Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005202

Physical Location & Seq

Genomic Coordinates Reverse (-)

31009771 .. 31009995

Gene Structure 225 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00353300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGTATTTGGATGACCATGGTTTTGAGTATGGACTTGAGCTCGGTACGGCAGGAATAGATTTTTATGCAAAATGTGGATTCATTAAAGATGCTGAAGAGATATTTGATAAGATGCCGCGTAAAGATGTAACTACTTGGAGTGCTATGATCATGGGATATGCTATTAATGGTGAGAATGATACAGGGCTTGAACTTTTTGCTGAAATGGAAAAGAAGGGATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

74

Amino Acids

8.35

Weight (kDa)

4.34

Isoelectric Point (pI)

22.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	41 - 74	3.9e-06	PPR repeat family
PPR	PF01535	45 - 74	1.2e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005202)

Species	Orthologous Gene IDs
malus_domestica	MD04G1188600.v1.1 MD13G1252400.v1.1
prunus_persica	Prupe.1G084600_v2.0.a1
pyrus_communis	pycom13g22560
rosa_chinensis	RchiOBHm_Chr1g0380711 RchiOBHm_Chr3g0484681 RchiOBHm_Chr4g0401751
rosa_laevigata	RLG00000009137 RLG00000023208 RLG00000026276
rosa_multiflora	Rmu_sc0001637.1_g000010 Rmu_sc0014815.1_g000014 Rmu_sc0039959.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113990 Rroxscaffold_4G00279090 Rroxscaffold_5G00345080 Rroxscaffold_5G00353300 Rroxscaffold_6G00397530
rosa_rugosa	Rorug04G0031400
rosa_samantha	Rh1BG403400 Rh1CG417600 Rh1DG433700 Rh3AG263400 Rh3DG292100 Rh4AG108800 Rh4BG102500 Rh4CG117100
rosa_wichuraiana	Rw0G005870 Rw1G038990 Rw4G024940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	223
AccII	CGCG	1 cut(s)	118
AciI	CCGC	1 cut(s)	116
AcuI	CTGAAG	1 cut(s)	114
AfaI	GTAC	1 cut(s)	46
AgsI	TTSAA	1 cut(s)	191
AluBI	AGCT	1 cut(s)	40
AluI	AGCT	1 cut(s)	40
Alw21I	GWGCWC	1 cut(s)	42
ArsI	GACNNNNNNTTYG	1 cut(s)	37
AseI	ATTAAT	1 cut(s)	165
AsuHPI	GGTGA	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	42
BceAI	ACGGC	1 cut(s)	63
BclI	TGATCA	1 cut(s)	147
BisI	GCNGC	1 cut(s)	116
BlsI	GCNGC	1 cut(s)	117
BmsI	GCATC	2 cut(s)	79, 102
BpuEI	CTTGAG	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	16
BseDI	CCNNGG	1 cut(s)	16
BseGI	GGATG	1 cut(s)	16
Bsh1236I	CGCG	1 cut(s)	118
BsiHKAI	GWGCWC	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	1 cut(s)	147
Bsp19I	CCATGG	1 cut(s)	16
BspACI	CCGC	1 cut(s)	116
BspFNI	CGCG	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	16
BssMI	GATC	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	16
Bst6I	CTCTTC	1 cut(s)	90
BstDSI	CCRYGG	1 cut(s)	16
BstF5I	GGATG	1 cut(s)	16
BstFNI	CGCG	1 cut(s)	118
BstKTI	GATC	1 cut(s)	150
BstMBI	GATC	1 cut(s)	147
BstUI	CGCG	1 cut(s)	118
BtgI	CCRYGG	1 cut(s)	16
BtsCI	GGATG	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	45
CviAII	CATG	2 cut(s)	17, 151
CviJI	RGCY	2 cut(s)	40, 187
CviKI_1	RGCY	2 cut(s)	40, 187
CviQI	GTAC	1 cut(s)	45
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
Ecl136II	GAGCTC	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	16
Eco24I	GRGCYC	1 cut(s)	42
Eco53kI	GAGCTC	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	114
EcoICRI	GAGCTC	1 cut(s)	40
EcoT14I	CCWWGG	1 cut(s)	16
EcoT38I	GRGCYC	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	2 cut(s)	20, 154
FaiI	YATR	7 cut(s)	18, 30, 66, 146, 152, 159, 223
FatI	CATG	2 cut(s)	16, 150
FbaI	TGATCA	1 cut(s)	147
Fnu4HI	GCNGC	1 cut(s)	116
FokI	GGATG	1 cut(s)	23
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	1 cut(s)	116
GluI	GCNGC	1 cut(s)	116
Hin1II	CATG	2 cut(s)	20, 154
HinfI	GANTC	1 cut(s)	78
HphI	GGTGA	1 cut(s)	182
HpyAV	CCTTC	1 cut(s)	208
HpyCH4V	TGCA	1 cut(s)	68
Hsp92II	CATG	2 cut(s)	20, 154
Ksp22I	TGATCA	1 cut(s)	147
Kzo9I	GATC	1 cut(s)	147
LpnPI	CCDG	2 cut(s)	36, 168
LweI	GCATC	2 cut(s)	79, 102
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MboII	GAAGA	1 cut(s)	107
MhlI	GDGCHC	1 cut(s)	42
MseI	TTAA	2 cut(s)	84, 165
MvnI	CGCG	1 cut(s)	118
NcoI	CCATGG	1 cut(s)	16
NdeII	GATC	1 cut(s)	147
NlaIII	CATG	2 cut(s)	20, 154
PfeI	GAWTC	1 cut(s)	78
PkrI	GCNGC	1 cut(s)	117
PshBI	ATTAAT	1 cut(s)	165
PsiI	TTATAA	1 cut(s)	223
Psp124BI	GAGCTC	1 cut(s)	42
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
SacI	GAGCTC	1 cut(s)	42
SaqAI	TTAA	2 cut(s)	84, 165
SatI	GCNGC	1 cut(s)	116
Sau3AI	GATC	1 cut(s)	147
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	1 cut(s)	42
SfaNI	GCATC	2 cut(s)	79, 102
SgeI	CNNG	9 cut(s)	29, 47, 53, 63, 129, 147, 163, 195, 200
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
SsiI	CCGC	1 cut(s)	116
SstI	GAGCTC	1 cut(s)	42
StyI	CCWWGG	1 cut(s)	16
TauI	GCSGC	1 cut(s)	118
TfiI	GAWTC	1 cut(s)	78
Tru1I	TTAA	2 cut(s)	84, 165
Tru9I	TTAA	2 cut(s)	84, 165
TspDTI	ATGAA	1 cut(s)	70
VspI	ATTAAT	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.