACGGTGAAGAGAATCAGCCTCTTCGTTCTCCGCCTCCGACCACAACCCTCCTCCTCGTCTTCATTCTCCGGCTACAATCACAACCCGACCCGCCTCGTCCTCCTCCTTTTCAGCCATGGACCAGCTCCTCTGCTCGAAGACGGATTTGTGTTTCATCTACCGAAGCTTTGTGGGCTGCATTAGAGCTTTCTGGGCATTCATGTTCTGAGCTTTCTGGGCATTCTCCATATCTGAGGAGGCTTCGAACTGTGTTATCTAGTCATGAAGGTTTCTGTAGCCAGGGCTTTGATGTTACTGTACTTGAAAATGATAGTCTTGATGATGTGGGTATCCATGGTTATTGGTATCCCTACAGGAATATATTCAGCCTTGTTGATGAGCTACAGATTAAACCCTTCACTAACTGGACTAAGTTTGCGCAATATTCAGCTGAGGGATTGGAGGTTGAATTTCCGGTATTTCGAGACCTTCCTCAGTTGCCGACTCCATTAGGAACCTTGTACTATTCACAGTTTGTTCAGTTTCCGTTGGTTGATAGATTAACTTCACTTCCTTTAACGGTTGCAGTTATTTCAAGGGAGCTCTTTACGCAGTTTGGCTGCTCACAAATGCTTTATCAGAAAGTCCTAGCACCATTGCTTCAAGTGGGTCTGTTTGCACCAGCAGAACAATGTAGTGCTGCTGCTACTCTGGGCTTGCTATCCTACATCCTTGCTTACCAGAAAGATTTTGATCTAGTGTTGTGTCGTGGAACAACTAGGGAAAAGATCTTTAAGCCGTGGATGGAGTCTATGACAACCAAAGGTTGCAAGTTTGAGAAAGGTCTAAGTGTAACAGACCTTTTGTTTAATGAGGAAACTGGCTGTATTTCTGAAGTAGTTTGTGGCAAAGAAATGTATAGTGCTGACGCGGTTGTCCTAGCTGTTGGAATCTCCACGCTTCAGAAACTTAATGAAAATAGTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00630 ko00710 ko01100 ko01120 ko01200 map00630 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

RuBisCO_small

Protein Analysis

403

Amino Acids

44.98

Weight (kDa)

5.93

Isoelectric Point (pI)

53.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005202)

Species	Orthologous Gene IDs
malus_domestica	MD04G1188600.v1.1 MD13G1252400.v1.1
prunus_persica	Prupe.1G084600_v2.0.a1
pyrus_communis	pycom13g22560
rosa_chinensis	RchiOBHm_Chr1g0380711 RchiOBHm_Chr3g0484681 RchiOBHm_Chr4g0401751
rosa_laevigata	RLG00000009137 RLG00000023208 RLG00000026276
rosa_multiflora	Rmu_sc0001637.1_g000010 Rmu_sc0014815.1_g000014 Rmu_sc0039959.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113990 Rroxscaffold_4G00279090 Rroxscaffold_5G00345080 Rroxscaffold_5G00353300 Rroxscaffold_6G00397530
rosa_rugosa	Rorug04G0031400
rosa_samantha	Rh1BG403400 Rh1CG417600 Rh1DG433700 Rh3AG263400 Rh3DG292100 Rh4AG108800 Rh4BG102500 Rh4CG117100
rosa_wichuraiana	Rw0G005870 Rw1G038990 Rw4G024940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1157
Acc16I	TGCGCA	1 cut(s)	663
AccII	CGCG	1 cut(s)	1154
AciI	CCGC	6 cut(s)	101, 136, 217, 275, 335, 1154
AcsI	RAATTY	1 cut(s)	692
AcuI	CTGAAG	3 cut(s)	33, 1137, 1169
AfaI	GTAC	3 cut(s)	543, 746, 1207
AfiI	CCNNNNNNNGG	1 cut(s)	173
AgsI	TTSAA	5 cut(s)	71, 548, 692, 819, 887
AjnI	CCWGG	1 cut(s)	522
AluBI	AGCT	9 cut(s)	230, 369, 410, 430, 454, 625, 674, 826, 1166
AluI	AGCT	9 cut(s)	230, 369, 410, 430, 454, 625, 674, 826, 1166
Alw21I	GWGCWC	1 cut(s)	828
Alw26I	GTCTC	2 cut(s)	168, 702
ApeKI	GCWGC	4 cut(s)	419, 843, 923, 926
ApoI	RAATTY	1 cut(s)	692
Asp700I	GAANNNNTTC	1 cut(s)	605
AspLEI	GCGC	1 cut(s)	664
AspS9I	GGNCC	2 cut(s)	224, 363
AsuHPI	GGTGA	1 cut(s)	260
AsuII	TTCGAA	1 cut(s)	487
AvaII	GGWCC	2 cut(s)	224, 363
BanII	GRGCYC	1 cut(s)	828
BbsI	GAAGAC	3 cut(s)	249, 295, 388
Bbv12I	GWGCWC	1 cut(s)	828
BbvCI	CCTCAGC	1 cut(s)	675
BbvI	GCAGC	4 cut(s)	406, 830, 910, 913
BccI	CCATC	2 cut(s)	125, 1021
BceAI	ACGGC	1 cut(s)	1006
BciT130I	CCWGG	1 cut(s)	524
BciVI	GTATCC	2 cut(s)	584, 600
BcoDI	GTCTC	2 cut(s)	168, 702
BfaI	CTAG	5 cut(s)	501, 872, 980, 1002, 1163
BfmI	CTRYAG	3 cut(s)	517, 595, 626
BfuI	GTATCC	2 cut(s)	584, 600
BglII	AGATCT	1 cut(s)	1011
BisI	GCNGC	4 cut(s)	420, 844, 924, 927
BlsI	GCNGC	4 cut(s)	421, 845, 925, 928
BmcAI	AGTACT	1 cut(s)	1207
Bme1390I	CCNGG	1 cut(s)	524
Bme18I	GGWCC	2 cut(s)	224, 363
BmgT120I	GGNCC	2 cut(s)	224, 363
BmiI	GGNNCC	1 cut(s)	739
BmrFI	CCNGG	1 cut(s)	524
BpiI	GAAGAC	3 cut(s)	249, 295, 388
Bpu10I	CCTNAGC	1 cut(s)	675
Bpu14I	TTCGAA	1 cut(s)	487
BsaBI	GATNNNNATC	1 cut(s)	975
BsaI	GGTCTC	1 cut(s)	702
BsaJI	CCNNGG	5 cut(s)	220, 359, 523, 577, 1022
BsaWI	WCCGGW	1 cut(s)	697
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse1I	ACTGG	2 cut(s)	653, 1108
Bse3DI	GCAATG	1 cut(s)	878
Bse8I	GATNNNNATC	1 cut(s)	975
BseBI	CCWGG	1 cut(s)	524
BseDI	CCNNGG	5 cut(s)	220, 359, 523, 577, 1022
BseGI	GGATG	3 cut(s)	117, 951, 1032
BseJI	GATNNNNATC	1 cut(s)	975
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseMI	GCAATG	1 cut(s)	878
BseMII	CTCAG	4 cut(s)	441, 467, 666, 731
BseNI	ACTGG	2 cut(s)	653, 1108
BseXI	GCAGC	4 cut(s)	406, 830, 910, 913
Bsh1236I	CGCG	1 cut(s)	1154
BsiHKAI	GWGCWC	1 cut(s)	828
BsiSI	CCGG	3 cut(s)	174, 313, 698
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmAI	GTCTC	2 cut(s)	168, 702
BsmBI	CGTCTC	1 cut(s)	168
BsmI	GAATGC	2 cut(s)	439, 463
Bso31I	GGTCTC	1 cut(s)	702
Bsp119I	TTCGAA	1 cut(s)	487
Bsp1286I	GDGCHC	1 cut(s)	828
Bsp143I	GATC	2 cut(s)	976, 1011
Bsp19I	CCATGG	2 cut(s)	359, 577
BspACI	CCGC	6 cut(s)	101, 136, 217, 275, 335, 1154
BspCNI	CTCAG	4 cut(s)	442, 468, 667, 730
BspFNI	CGCG	1 cut(s)	1154
BspHI	TCATGA	1 cut(s)	505
BspLI	GGNNCC	1 cut(s)	739
BspT104I	TTCGAA	1 cut(s)	487
BspTNI	GGTCTC	1 cut(s)	702
BsrDI	GCAATG	1 cut(s)	878
BsrI	ACTGG	2 cut(s)	653, 1108
BssECI	CCNNGG	5 cut(s)	220, 359, 523, 577, 1022
BssMI	GATC	2 cut(s)	976, 1011
BssT1I	CCWWGG	2 cut(s)	359, 577
Bst2UI	CCWGG	1 cut(s)	524
Bst4CI	ACNGT	5 cut(s)	248, 493, 541, 756, 805
Bst6I	CTCTTC	3 cut(s)	131, 246, 270
BstBI	TTCGAA	1 cut(s)	487
BstC8I	GCNNGC	2 cut(s)	55, 941
BstDEI	CTNAG	7 cut(s)	22, 450, 476, 654, 675, 717, 1070
BstDSI	CCRYGG	3 cut(s)	359, 577, 1022
BstF5I	GGATG	3 cut(s)	117, 951, 1032
BstFNI	CGCG	1 cut(s)	1154
BstHHI	GCGC	1 cut(s)	664
BstKTI	GATC	2 cut(s)	979, 1014
BstMAI	GTCTC	2 cut(s)	168, 702
BstMBI	GATC	2 cut(s)	976, 1011
BstMWI	GCNNNNNNNGC	4 cut(s)	416, 436, 460, 832
BstNI	CCWGG	1 cut(s)	524
BstSCI	CCNGG	1 cut(s)	522
BstSFI	CTRYAG	3 cut(s)	517, 595, 626
BstUI	CGCG	1 cut(s)	1154
BstV1I	GCAGC	4 cut(s)	406, 830, 910, 913
BstV2I	GAAGAC	3 cut(s)	249, 295, 388
BstX2I	RGATCY	1 cut(s)	1011
BstYI	RGATCY	1 cut(s)	1011
BsuI	GTATCC	2 cut(s)	584, 600
BtgI	CCRYGG	3 cut(s)	359, 577, 1022
BtsCI	GGATG	3 cut(s)	117, 951, 1032
Cac8I	GCNNGC	2 cut(s)	55, 941
CciI	TCATGA	1 cut(s)	505
CfoI	GCGC	1 cut(s)	664
Cfr13I	GGNCC	2 cut(s)	224, 363
CseI	GACGC	1 cut(s)	1160
Csp6I	GTAC	3 cut(s)	542, 745, 1206
CviAII	CATG	4 cut(s)	360, 444, 506, 578
CviQI	GTAC	3 cut(s)	542, 745, 1206
DdeI	CTNAG	7 cut(s)	22, 450, 476, 654, 675, 717, 1070
DpnI	GATC	2 cut(s)	978, 1013
DpnII	GATC	2 cut(s)	976, 1011
DrdI	GACNNNNNNGTC	1 cut(s)	1157
DseDI	GACNNNNNNGTC	1 cut(s)	1157
Eam1104I	CTCTTC	3 cut(s)	131, 246, 270
EarI	CTCTTC	3 cut(s)	131, 246, 270
EciI	GGCGGA	4 cut(s)	90, 125, 206, 264
Ecl136II	GAGCTC	1 cut(s)	826
Eco130I	CCWWGG	2 cut(s)	359, 577
Eco24I	GRGCYC	1 cut(s)	828
Eco31I	GGTCTC	1 cut(s)	702
Eco47I	GGWCC	2 cut(s)	224, 363
Eco53kI	GAGCTC	1 cut(s)	826
Eco57I	CTGAAG	3 cut(s)	33, 1137, 1169
EcoICRI	GAGCTC	1 cut(s)	826
EcoRII	CCWGG	1 cut(s)	522
EcoT14I	CCWWGG	2 cut(s)	359, 577
EcoT38I	GRGCYC	1 cut(s)	828
ErhI	CCWWGG	2 cut(s)	359, 577
Esp3I	CGTCTC	1 cut(s)	168
FaeI	CATG	4 cut(s)	363, 447, 509, 581
FaiI	YATR	8 cut(s)	361, 445, 472, 507, 579, 605, 1037, 1143
FatI	CATG	4 cut(s)	359, 443, 505, 577
FauI	CCCGC	1 cut(s)	342
Fnu4HI	GCNGC	4 cut(s)	420, 844, 924, 927
FokI	GGATG	3 cut(s)	104, 938, 1039
FriOI	GRGCYC	1 cut(s)	828
Fsp4HI	GCNGC	4 cut(s)	420, 844, 924, 927
FspBI	CTAG	5 cut(s)	501, 872, 980, 1002, 1163
FspI	TGCGCA	1 cut(s)	663
GlaI	GCGC	1 cut(s)	663
GluI	GCNGC	4 cut(s)	420, 844, 924, 927
HapII	CCGG	3 cut(s)	174, 313, 698
HgaI	GACGC	1 cut(s)	1160
HhaI	GCGC	1 cut(s)	664
Hin1II	CATG	4 cut(s)	363, 447, 509, 581
Hin6I	GCGC	1 cut(s)	662
HinP1I	GCGC	1 cut(s)	662
HindIII	AAGCTT	1 cut(s)	408
HinfI	GANTC	4 cut(s)	256, 727, 1031, 1173
HpaII	CCGG	3 cut(s)	174, 313, 698
HphI	GGTGA	1 cut(s)	260
Hpy188I	TCNGA	9 cut(s)	108, 143, 224, 282, 451, 477, 864, 1117, 1188
Hpy188III	TCNNGA	3 cut(s)	506, 560, 707
HpyAV	CCTTC	5 cut(s)	101, 131, 503, 649, 722
HpyCH4III	ACNGT	5 cut(s)	248, 493, 541, 756, 805
HpyCH4V	TGCA	4 cut(s)	422, 809, 902, 1053
HpyF10VI	GCNNNNNNNGC	4 cut(s)	416, 436, 460, 832
HpyF3I	CTNAG	7 cut(s)	22, 450, 476, 654, 675, 717, 1070
Hsp92II	CATG	4 cut(s)	363, 447, 509, 581
HspAI	GCGC	1 cut(s)	662
Kzo9I	GATC	2 cut(s)	976, 1011
LmnI	GCTCC	3 cut(s)	235, 374, 823
Lsp1109I	GCAGC	4 cut(s)	406, 830, 910, 913
MaeI	CTAG	5 cut(s)	501, 872, 980, 1002, 1163
MaeIII	GTNAC	2 cut(s)	535, 1075
MalI	GATC	2 cut(s)	978, 1013
MboI	GATC	2 cut(s)	976, 1011
MboII	GAAGA	6 cut(s)	118, 254, 257, 263, 295, 393
MflI	RGATCY	1 cut(s)	1011
MhlI	GDGCHC	1 cut(s)	828
MluCI	AATT	1 cut(s)	692
MlyI	GAGTC	2 cut(s)	721, 1040
MmeI	TCCRAC	4 cut(s)	131, 166, 305, 1150
MroXI	GAANNNNTTC	1 cut(s)	605
MseI	TTAA	7 cut(s)	60, 633, 785, 800, 1017, 1092, 1194
MspA1I	CMGCKG	1 cut(s)	674
MspI	CCGG	3 cut(s)	174, 313, 698
MspR9I	CCNGG	1 cut(s)	524
Mva1269I	GAATGC	2 cut(s)	439, 463
MvaI	CCWGG	1 cut(s)	524
MvnI	CGCG	1 cut(s)	1154
MwoI	GCNNNNNNNGC	4 cut(s)	416, 436, 460, 832
NcoI	CCATGG	2 cut(s)	359, 577
NdeII	GATC	2 cut(s)	976, 1011
NlaIII	CATG	4 cut(s)	363, 447, 509, 581
NlaIV	GGNNCC	1 cut(s)	739
NsbI	TGCGCA	1 cut(s)	663
NspV	TTCGAA	1 cut(s)	487
PagI	TCATGA	1 cut(s)	505
PctI	GAATGC	2 cut(s)	439, 463
PdmI	GAANNNNTTC	1 cut(s)	605
PfeI	GAWTC	2 cut(s)	256, 1173
PkrI	GCNGC	4 cut(s)	421, 845, 925, 928
PleI	GAGTC	2 cut(s)	721, 1039
PpsI	GAGTC	2 cut(s)	721, 1039
Psp124BI	GAGCTC	1 cut(s)	828
Psp6I	CCWGG	1 cut(s)	522
PspGI	CCWGG	1 cut(s)	522
PspN4I	GGNNCC	1 cut(s)	739
PspPI	GGNCC	2 cut(s)	224, 363
PsuI	RGATCY	1 cut(s)	1011
PvuII	CAGCTG	1 cut(s)	674
RsaI	GTAC	3 cut(s)	543, 746, 1207
RsaNI	GTAC	3 cut(s)	542, 745, 1206
SacI	GAGCTC	1 cut(s)	828
SaqAI	TTAA	7 cut(s)	60, 633, 785, 800, 1017, 1092, 1194
SatI	GCNGC	4 cut(s)	420, 844, 924, 927
Sau3AI	GATC	2 cut(s)	976, 1011
Sau96I	GGNCC	2 cut(s)	224, 363
ScaI	AGTACT	1 cut(s)	1207
SchI	GAGTC	2 cut(s)	721, 1040
ScrFI	CCNGG	1 cut(s)	524
SduI	GDGCHC	1 cut(s)	828
SfcI	CTRYAG	3 cut(s)	517, 595, 626
SfuI	TTCGAA	1 cut(s)	487
SinI	GGWCC	2 cut(s)	224, 363
Sse9I	AATT	1 cut(s)	692
SsiI	CCGC	6 cut(s)	101, 136, 217, 275, 335, 1154
SspI	AATATT	2 cut(s)	30, 668
SspMI	CTAG	5 cut(s)	501, 872, 980, 1002, 1163
SstI	GAGCTC	1 cut(s)	828
StyD4I	CCNGG	1 cut(s)	522
StyI	CCWWGG	2 cut(s)	359, 577
TaaI	ACNGT	5 cut(s)	248, 493, 541, 756, 805
TaqI	TCGA	4 cut(s)	240, 379, 487, 706
TasI	AATT	1 cut(s)	692
TatI	WGTACW	3 cut(s)	541, 744, 1205
TfiI	GAWTC	2 cut(s)	256, 1173
Tru1I	TTAA	7 cut(s)	60, 633, 785, 800, 1017, 1092, 1194
Tru9I	TTAA	7 cut(s)	60, 633, 785, 800, 1017, 1092, 1194
TseI	GCWGC	4 cut(s)	419, 843, 923, 926
TspDTI	ATGAA	6 cut(s)	17, 295, 387, 432, 522, 1212
TspGWI	ACGGA	3 cut(s)	156, 400, 759
VpaK11BI	GGWCC	2 cut(s)	224, 363
XapI	RAATTY	1 cut(s)	692
XmnI	GAANNNNTTC	1 cut(s)	605
XspI	CTAG	5 cut(s)	501, 872, 980, 1002, 1163
ZrmI	AGTACT	1 cut(s)	1207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.