Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0005202

Physical Location & Seq

Genomic Coordinates Reverse (-)

66523946 .. 66526069

Gene Structure 2124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G038990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGGTGAAGGGGAAGGTTCTATTGATTTGTTTCGTGATTTCAAGCGTCGTCGTGCGAATGTGAGGTTGAAAGAGTCTCTTTTGGTTAGTGTTCTTAATGCCTGTGCTTCTGTGGGTGCATTCGAGGAAGGGAAGTGGATTCAGATGTATTTGGATGACCATGGTTTTGAGTATGGACTTGACCTCGGTACGGCAGGAATAGATTTTTATGCAAAATGTGGATTCATTAAAGATGCTAAAGAGATATTTGATAAGATGCCGCGTAAAGATGTAACTACTTGGAGTGCTATGATAATGGGATATGCTACTAATGGTGAGAATGATACAGGGCTTGAACTTTTTGCTGAAATGGAAAGGAAGGGACCTAAACCAAATGCTGTGACATTTGTTGGAGTTCTCACTGCATGTAATCACAAAACTCTGATCCTGGCGGAAGTAAGTTATTGCAAAGGAAACAGACAAGTGGACATCCTGTGCTATTGTGTGTCCTCGAGTCATAAGCTTCTCCAAGGGACTGAGAATTATATAAAGCTTCATCAGATTGTGGATGAACCTGTCAAGAAGCTTCAAGCTGAAGTATTTGGCTTACCTGTTAATATGCGCAGGGTTATATTTTGGCACTGTAAGGCTCGAAAAATGAATTATCCTCCTGCACACCAACTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

222

Amino Acids

25.05

Weight (kDa)

8.11

Isoelectric Point (pI)

36.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	89 - 136	9.6e-11	PPR repeat family
PPR	PF01535	93 - 121	2.4e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005202)

Species	Orthologous Gene IDs
malus_domestica	MD04G1188600.v1.1 MD13G1252400.v1.1
prunus_persica	Prupe.1G084600_v2.0.a1
pyrus_communis	pycom13g22560
rosa_chinensis	RchiOBHm_Chr1g0380711 RchiOBHm_Chr3g0484681 RchiOBHm_Chr4g0401751
rosa_laevigata	RLG00000009137 RLG00000023208 RLG00000026276
rosa_multiflora	Rmu_sc0001637.1_g000010 Rmu_sc0014815.1_g000014 Rmu_sc0039959.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113990 Rroxscaffold_4G00279090 Rroxscaffold_5G00345080 Rroxscaffold_5G00353300 Rroxscaffold_6G00397530
rosa_rugosa	Rorug04G0031400
rosa_samantha	Rh1BG403400 Rh1CG417600 Rh1DG433700 Rh3AG263400 Rh3DG292100 Rh4AG108800 Rh4BG102500 Rh4CG117100
rosa_wichuraiana	Rw0G005870 Rw1G038990 Rw4G024940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	602
AccII	CGCG	1 cut(s)	262
AciI	CCGC	2 cut(s)	260, 431
AclWI	GGATC	1 cut(s)	418
AcuI	CTGAAG	1 cut(s)	594
AfaI	GTAC	1 cut(s)	190
AfiI	CCNNNNNNNGG	1 cut(s)	190
AgsI	TTSAA	4 cut(s)	43, 70, 335, 569
AjnI	CCWGG	1 cut(s)	426
AluBI	AGCT	4 cut(s)	502, 532, 565, 572
AluI	AGCT	4 cut(s)	502, 532, 565, 572
Alw26I	GTCTC	1 cut(s)	81
AlwI	GGATC	1 cut(s)	418
Ama87I	CYCGRG	1 cut(s)	490
ArsI	GACNNNNNNTTYG	2 cut(s)	149, 181
AspLEI	GCGC	1 cut(s)	603
AspS9I	GGNCC	1 cut(s)	362
AsuHPI	GGTGA	2 cut(s)	17, 326
AvaI	CYCGRG	1 cut(s)	490
AvaII	GGWCC	1 cut(s)	362
BceAI	ACGGC	1 cut(s)	207
BciT130I	CCWGG	1 cut(s)	428
BcoDI	GTCTC	1 cut(s)	81
BisI	GCNGC	1 cut(s)	260
BlsI	GCNGC	1 cut(s)	261
Bme1390I	CCNGG	1 cut(s)	428
Bme18I	GGWCC	1 cut(s)	362
BmeT110I	CYCGRG	1 cut(s)	490
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	1 cut(s)	363
BmrFI	CCNGG	1 cut(s)	428
BmsI	GCATC	2 cut(s)	223, 246
BsaJI	CCNNGG	3 cut(s)	160, 184, 508
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
BseBI	CCWGG	1 cut(s)	428
BseDI	CCNNGG	3 cut(s)	160, 184, 508
BseGI	GGATG	3 cut(s)	160, 468, 553
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseMII	CTCAG	1 cut(s)	507
BsgI	GTGCAG	1 cut(s)	636
Bsh1236I	CGCG	1 cut(s)	262
BsiHKCI	CYCGRG	1 cut(s)	490
BslFI	GGGAC	2 cut(s)	375, 526
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmAI	GTCTC	1 cut(s)	81
BsmFI	GGGAC	2 cut(s)	375, 526
BsmI	GAATGC	1 cut(s)	119
BsoBI	CYCGRG	1 cut(s)	490
Bsp143I	GATC	1 cut(s)	423
Bsp19I	CCATGG	1 cut(s)	160
BspACI	CCGC	2 cut(s)	260, 431
BspCNI	CTCAG	1 cut(s)	508
BspFNI	CGCG	1 cut(s)	262
BspLI	GGNNCC	1 cut(s)	363
BspPI	GGATC	1 cut(s)	418
BssECI	CCNNGG	3 cut(s)	160, 184, 508
BssMI	GATC	1 cut(s)	423
BssT1I	CCWWGG	2 cut(s)	160, 508
Bst2UI	CCWGG	1 cut(s)	428
Bst4CI	ACNGT	1 cut(s)	623
BstDEI	CTNAG	1 cut(s)	516
BstDSI	CCRYGG	1 cut(s)	160
BstF5I	GGATG	3 cut(s)	160, 468, 553
BstFNI	CGCG	1 cut(s)	262
BstHHI	GCGC	1 cut(s)	603
BstKTI	GATC	1 cut(s)	426
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	1 cut(s)	423
BstNI	CCWGG	1 cut(s)	428
BstNSI	RCATGY	1 cut(s)	408
BstSCI	CCNGG	1 cut(s)	426
BstUI	CGCG	1 cut(s)	262
BtgI	CCRYGG	1 cut(s)	160
BtsCI	GGATG	3 cut(s)	160, 468, 553
BtsI	GCAGTG	1 cut(s)	399
BtsIMutI	CAGTG	2 cut(s)	399, 619
CfoI	GCGC	1 cut(s)	603
Cfr13I	GGNCC	1 cut(s)	362
CseI	GACGC	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	189
CviAII	CATG	2 cut(s)	161, 405
CviJI	RGCY	7 cut(s)	331, 502, 532, 565, 572, 585, 629
CviKI_1	RGCY	7 cut(s)	331, 502, 532, 565, 572, 585, 629
CviQI	GTAC	1 cut(s)	189
DdeI	CTNAG	1 cut(s)	516
DpnI	GATC	1 cut(s)	425
DpnII	GATC	1 cut(s)	423
EciI	GGCGGA	1 cut(s)	446
Eco130I	CCWWGG	2 cut(s)	160, 508
Eco47I	GGWCC	1 cut(s)	362
Eco57I	CTGAAG	1 cut(s)	594
Eco88I	CYCGRG	1 cut(s)	490
EcoO109I	RGGNCCY	1 cut(s)	362
EcoRII	CCWGG	1 cut(s)	426
EcoT14I	CCWWGG	2 cut(s)	160, 508
ErhI	CCWWGG	2 cut(s)	160, 508
FaeI	CATG	2 cut(s)	164, 408
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FaqI	GGGAC	2 cut(s)	375, 526
FatI	CATG	2 cut(s)	160, 404
Fnu4HI	GCNGC	1 cut(s)	260
FokI	GGATG	3 cut(s)	167, 455, 560
Fsp4HI	GCNGC	1 cut(s)	260
FspI	TGCGCA	1 cut(s)	602
GlaI	GCGC	1 cut(s)	602
GluI	GCNGC	1 cut(s)	260
HgaI	GACGC	1 cut(s)	35
HhaI	GCGC	1 cut(s)	603
Hin1II	CATG	2 cut(s)	164, 408
Hin6I	GCGC	1 cut(s)	601
HinP1I	GCGC	1 cut(s)	601
HindIII	AAGCTT	3 cut(s)	500, 530, 563
HinfI	GANTC	4 cut(s)	74, 139, 222, 493
HphI	GGTGA	2 cut(s)	17, 326
Hpy166II	GTNNAC	1 cut(s)	466
Hpy188I	TCNGA	3 cut(s)	144, 423, 540
Hpy188III	TCNNGA	2 cut(s)	35, 559
Hpy8I	GTNNAC	1 cut(s)	466
Hpy99I	CGWCG	2 cut(s)	51, 54
HpyAV	CCTTC	3 cut(s)	8, 122, 352
HpyCH4III	ACNGT	1 cut(s)	623
HpyCH4V	TGCA	6 cut(s)	119, 212, 404, 447, 653, 665
HpyF3I	CTNAG	1 cut(s)	516
Hsp92II	CATG	2 cut(s)	164, 408
HspAI	GCGC	1 cut(s)	601
Kzo9I	GATC	1 cut(s)	423
LweI	GCATC	2 cut(s)	223, 246
MaeIII	GTNAC	2 cut(s)	271, 379
MalI	GATC	1 cut(s)	425
MboI	GATC	1 cut(s)	423
MluCI	AATT	2 cut(s)	520, 640
MlyI	GAGTC	2 cut(s)	83, 502
MmeI	TCCRAC	1 cut(s)	370
MnlI	CCTC	5 cut(s)	57, 118, 194, 499, 657
MseI	TTAA	3 cut(s)	96, 228, 594
MspR9I	CCNGG	1 cut(s)	428
Mva1269I	GAATGC	1 cut(s)	119
MvaI	CCWGG	1 cut(s)	428
MvnI	CGCG	1 cut(s)	262
NcoI	CCATGG	1 cut(s)	160
NdeII	GATC	1 cut(s)	423
NlaIII	CATG	2 cut(s)	164, 408
NlaIV	GGNNCC	1 cut(s)	363
NmuCI	GTSAC	1 cut(s)	379
NsbI	TGCGCA	1 cut(s)	602
NspI	RCATGY	1 cut(s)	408
PaeR7I	CTCGAG	1 cut(s)	490
PctI	GAATGC	1 cut(s)	119
PfeI	GAWTC	2 cut(s)	139, 222
PkrI	GCNGC	1 cut(s)	261
PleI	GAGTC	2 cut(s)	82, 501
PpsI	GAGTC	2 cut(s)	82, 501
PpuMI	RGGWCCY	1 cut(s)	362
Psp5II	RGGWCCY	1 cut(s)	362
Psp6I	CCWGG	1 cut(s)	426
PspGI	CCWGG	1 cut(s)	426
PspN4I	GGNNCC	1 cut(s)	363
PspPI	GGNCC	1 cut(s)	362
PspPPI	RGGWCCY	1 cut(s)	362
PspXI	VCTCGAGB	1 cut(s)	490
RsaI	GTAC	1 cut(s)	190
RsaNI	GTAC	1 cut(s)	189
SaqAI	TTAA	3 cut(s)	96, 228, 594
SatI	GCNGC	1 cut(s)	260
Sau3AI	GATC	1 cut(s)	423
Sau96I	GGNCC	1 cut(s)	362
SchI	GAGTC	2 cut(s)	83, 502
ScrFI	CCNGG	1 cut(s)	428
SfaNI	GCATC	2 cut(s)	223, 246
Sfr274I	CTCGAG	1 cut(s)	490
SinI	GGWCC	1 cut(s)	362
SlaI	CTCGAG	1 cut(s)	490
SmlI	CTYRAG	1 cut(s)	490
SmoI	CTYRAG	1 cut(s)	490
Sse9I	AATT	2 cut(s)	520, 640
SsiI	CCGC	2 cut(s)	260, 431
StyD4I	CCNGG	1 cut(s)	426
StyI	CCWWGG	2 cut(s)	160, 508
TaaI	ACNGT	1 cut(s)	623
TaqI	TCGA	3 cut(s)	123, 491, 631
TasI	AATT	2 cut(s)	520, 640
TauI	GCSGC	1 cut(s)	262
TfiI	GAWTC	2 cut(s)	139, 222
Tru1I	TTAA	3 cut(s)	96, 228, 594
Tru9I	TTAA	3 cut(s)	96, 228, 594
TscAI	CASTG	2 cut(s)	406, 626
TseFI	GTSAC	1 cut(s)	379
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	4 cut(s)	214, 524, 564, 653
TspRI	CASTG	2 cut(s)	406, 626
VpaK11BI	GGWCC	1 cut(s)	362
XceI	RCATGY	1 cut(s)	408
XhoI	CTCGAG	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.