DEAD-box ATP-dependent RNA helicase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G06480 AT3G06480 |
| fragaria_vesca | FvH4_4g21040 |
| malus_domestica | MD13G1145900.v1.1 MD16G1139800.v1.1 MD16G1139900.v1.1 |
| prunus_persica | Prupe.1G109600_v2.0.a1 |
| pyrus_communis | pycom13g12540 pycom16g12400 |
| rosa_chinensis | RchiOBHm_Chr2g0174651 RchiOBHm_Chr4g0426571 |
| rosa_laevigata | RLG00000007289 |
| rosa_multiflora | Rmu_co8268839.1_g000001 Rmu_sc0001821.1_g000009 Rmu_sc0007189.1_g000006 |
| rosa_roxburghii | Rroxscaffold_5G00368580 |
| rosa_rugosa | Rorug04G0213500 |
| rosa_samantha | Rh4AG268700 Rh4BG275000 Rh4CG289300 Rh4DG271800 |
| rosa_wichuraiana | Rw2G054030 Rw4G023310 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 4 cut(s) | 370, 749, 903, 1964 |
| Acc36I | ACCTGC | 5 cut(s) | 370, 749, 903, 1199, 1964 |
| AccB1I | GGYRCC | 2 cut(s) | 761, 2088 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 239 |
| AccI | GTMKAC | 1 cut(s) | 1783 |
| AccII | CGCG | 2 cut(s) | 35, 2763 |
| AciI | CCGC | 6 cut(s) | 263, 2622, 2728, 2761, 2763, 3034 |
| AclWI | GGATC | 5 cut(s) | 38, 1303, 2095, 2103, 3212 |
| AcoI | YGGCCR | 4 cut(s) | 1481, 2623, 2758, 3100 |
| AcsI | RAATTY | 2 cut(s) | 1670, 3203 |
| AcvI | CACGTG | 3 cut(s) | 1701, 3098, 3194 |
| AcyI | GRCGYC | 1 cut(s) | 2089 |
| AdeI | CACNNNGTG | 1 cut(s) | 3387 |
| AfaI | GTAC | 6 cut(s) | 825, 1232, 1842, 1937, 2423, 2876 |
| AflIII | ACRYGT | 1 cut(s) | 3193 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3069 |
| AhlI | ACTAGT | 1 cut(s) | 1310 |
| AjiI | CACGTC | 1 cut(s) | 2909 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1872, 1904 |
| Alw21I | GWGCWC | 2 cut(s) | 546, 1720 |
| Alw26I | GTCTC | 9 cut(s) | 255, 1287, 1319, 2229, 2232, 2277, 3264, 3329, 3362 |
| Alw44I | GTGCAC | 1 cut(s) | 542 |
| AlwI | GGATC | 5 cut(s) | 38, 1303, 2095, 2103, 3212 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 565, 631, 911, 3329, 3361 |
| ApaLI | GTGCAC | 1 cut(s) | 542 |
| ApoI | RAATTY | 2 cut(s) | 1670, 3203 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1859, 1891 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2988 |
| AspLEI | GCGC | 3 cut(s) | 37, 641, 2091 |
| AsuC2I | CCSGG | 4 cut(s) | 171, 745, 1779, 2504 |
| AsuHPI | GGTGA | 9 cut(s) | 884, 914, 1288, 1376, 1988, 2014, 2243, 2369, 2711 |
| AsuII | TTCGAA | 2 cut(s) | 2992, 3200 |
| AvaII | GGWCC | 7 cut(s) | 23, 792, 958, 1088, 1250, 2819, 3063 |
| BaeGI | GKGCMC | 2 cut(s) | 546, 2502 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2866, 2899 |
| BalI | TGGCCA | 1 cut(s) | 1483 |
| BanI | GGYRCC | 2 cut(s) | 761, 2088 |
| BanII | GRGCYC | 1 cut(s) | 1720 |
| BbrPI | CACGTG | 3 cut(s) | 1701, 3098, 3194 |
| BbsI | GAAGAC | 1 cut(s) | 1404 |
| Bbv12I | GWGCWC | 2 cut(s) | 546, 1720 |
| BbvCI | CCTCAGC | 3 cut(s) | 1092, 1731, 3330 |
| BccI | CCATC | 9 cut(s) | 74, 251, 748, 933, 2636, 2669, 2705, 2738, 2882 |
| BceAI | ACGGC | 6 cut(s) | 2553, 2592, 2610, 2958, 3087, 3111 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2153, 2187 |
| BciVI | GTATCC | 1 cut(s) | 1702 |
| BcnI | CCSGG | 4 cut(s) | 171, 745, 1779, 2504 |
| BcoDI | GTCTC | 9 cut(s) | 255, 1287, 1319, 2229, 2232, 2277, 3264, 3329, 3362 |
| BcuI | ACTAGT | 1 cut(s) | 1310 |
| BfaI | CTAG | 3 cut(s) | 939, 1311, 2739 |
| BfmI | CTRYAG | 2 cut(s) | 896, 2968 |
| BfoI | RGCGCY | 1 cut(s) | 2092 |
| BfuAI | ACCTGC | 5 cut(s) | 370, 749, 903, 1199, 1964 |
| BfuI | GTATCC | 1 cut(s) | 1702 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 861, 2631, 2733 |
| Bme18I | GGWCC | 7 cut(s) | 23, 792, 958, 1088, 1250, 2819, 3063 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3069 |
| BmgBI | CACGTC | 1 cut(s) | 2909 |
| BmiI | GGNNCC | 8 cut(s) | 110, 763, 793, 944, 960, 1626, 2090, 3240 |
| BmrI | ACTGGG | 6 cut(s) | 124, 798, 2251, 2403, 2421, 3159 |
| BmsI | GCATC | 6 cut(s) | 438, 463, 496, 1460, 1545, 3299 |
| BmuI | ACTGGG | 6 cut(s) | 124, 798, 2251, 2403, 2421, 3159 |
| BpiI | GAAGAC | 1 cut(s) | 1404 |
| BpmI | CTGGAG | 3 cut(s) | 2114, 2498, 3383 |
| Bpu10I | CCTNAGC | 4 cut(s) | 531, 1092, 1731, 3330 |
| Bpu14I | TTCGAA | 2 cut(s) | 2992, 3200 |
| BpuEI | CTTGAG | 2 cut(s) | 372, 2211 |
| BpuMI | CCSGG | 4 cut(s) | 171, 745, 1779, 2504 |
| BsaAI | YACGTR | 4 cut(s) | 1701, 2177, 3098, 3194 |
| BsaHI | GRCGYC | 1 cut(s) | 2089 |
| BsaI | GGTCTC | 1 cut(s) | 3362 |
| BsaWI | WCCGGW | 2 cut(s) | 1117, 2379 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 262, 292, 3061, 3091, 3127, 3157 |
| Bse3DI | GCAATG | 1 cut(s) | 972 |
| BseMI | GCAATG | 1 cut(s) | 972 |
| BseMII | CTCAG | 9 cut(s) | 266, 545, 1106, 1407, 1610, 1745, 2427, 3321, 3330 |
| BseRI | GAGGAG | 3 cut(s) | 1056, 3347, 3380 |
| BseSI | GKGCMC | 2 cut(s) | 546, 2502 |
| BseX3I | CGGCCG | 1 cut(s) | 2623 |
| BseYI | CCCAGC | 3 cut(s) | 961, 1442, 2402 |
| BsgI | GTGCAG | 4 cut(s) | 794, 1362, 1681, 2769 |
| Bsh1236I | CGCG | 2 cut(s) | 35, 2763 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1783, 2626 |
| BshNI | GGYRCC | 2 cut(s) | 761, 2088 |
| BsiEI | CGRYCG | 2 cut(s) | 1783, 2626 |
| BsiHKAI | GWGCWC | 2 cut(s) | 546, 1720 |
| BsiSI | CCGG | 7 cut(s) | 171, 745, 1118, 1779, 2380, 2504, 3133 |
| BslFI | GGGAC | 9 cut(s) | 432, 805, 922, 2051, 2231, 2817, 2919, 2931, 3253 |
| BsmAI | GTCTC | 9 cut(s) | 255, 1287, 1319, 2229, 2232, 2277, 3264, 3329, 3362 |
| BsmFI | GGGAC | 9 cut(s) | 432, 805, 922, 2051, 2231, 2817, 2919, 2931, 3253 |
| BsmI | GAATGC | 2 cut(s) | 591, 1866 |
| Bso31I | GGTCTC | 1 cut(s) | 3362 |
| Bsp119I | TTCGAA | 2 cut(s) | 2992, 3200 |
| Bsp1286I | GDGCHC | 3 cut(s) | 546, 1720, 2502 |
| Bsp1407I | TGTACA | 3 cut(s) | 823, 1230, 1935 |
| Bsp143I | GATC | 9 cut(s) | 43, 1295, 1747, 1855, 1978, 2100, 2108, 2164, 3217 |
| Bsp19I | CCATGG | 1 cut(s) | 1203 |
| BspACI | CCGC | 6 cut(s) | 263, 2622, 2728, 2761, 2763, 3034 |
| BspCNI | CTCAG | 9 cut(s) | 265, 544, 1105, 1408, 1609, 1744, 2428, 3322, 3331 |
| BspFNI | CGCG | 2 cut(s) | 35, 2763 |
| BspHI | TCATGA | 2 cut(s) | 1018, 1386 |
| BspLI | GGNNCC | 8 cut(s) | 110, 763, 793, 944, 960, 1626, 2090, 3240 |
| BspMAI | CTGCAG | 1 cut(s) | 900 |
| BspMI | ACCTGC | 5 cut(s) | 370, 749, 903, 1199, 1964 |
| BspPI | GGATC | 5 cut(s) | 38, 1303, 2095, 2103, 3212 |
| BspQI | GCTCTTC | 1 cut(s) | 1497 |
| BspT104I | TTCGAA | 2 cut(s) | 2992, 3200 |
| BspT107I | GGYRCC | 2 cut(s) | 761, 2088 |
| BspTNI | GGTCTC | 1 cut(s) | 3362 |
| BsrDI | GCAATG | 1 cut(s) | 972 |
| BsrGI | TGTACA | 3 cut(s) | 823, 1230, 1935 |
| BssMI | GATC | 9 cut(s) | 43, 1295, 1747, 1855, 1978, 2100, 2108, 2164, 3217 |
| BssNI | GRCGYC | 1 cut(s) | 2089 |
| BssT1I | CCWWGG | 3 cut(s) | 62, 601, 1203 |
| Bst4CI | ACNGT | 9 cut(s) | 977, 1037, 1235, 1383, 1612, 2052, 2858, 2882, 3152 |
| Bst6I | CTCTTC | 1 cut(s) | 1497 |
| BstACI | GRCGYC | 1 cut(s) | 2089 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 448, 631 |
| BstAUI | TGTACA | 3 cut(s) | 823, 1230, 1935 |
| BstBAI | YACGTR | 4 cut(s) | 1701, 2177, 3098, 3194 |
| BstBI | TTCGAA | 2 cut(s) | 2992, 3200 |
| BstDSI | CCRYGG | 6 cut(s) | 1033, 1203, 2305, 2626, 2761, 2857 |
| BstEII | GGTNACC | 1 cut(s) | 890 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 600, 3249 |
| BstFNI | CGCG | 2 cut(s) | 35, 2763 |
| BstH2I | RGCGCY | 1 cut(s) | 2092 |
| BstHHI | GCGC | 3 cut(s) | 37, 641, 2091 |
| BstKTI | GATC | 9 cut(s) | 46, 1298, 1750, 1858, 1981, 2103, 2111, 2167, 3220 |
| BstMAI | GTCTC | 9 cut(s) | 255, 1287, 1319, 2229, 2232, 2277, 3264, 3329, 3362 |
| BstMBI | GATC | 9 cut(s) | 43, 1295, 1747, 1855, 1978, 2100, 2108, 2164, 3217 |
| BstMCI | CGRYCG | 2 cut(s) | 1783, 2626 |
| BstNSI | RCATGY | 1 cut(s) | 871 |
| BstPI | GGTNACC | 1 cut(s) | 890 |
| BstSFI | CTRYAG | 2 cut(s) | 896, 2968 |
| BstSLI | GKGCMC | 2 cut(s) | 546, 2502 |
| BstUI | CGCG | 2 cut(s) | 35, 2763 |
| BstV2I | GAAGAC | 1 cut(s) | 1404 |
| BstX2I | RGATCY | 4 cut(s) | 1295, 2100, 2108, 3217 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 63, 848, 932 |
| BstYI | RGATCY | 4 cut(s) | 1295, 2100, 2108, 3217 |
| BstZI | CGGCCG | 1 cut(s) | 2623 |
| BsuI | GTATCC | 1 cut(s) | 1702 |
| BtgI | CCRYGG | 6 cut(s) | 1033, 1203, 2305, 2626, 2761, 2857 |
| BtgZI | GCGATG | 1 cut(s) | 2576 |
| BtrI | CACGTC | 1 cut(s) | 2909 |
| BtsI | GCAGTG | 3 cut(s) | 1938, 2020, 2737 |
| BtsIMutI | CAGTG | 8 cut(s) | 653, 1195, 1401, 1938, 2020, 2289, 2737, 3330 |
| BveI | ACCTGC | 5 cut(s) | 370, 749, 903, 1199, 1964 |
| CaiI | CAGNNNCTG | 5 cut(s) | 565, 631, 911, 3329, 3361 |
| CciI | TCATGA | 2 cut(s) | 1018, 1386 |
| CfoI | GCGC | 3 cut(s) | 37, 641, 2091 |
| Cfr42I | CCGCGG | 1 cut(s) | 2764 |
| CseI | GACGC | 1 cut(s) | 2196 |
| CsiI | ACCWGGT | 1 cut(s) | 1177 |
| Csp6I | GTAC | 6 cut(s) | 824, 1231, 1841, 1936, 2422, 2875 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 225, 260, 2278, 2313 |
| CviQI | GTAC | 6 cut(s) | 824, 1231, 1841, 1936, 2422, 2875 |
| DinI | GGCGCC | 1 cut(s) | 2090 |
| DpnI | GATC | 9 cut(s) | 45, 1297, 1749, 1857, 1980, 2102, 2110, 2166, 3219 |
| DpnII | GATC | 9 cut(s) | 43, 1295, 1747, 1855, 1978, 2100, 2108, 2164, 3217 |
| DraI | TTTAAA | 1 cut(s) | 2250 |
| DraIII | CACNNNGTG | 1 cut(s) | 3387 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3069 |
| EaeI | YGGCCR | 4 cut(s) | 1481, 2623, 2758, 3100 |
| EagI | CGGCCG | 1 cut(s) | 2623 |
| Eam1104I | CTCTTC | 1 cut(s) | 1497 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3069 |
| EarI | CTCTTC | 1 cut(s) | 1497 |
| Ecl136II | GAGCTC | 1 cut(s) | 1718 |
| EclXI | CGGCCG | 1 cut(s) | 2623 |
| Eco130I | CCWWGG | 3 cut(s) | 62, 601, 1203 |
| Eco147I | AGGCCT | 1 cut(s) | 3187 |
| Eco24I | GRGCYC | 1 cut(s) | 1720 |
| Eco31I | GGTCTC | 1 cut(s) | 3362 |
| Eco47I | GGWCC | 7 cut(s) | 23, 792, 958, 1088, 1250, 2819, 3063 |
| Eco52I | CGGCCG | 1 cut(s) | 2623 |
| Eco53kI | GAGCTC | 1 cut(s) | 1718 |
| Eco72I | CACGTG | 3 cut(s) | 1701, 3098, 3194 |
| Eco91I | GGTNACC | 1 cut(s) | 890 |
| EcoICRI | GAGCTC | 1 cut(s) | 1718 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 600, 3249 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1088, 1727 |
| EcoO65I | GGTNACC | 1 cut(s) | 890 |
| EcoT14I | CCWWGG | 3 cut(s) | 62, 601, 1203 |
| EcoT22I | ATGCAT | 2 cut(s) | 3292, 3351 |
| EcoT38I | GRGCYC | 1 cut(s) | 1720 |
| EgeI | GGCGCC | 1 cut(s) | 2090 |
| EheI | GGCGCC | 1 cut(s) | 2090 |
| ErhI | CCWWGG | 3 cut(s) | 62, 601, 1203 |
| FaqI | GGGAC | 9 cut(s) | 432, 805, 922, 2051, 2231, 2817, 2919, 2931, 3253 |
| FauI | CCCGC | 1 cut(s) | 270 |
| FblI | GTMKAC | 1 cut(s) | 1783 |
| FriOI | GRGCYC | 1 cut(s) | 1720 |
| FspBI | CTAG | 3 cut(s) | 939, 1311, 2739 |
| GlaI | GCGC | 3 cut(s) | 36, 640, 2090 |
| GsaI | CCCAGC | 3 cut(s) | 965, 1446, 2406 |
| GsuI | CTGGAG | 3 cut(s) | 2114, 2498, 3383 |
| HaeII | RGCGCY | 1 cut(s) | 2092 |
| HapII | CCGG | 7 cut(s) | 171, 745, 1118, 1779, 2380, 2504, 3133 |
| HgaI | GACGC | 1 cut(s) | 2196 |
| HhaI | GCGC | 3 cut(s) | 37, 641, 2091 |
| Hin1I | GRCGYC | 1 cut(s) | 2089 |
| Hin6I | GCGC | 3 cut(s) | 35, 639, 2089 |
| HinP1I | GCGC | 3 cut(s) | 35, 639, 2089 |
| HincII | GTYRAC | 3 cut(s) | 836, 1784, 2341 |
| HindII | GTYRAC | 3 cut(s) | 836, 1784, 2341 |
| HindIII | AAGCTT | 1 cut(s) | 1103 |
| HpaI | GTTAAC | 1 cut(s) | 2341 |
| HpaII | CCGG | 7 cut(s) | 171, 745, 1118, 1779, 2380, 2504, 3133 |
| HphI | GGTGA | 9 cut(s) | 884, 914, 1288, 1376, 1988, 2014, 2243, 2369, 2711 |
| Hpy188I | TCNGA | 5 cut(s) | 1295, 1599, 2261, 2437, 3087 |
| Hpy188III | TCNNGA | 9 cut(s) | 254, 1019, 1387, 1415, 1533, 1900, 2477, 2945, 3227 |
| HpyAV | CCTTC | 6 cut(s) | 61, 888, 1070, 1573, 2364, 2541 |
| HpyCH4III | ACNGT | 9 cut(s) | 977, 1037, 1235, 1383, 1612, 2052, 2858, 2882, 3152 |
| HpyCH4IV | ACGT | 5 cut(s) | 1700, 2176, 2908, 3097, 3193 |
| HpySE526I | ACGT | 5 cut(s) | 1700, 2176, 2908, 3097, 3193 |
| Hsp92I | GRCGYC | 1 cut(s) | 2089 |
| HspAI | GCGC | 3 cut(s) | 35, 639, 2089 |
| KasI | GGCGCC | 1 cut(s) | 2088 |
| KspAI | GTTAAC | 1 cut(s) | 2341 |
| KspI | CCGCGG | 1 cut(s) | 2764 |
| Kzo9I | GATC | 9 cut(s) | 43, 1295, 1747, 1855, 1978, 2100, 2108, 2164, 3217 |
| LguI | GCTCTTC | 1 cut(s) | 1497 |
| LweI | GCATC | 6 cut(s) | 438, 463, 496, 1460, 1545, 3299 |
| MabI | ACCWGGT | 1 cut(s) | 1177 |
| MaeI | CTAG | 3 cut(s) | 939, 1311, 2739 |
| MaeII | ACGT | 5 cut(s) | 1700, 2176, 2908, 3097, 3193 |
| MaeIII | GTNAC | 8 cut(s) | 358, 890, 1306, 1351, 1364, 2699, 3093, 3146 |
| MalI | GATC | 9 cut(s) | 45, 1297, 1749, 1857, 1980, 2102, 2110, 2166, 3219 |
| MboI | GATC | 9 cut(s) | 43, 1295, 1747, 1855, 1978, 2100, 2108, 2164, 3217 |
| MboII | GAAGA | 8 cut(s) | 773, 1409, 1484, 1562, 1819, 1973, 2378, 2400 |
| MfeI | CAATTG | 3 cut(s) | 413, 1485, 1515 |
| MflI | RGATCY | 4 cut(s) | 1295, 2100, 2108, 3217 |
| MhlI | GDGCHC | 3 cut(s) | 546, 1720, 2502 |
| MlsI | TGGCCA | 1 cut(s) | 1483 |
| MluNI | TGGCCA | 1 cut(s) | 1483 |
| Mly113I | GGCGCC | 1 cut(s) | 2089 |
| MlyI | GAGTC | 5 cut(s) | 520, 622, 3052, 3079, 3145 |
| MmeI | TCCRAC | 3 cut(s) | 982, 1273, 3065 |
| Mox20I | TGGCCA | 1 cut(s) | 1483 |
| Mph1103I | ATGCAT | 2 cut(s) | 3292, 3351 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2988 |
| MscI | TGGCCA | 1 cut(s) | 1483 |
| MseI | TTAA | 5 cut(s) | 1007, 1062, 1989, 2249, 2340 |
| MslI | CAYNNNNRTG | 4 cut(s) | 806, 930, 1188, 1477 |
| Msp20I | TGGCCA | 1 cut(s) | 1483 |
| MspA1I | CMGCKG | 5 cut(s) | 20, 1735, 2459, 2763, 3361 |
| MspI | CCGG | 7 cut(s) | 171, 745, 1118, 1779, 2380, 2504, 3133 |
| MunI | CAATTG | 3 cut(s) | 413, 1485, 1515 |
| Mva1269I | GAATGC | 2 cut(s) | 591, 1866 |
| MvnI | CGCG | 2 cut(s) | 35, 2763 |
| NarI | GGCGCC | 1 cut(s) | 2089 |
| NciI | CCSGG | 4 cut(s) | 171, 745, 1779, 2504 |
| NcoI | CCATGG | 1 cut(s) | 1203 |
| NdeII | GATC | 9 cut(s) | 43, 1295, 1747, 1855, 1978, 2100, 2108, 2164, 3217 |
| NlaIV | GGNNCC | 8 cut(s) | 110, 763, 793, 944, 960, 1626, 2090, 3240 |
| NmuCI | GTSAC | 5 cut(s) | 358, 890, 1364, 2699, 3093 |
| NsiI | ATGCAT | 2 cut(s) | 3292, 3351 |
| NspI | RCATGY | 1 cut(s) | 871 |
| NspV | TTCGAA | 2 cut(s) | 2992, 3200 |
| PaeI | GCATGC | 1 cut(s) | 871 |
| PagI | TCATGA | 2 cut(s) | 1018, 1386 |
| PaqCI | CACCTGC | 4 cut(s) | 370, 749, 903, 1964 |
| PceI | AGGCCT | 1 cut(s) | 3187 |
| PciSI | GCTCTTC | 1 cut(s) | 1497 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3052 |
| PctI | GAATGC | 2 cut(s) | 591, 1866 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2988 |
| PfeI | GAWTC | 6 cut(s) | 349, 778, 2576, 2615, 2934, 3230 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 239 |
| PleI | GAGTC | 5 cut(s) | 519, 622, 3051, 3078, 3144 |
| PluTI | GGCGCC | 1 cut(s) | 2092 |
| PmaCI | CACGTG | 3 cut(s) | 1701, 3098, 3194 |
| PmlI | CACGTG | 3 cut(s) | 1701, 3098, 3194 |
| PpsI | GAGTC | 5 cut(s) | 519, 622, 3051, 3078, 3144 |
| Ppu21I | YACGTR | 4 cut(s) | 1701, 2177, 3098, 3194 |
| PpuMI | RGGWCCY | 1 cut(s) | 1088 |
| Psp124BI | GAGCTC | 1 cut(s) | 1720 |
| Psp5II | RGGWCCY | 1 cut(s) | 1088 |
| PspCI | CACGTG | 3 cut(s) | 1701, 3098, 3194 |
| PspEI | GGTNACC | 1 cut(s) | 890 |
| PspFI | CCCAGC | 3 cut(s) | 961, 1442, 2402 |
| PspN4I | GGNNCC | 8 cut(s) | 110, 763, 793, 944, 960, 1626, 2090, 3240 |
| PspPPI | RGGWCCY | 1 cut(s) | 1088 |
| PstI | CTGCAG | 1 cut(s) | 900 |
| PstNI | CAGNNNCTG | 5 cut(s) | 565, 631, 911, 3329, 3361 |
| PsuI | RGATCY | 4 cut(s) | 1295, 2100, 2108, 3217 |
| PvuII | CAGCTG | 4 cut(s) | 20, 1735, 2459, 3361 |
| RsaI | GTAC | 6 cut(s) | 825, 1232, 1842, 1937, 2423, 2876 |
| RsaNI | GTAC | 6 cut(s) | 824, 1231, 1841, 1936, 2422, 2875 |
| RseI | CAYNNNNRTG | 4 cut(s) | 806, 930, 1188, 1477 |
| SacI | GAGCTC | 1 cut(s) | 1720 |
| SacII | CCGCGG | 1 cut(s) | 2764 |
| SalI | GTCGAC | 1 cut(s) | 1782 |
| SapI | GCTCTTC | 1 cut(s) | 1497 |
| SaqAI | TTAA | 5 cut(s) | 1007, 1062, 1989, 2249, 2340 |
| Sau3AI | GATC | 9 cut(s) | 43, 1295, 1747, 1855, 1978, 2100, 2108, 2164, 3217 |
| SchI | GAGTC | 5 cut(s) | 520, 622, 3052, 3079, 3145 |
| SduI | GDGCHC | 3 cut(s) | 546, 1720, 2502 |
| SexAI | ACCWGGT | 1 cut(s) | 1177 |
| SfaNI | GCATC | 6 cut(s) | 438, 463, 496, 1460, 1545, 3299 |
| SfcI | CTRYAG | 2 cut(s) | 896, 2968 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 2733 |
| SfoI | GGCGCC | 1 cut(s) | 2090 |
| Sfr303I | CCGCGG | 1 cut(s) | 2764 |
| SfuI | TTCGAA | 2 cut(s) | 2992, 3200 |
| SgrBI | CCGCGG | 1 cut(s) | 2764 |
| SinI | GGWCC | 7 cut(s) | 23, 792, 958, 1088, 1250, 2819, 3063 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 806, 930, 1188, 1477 |
| SmlI | CTYRAG | 2 cut(s) | 387, 2226 |
| SmoI | CTYRAG | 2 cut(s) | 387, 2226 |
| SpeI | ACTAGT | 1 cut(s) | 1310 |
| SphI | GCATGC | 1 cut(s) | 871 |
| SseBI | AGGCCT | 1 cut(s) | 3187 |
| SsiI | CCGC | 6 cut(s) | 263, 2622, 2728, 2761, 2763, 3034 |
| SspDI | GGCGCC | 1 cut(s) | 2088 |
| SspI | AATATT | 2 cut(s) | 2008, 2280 |
| SspMI | CTAG | 3 cut(s) | 939, 1311, 2739 |
| SstI | GAGCTC | 1 cut(s) | 1720 |
| StuI | AGGCCT | 1 cut(s) | 3187 |
| StyI | CCWWGG | 3 cut(s) | 62, 601, 1203 |
| TaaI | ACNGT | 9 cut(s) | 977, 1037, 1235, 1383, 1612, 2052, 2858, 2882, 3152 |
| TaiI | ACGT | 5 cut(s) | 1703, 2179, 2911, 3100, 3196 |
| TaqI | TCGA | 6 cut(s) | 1783, 1858, 2937, 2992, 3157, 3200 |
| TatI | WGTACW | 4 cut(s) | 823, 1230, 1840, 1935 |
| TauI | GCSGC | 4 cut(s) | 2625, 2730, 2763, 3036 |
| TfiI | GAWTC | 6 cut(s) | 349, 778, 2576, 2615, 2934, 3230 |
| Tru1I | TTAA | 5 cut(s) | 1007, 1062, 1989, 2249, 2340 |
| Tru9I | TTAA | 5 cut(s) | 1007, 1062, 1989, 2249, 2340 |
| TscAI | CASTG | 8 cut(s) | 660, 1195, 1408, 1945, 2020, 2296, 2737, 3330 |
| TseFI | GTSAC | 5 cut(s) | 358, 890, 1364, 2699, 3093 |
| Tsp45I | GTSAC | 5 cut(s) | 358, 890, 1364, 2699, 3093 |
| TspDTI | ATGAA | 9 cut(s) | 150, 362, 1035, 1089, 1362, 1375, 1555, 1820, 2201 |
| TspGWI | ACGGA | 1 cut(s) | 1880 |
| TspRI | CASTG | 8 cut(s) | 660, 1195, 1408, 1945, 2020, 2296, 2737, 3330 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 239 |
| VneI | GTGCAC | 1 cut(s) | 542 |
| VpaK11BI | GGWCC | 7 cut(s) | 23, 792, 958, 1088, 1250, 2819, 3063 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 600, 3249 |
| XapI | RAATTY | 2 cut(s) | 1670, 3203 |
| XceI | RCATGY | 1 cut(s) | 871 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 199, 848, 2006 |
| XmiI | GTMKAC | 1 cut(s) | 1783 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2988 |
| XspI | CTAG | 3 cut(s) | 939, 1311, 2739 |
| Zsp2I | ATGCAT | 2 cut(s) | 3292, 3351 |