Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0008446

Physical Location & Seq

Genomic Coordinates Forward (+)

8741120 .. 8742599

Gene Structure 1480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g12540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGCAACCGAACGGAGTGATGCCTCAGGATGGGCAGCAGATAACACAAGCTCCACAACAGCAGGGGTCGCAAATAAACCAGTATTCTCAACCGCATGGACAGATAATGGCACAACAGCTGAATCCAACATCATATGCTCAACAGCAGGGATCACAAATGGCTCAACCTGGACATCAACAGAGTTCACAAGTGGGACAGGCCATGCAACATCATGGGCATATGATGCAGCATCCGGGTCAGCAAATGCCTCAGCAACTGGGGCAACACACACCACAGAGCCACGGGTCACAAATGCATCAGTTTGCACATCAGCAGATGCATTATATCCCTTATCAGCAAAGCATTCCTCCCCAAGGGCAGCAAAGTTCACAACAGCAATCTATGCATAGTGCACAAGGGCAACCACTGGCAAATCAACAAGAATATAAACCTGCATTCTCTCAGAGGGAGGAAGATGATTTTCAACAAAGAAATCAAATTGGTGTTTCTCCATCTCGATTTCAACCTGCGGGTGCCTCATCTGTGCAGAATCTTCCTACTGGGACCAATCCAGTACAAATGCCACAGAGGTCTGTTCATCAAGGGCCACCCCAACAATTTGGCGGCCCTATAGGAAACATGCAACACCCTTCCTCTTTTGGTCACTTGCAGCAACCTGGGGCTGATTTGCCTCACAATCAACATGGTTCTAGGTTCCAAAATCAAATGGACCCGGCAATGATACGTGGTCAGCAGTCAAATGTGCCTCCTGTAGGATTAAGAATGGGTCATGAAGATAATTTCCACGGTAGAGGTGGAAATGACTATTACTTCAATAGTAATAAAGAAGGGCCACCAGGTCCTCAGCAACCCAAACTTGCATCTATTCCGATTGCAAGAAGTCAGCAGGAGATGAGTATGAGTGGTGGTCCTCCATTTCAAAATGCTACACCTGGTCGTGCCAATGCACTGAATACCATGCCAGGTCCCATGCATAACGCGTACAGTCAAGCAACAGGTGGTCCACCTTTCCCAAATAACTCTTTGGTGAAGCCCCCTTATGCCGGACCTACAAGTGTTACTAGTCTTTCACCTGTTGAAGTTTATCGGCAACAACATGAAGTTACTGCATCGAGGGTGACAATGTTCCTGCACCGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 ko05202 ko05205 map03040 map05202 map05205

Pfam Domains

Protein Families

DEAD Helicase_C WW

Protein Analysis

381

Amino Acids

41.69

Weight (kDa)

8.9

Isoelectric Point (pI)

74.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06480 AT3G06480
fragaria_vesca	FvH4_4g21040
malus_domestica	MD13G1145900.v1.1 MD16G1139800.v1.1 MD16G1139900.v1.1
prunus_persica	Prupe.1G109600_v2.0.a1
pyrus_communis	pycom13g12540 pycom16g12400
rosa_chinensis	RchiOBHm_Chr2g0174651 RchiOBHm_Chr4g0426571
rosa_laevigata	RLG00000007289
rosa_multiflora	Rmu_co8268839.1_g000001 Rmu_sc0001821.1_g000009 Rmu_sc0007189.1_g000006
rosa_roxburghii	Rroxscaffold_5G00368580
rosa_rugosa	Rorug04G0213500
rosa_samantha	Rh4AG268700 Rh4BG275000 Rh4CG289300 Rh4DG271800
rosa_wichuraiana	Rw2G054030 Rw4G023310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	439, 514
AccB1I	GGYRCC	1 cut(s)	512
AccII	CGCG	1 cut(s)	980
AciI	CCGC	3 cut(s)	92, 509, 603
AclWI	GGATC	1 cut(s)	157
AfaI	GTAC	2 cut(s)	555, 983
AfiI	CCNNNNNNNGG	4 cut(s)	29, 353, 752, 1043
AflIII	ACRYGT	1 cut(s)	978
AgsI	TTSAA	5 cut(s)	464, 503, 814, 920, 1079
AhlI	ACTAGT	1 cut(s)	1061
AjnI	CCWGG	5 cut(s)	166, 655, 835, 931, 961
AluBI	AGCT	2 cut(s)	50, 118
AluI	AGCT	2 cut(s)	50, 118
Alw21I	GWGCWC	1 cut(s)	394
Alw44I	GTGCAC	1 cut(s)	390
AlwI	GGATC	1 cut(s)	157
AlwNI	CAGNNNCTG	1 cut(s)	256
AoxI	GGCC	4 cut(s)	198, 584, 604, 830
ApaLI	GTGCAC	1 cut(s)	390
ApeKI	GCWGC	4 cut(s)	34, 226, 358, 649
AsuC2I	CCSGG	2 cut(s)	234, 713
AsuHPI	GGTGA	3 cut(s)	1039, 1062, 1129
AvaII	GGWCC	7 cut(s)	543, 709, 839, 908, 965, 1001, 1046
AxyI	CCTNAGG	1 cut(s)	24
BaeGI	GKGCMC	1 cut(s)	394
BanI	GGYRCC	1 cut(s)	512
Bbv12I	GWGCWC	1 cut(s)	394
BbvCI	CCTCAGC	2 cut(s)	249, 843
BbvI	GCAGC	4 cut(s)	46, 238, 370, 661
BccI	CCATC	2 cut(s)	23, 499
BciT130I	CCWGG	5 cut(s)	168, 657, 837, 933, 963
BcnI	CCSGG	2 cut(s)	234, 713
BcuI	ACTAGT	1 cut(s)	1061
BfaI	CTAG	2 cut(s)	690, 1062
BfmI	CTRYAG	2 cut(s)	609, 750
BfuAI	ACCTGC	2 cut(s)	439, 514
BisI	GCNGC	5 cut(s)	35, 227, 359, 604, 650
BlsI	GCNGC	5 cut(s)	36, 228, 360, 605, 651
Bme1390I	CCNGG	7 cut(s)	168, 234, 657, 713, 837, 933, 963
Bme18I	GGWCC	7 cut(s)	543, 709, 839, 908, 965, 1001, 1046
BmiI	GGNNCC	5 cut(s)	514, 544, 695, 711, 967
BmrFI	CCNGG	7 cut(s)	168, 234, 657, 713, 837, 933, 963
BmrI	ACTGGG	2 cut(s)	266, 549
BmsI	GCATC	7 cut(s)	9, 213, 238, 304, 306, 869, 1118
BmuI	ACTGGG	2 cut(s)	266, 549
Bpu10I	CCTNAGC	2 cut(s)	249, 843
BpuMI	CCSGG	2 cut(s)	234, 713
BsaAI	YACGTR	1 cut(s)	725
BsaJI	CCNNGG	4 cut(s)	280, 352, 656, 784
BsaXI	ACNNNNNCTCC	2 cut(s)	34, 64
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 353, 752, 1043
Bse1I	ACTGG	5 cut(s)	79, 261, 411, 544, 551
Bse21I	CCTNAGG	1 cut(s)	24
Bse3DI	GCAATG	1 cut(s)	723
BseBI	CCWGG	5 cut(s)	168, 657, 837, 933, 963
BseDI	CCNNGG	4 cut(s)	280, 352, 656, 784
BseGI	GGATG	2 cut(s)	34, 229
BseLI	CCNNNNNNNGG	4 cut(s)	29, 353, 752, 1043
BseMI	GCAATG	1 cut(s)	723
BseMII	CTCAG	4 cut(s)	38, 263, 455, 857
BseNI	ACTGG	5 cut(s)	79, 261, 411, 544, 551
BseSI	GKGCMC	1 cut(s)	394
BseXI	GCAGC	4 cut(s)	46, 238, 370, 661
BsgI	GTGCAG	2 cut(s)	545, 1115
Bsh1236I	CGCG	1 cut(s)	980
BshFI	GGCC	4 cut(s)	200, 586, 606, 832
BshNI	GGYRCC	1 cut(s)	512
BsiHKAI	GWGCWC	1 cut(s)	394
BsiSI	CCGG	3 cut(s)	233, 713, 1044
BslFI	GGGAC	3 cut(s)	207, 556, 951
BslI	CCNNNNNNNGG	4 cut(s)	29, 353, 752, 1043
BsmFI	GGGAC	3 cut(s)	207, 556, 951
BsmI	GAATGC	2 cut(s)	342, 434
BsnI	GGCC	4 cut(s)	200, 586, 606, 832
Bsp1286I	GDGCHC	1 cut(s)	394
Bsp143I	GATC	1 cut(s)	149
BspACI	CCGC	3 cut(s)	92, 509, 603
BspANI	GGCC	4 cut(s)	200, 586, 606, 832
BspCNI	CTCAG	4 cut(s)	37, 262, 454, 856
BspFNI	CGCG	1 cut(s)	980
BspHI	TCATGA	2 cut(s)	769, 1139
BspLI	GGNNCC	5 cut(s)	514, 544, 695, 711, 967
BspMI	ACCTGC	2 cut(s)	439, 514
BspPI	GGATC	1 cut(s)	157
BspT107I	GGYRCC	1 cut(s)	512
BsrDI	GCAATG	1 cut(s)	723
BsrI	ACTGG	5 cut(s)	79, 261, 411, 544, 551
BssECI	CCNNGG	4 cut(s)	280, 352, 656, 784
BssMI	GATC	1 cut(s)	149
BssT1I	CCWWGG	1 cut(s)	352
Bst2UI	CCWGG	5 cut(s)	168, 657, 837, 933, 963
Bst4CI	ACNGT	3 cut(s)	788, 986, 1136
BstAPI	GCANNNNNTGC	2 cut(s)	223, 382
BstBAI	YACGTR	1 cut(s)	725
BstDEI	CTNAG	4 cut(s)	24, 249, 441, 843
BstDSI	CCRYGG	2 cut(s)	280, 784
BstENI	CCTNNNNNAGG	2 cut(s)	351, 750
BstF5I	GGATG	2 cut(s)	34, 229
BstFNI	CGCG	1 cut(s)	980
BstKTI	GATC	1 cut(s)	152
BstMBI	GATC	1 cut(s)	149
BstMWI	GCNNNNNNNGC	4 cut(s)	67, 223, 259, 382
BstNI	CCWGG	5 cut(s)	168, 657, 837, 933, 963
BstNSI	RCATGY	1 cut(s)	622
BstSCI	CCNGG	7 cut(s)	166, 232, 655, 711, 835, 931, 961
BstSFI	CTRYAG	2 cut(s)	609, 750
BstSLI	GKGCMC	1 cut(s)	394
BstUI	CGCG	1 cut(s)	980
BstV1I	GCAGC	4 cut(s)	46, 238, 370, 661
BstXI	CCANNNNNNTGG	1 cut(s)	599
Bsu36I	CCTNAGG	1 cut(s)	24
BsuRI	GGCC	4 cut(s)	200, 586, 606, 832
BtgI	CCRYGG	2 cut(s)	280, 784
BtsCI	GGATG	2 cut(s)	34, 229
BtsIMutI	CAGTG	2 cut(s)	404, 947
BveI	ACCTGC	2 cut(s)	439, 514
CaiI	CAGNNNCTG	1 cut(s)	256
CciI	TCATGA	2 cut(s)	769, 1139
CsiI	ACCWGGT	2 cut(s)	835, 931
Csp6I	GTAC	2 cut(s)	554, 982
CviQI	GTAC	2 cut(s)	554, 982
DdeI	CTNAG	4 cut(s)	24, 249, 441, 843
DpnI	GATC	1 cut(s)	151
DpnII	GATC	1 cut(s)	149
Eco130I	CCWWGG	1 cut(s)	352
Eco47I	GGWCC	7 cut(s)	543, 709, 839, 908, 965, 1001, 1046
Eco81I	CCTNAGG	1 cut(s)	24
EcoNI	CCTNNNNNAGG	2 cut(s)	351, 750
EcoO109I	RGGNCCY	2 cut(s)	839, 965
EcoRII	CCWGG	5 cut(s)	166, 655, 835, 931, 961
EcoT14I	CCWWGG	1 cut(s)	352
EcoT22I	ATGCAT	4 cut(s)	297, 321, 387, 975
ErhI	CCWWGG	1 cut(s)	352
FaqI	GGGAC	3 cut(s)	207, 556, 951
FauI	CCCGC	1 cut(s)	502
FauNDI	CATATG	2 cut(s)	133, 219
Fnu4HI	GCNGC	5 cut(s)	35, 227, 359, 604, 650
FokI	GGATG	2 cut(s)	41, 216
Fsp4HI	GCNGC	5 cut(s)	35, 227, 359, 604, 650
FspBI	CTAG	2 cut(s)	690, 1062
GluI	GCNGC	5 cut(s)	35, 227, 359, 604, 650
HaeIII	GGCC	4 cut(s)	200, 586, 606, 832
HapII	CCGG	3 cut(s)	233, 713, 1044
HinfI	GANTC	2 cut(s)	121, 529
HpaII	CCGG	3 cut(s)	233, 713, 1044
HphI	GGTGA	3 cut(s)	1039, 1062, 1129
Hpy166II	GTNNAC	4 cut(s)	185, 368, 392, 1004
Hpy188I	TCNGA	2 cut(s)	444, 870
Hpy188III	TCNNGA	4 cut(s)	26, 495, 770, 1140
Hpy8I	GTNNAC	4 cut(s)	185, 368, 392, 1004
HpyAV	CCTTC	2 cut(s)	639, 821
HpyCH4III	ACNGT	3 cut(s)	788, 986, 1136
HpyCH4IV	ACGT	1 cut(s)	724
HpyF10VI	GCNNNNNNNGC	4 cut(s)	67, 223, 259, 382
HpyF3I	CTNAG	4 cut(s)	24, 249, 441, 843
HpySE526I	ACGT	1 cut(s)	724
Kzo9I	GATC	1 cut(s)	149
LmnI	GCTCC	1 cut(s)	55
Lsp1109I	GCAGC	4 cut(s)	46, 238, 370, 661
LweI	GCATC	7 cut(s)	9, 213, 238, 304, 306, 869, 1118
MabI	ACCWGGT	2 cut(s)	835, 931
MaeI	CTAG	2 cut(s)	690, 1062
MaeII	ACGT	1 cut(s)	724
MaeIII	GTNAC	5 cut(s)	285, 641, 1057, 1102, 1117
MalI	GATC	1 cut(s)	151
MboI	GATC	1 cut(s)	149
MboII	GAAGA	3 cut(s)	464, 524, 785
MhlI	GDGCHC	1 cut(s)	394
MluCI	AATT	3 cut(s)	477, 596, 778
MluI	ACGCGT	1 cut(s)	978
MmeI	TCCRAC	1 cut(s)	149
Mph1103I	ATGCAT	4 cut(s)	297, 321, 387, 975
MseI	TTAA	1 cut(s)	758
MspA1I	CMGCKG	1 cut(s)	118
MspI	CCGG	3 cut(s)	233, 713, 1044
MspR9I	CCNGG	7 cut(s)	168, 234, 657, 713, 837, 933, 963
Mva1269I	GAATGC	2 cut(s)	342, 434
MvaI	CCWGG	5 cut(s)	168, 657, 837, 933, 963
MvnI	CGCG	1 cut(s)	980
MwoI	GCNNNNNNNGC	4 cut(s)	67, 223, 259, 382
NciI	CCSGG	2 cut(s)	234, 713
NdeI	CATATG	2 cut(s)	133, 219
NdeII	GATC	1 cut(s)	149
NlaIV	GGNNCC	5 cut(s)	514, 544, 695, 711, 967
NmuCI	GTSAC	3 cut(s)	285, 641, 1117
NsiI	ATGCAT	4 cut(s)	297, 321, 387, 975
NspI	RCATGY	1 cut(s)	622
PagI	TCATGA	2 cut(s)	769, 1139
PctI	GAATGC	2 cut(s)	342, 434
PfeI	GAWTC	2 cut(s)	121, 529
PkrI	GCNGC	5 cut(s)	36, 228, 360, 605, 651
Ppu21I	YACGTR	1 cut(s)	725
PpuMI	RGGWCCY	2 cut(s)	839, 965
Psp5II	RGGWCCY	2 cut(s)	839, 965
Psp6I	CCWGG	5 cut(s)	166, 655, 835, 931, 961
PspGI	CCWGG	5 cut(s)	166, 655, 835, 931, 961
PspN4I	GGNNCC	5 cut(s)	514, 544, 695, 711, 967
PspPPI	RGGWCCY	2 cut(s)	839, 965
PstNI	CAGNNNCTG	1 cut(s)	256
PvuII	CAGCTG	1 cut(s)	118
RsaI	GTAC	2 cut(s)	555, 983
RsaNI	GTAC	2 cut(s)	554, 982
SaqAI	TTAA	1 cut(s)	758
SatI	GCNGC	5 cut(s)	35, 227, 359, 604, 650
Sau3AI	GATC	1 cut(s)	149
ScrFI	CCNGG	7 cut(s)	168, 234, 657, 713, 837, 933, 963
SduI	GDGCHC	1 cut(s)	394
SexAI	ACCWGGT	2 cut(s)	835, 931
SfaNI	GCATC	7 cut(s)	9, 213, 238, 304, 306, 869, 1118
SfcI	CTRYAG	2 cut(s)	609, 750
SinI	GGWCC	7 cut(s)	543, 709, 839, 908, 965, 1001, 1046
SpeI	ACTAGT	1 cut(s)	1061
Sse9I	AATT	3 cut(s)	477, 596, 778
SsiI	CCGC	3 cut(s)	92, 509, 603
SspMI	CTAG	2 cut(s)	690, 1062
StyD4I	CCNGG	7 cut(s)	166, 232, 655, 711, 835, 931, 961
StyI	CCWWGG	1 cut(s)	352
TaaI	ACNGT	3 cut(s)	788, 986, 1136
TaiI	ACGT	1 cut(s)	727
TaqI	TCGA	2 cut(s)	496, 1112
TasI	AATT	3 cut(s)	477, 596, 778
TatI	WGTACW	1 cut(s)	553
TauI	GCSGC	1 cut(s)	606
TfiI	GAWTC	2 cut(s)	121, 529
Tru1I	TTAA	1 cut(s)	758
Tru9I	TTAA	1 cut(s)	758
TscAI	CASTG	2 cut(s)	411, 954
TseFI	GTSAC	3 cut(s)	285, 641, 1117
TseI	GCWGC	4 cut(s)	34, 226, 358, 649
Tsp45I	GTSAC	3 cut(s)	285, 641, 1117
TspDTI	ATGAA	4 cut(s)	566, 786, 1113, 1128
TspGWI	ACGGA	1 cut(s)	27
TspRI	CASTG	2 cut(s)	411, 954
VneI	GTGCAC	1 cut(s)	390
VpaK11BI	GGWCC	7 cut(s)	543, 709, 839, 908, 965, 1001, 1046
XagI	CCTNNNNNAGG	2 cut(s)	351, 750
XceI	RCATGY	1 cut(s)	622
XcmI	CCANNNNNNNNNTGG	1 cut(s)	791
XspI	CTAG	2 cut(s)	690, 1062
Zsp2I	ATGCAT	4 cut(s)	297, 321, 387, 975

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.