Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0008446

Physical Location & Seq

Genomic Coordinates Forward (+)

81754853 .. 81755829

Gene Structure 977 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G054030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGCAACAGCCTTCTTCTTTTGGCCACCAGCAACAATCAGGAACTGACTTGGTGCACCATCAATTCGGTTCTAGGTTTCAAAATCAAATGGACCCAGCAATCATTCATAGCCAGCAGCCTAATATGCCTCCTATTGGTTTAAGGAGGAGTCATGAAAATAATTTCCAGGGTAGAGTTGGAAATGAATATTACTTAAATGGTAACAATGAAGGGCCAACAGCTACTCAGCAGCCTAAGCTTGCAACTATCCCAATGACAATCGCAAGAAGTCAGCAGGAGATGGGAATCAGTAGTGTCCCATTTCAAAATGCTACACCTAGTCAGAGCATGCATAACATGTACAGTCATGCAATAGGTGGTCCACCATTCTCAAACAATGCTCTGGTGAAGCCTTCATACGTAGGACCAACAAGTGTTCCTAGCCTCTCACCAGTTCAAGCTTATCTTCAACAACATGAAGTTACTGCAACGGGTGGTAATGTTCCTGCACCGTTCATGACATTTGAAGATACTGGATTTCCGCCAGAGATATTGAGAGACATATATTCTGCTGGCTTTGCATCTCCTACACCAATTCAAGCACAAACATGGCCTATTGCTCTTCAGAGTAGGGATATAGTAGCTATTGCGAAAACCGGATCTGGAAAAATATTGGGTTATTTGATGCCTGCCTTCATTCTTCTTAGACAGTGCCGTAATAATTCTCAGAATGGGCAACAGTGTTGGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 ko05202 ko05205 map03040 map05202 map05205

Pfam Domains

Protein Families

DEAD Helicase_C WW

Protein Analysis

243

Amino Acids

26.64

Weight (kDa)

7.87

Isoelectric Point (pI)

66.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	190 - 236	2.5e-07	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06480 AT3G06480
fragaria_vesca	FvH4_4g21040
malus_domestica	MD13G1145900.v1.1 MD16G1139800.v1.1 MD16G1139900.v1.1
prunus_persica	Prupe.1G109600_v2.0.a1
pyrus_communis	pycom13g12540 pycom16g12400
rosa_chinensis	RchiOBHm_Chr2g0174651 RchiOBHm_Chr4g0426571
rosa_laevigata	RLG00000007289
rosa_multiflora	Rmu_co8268839.1_g000001 Rmu_sc0001821.1_g000009 Rmu_sc0007189.1_g000006
rosa_roxburghii	Rroxscaffold_5G00368580
rosa_rugosa	Rorug04G0213500
rosa_samantha	Rh4AG268700 Rh4BG275000 Rh4CG289300 Rh4DG271800
rosa_wichuraiana	Rw2G054030 Rw4G023310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	521
AclWI	GGATC	1 cut(s)	646
AcoI	YGGCCR	1 cut(s)	22
AcuI	CTGAAG	1 cut(s)	587
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	1 cut(s)	134
AflIII	ACRYGT	1 cut(s)	336
AgsI	TTSAA	6 cut(s)	80, 305, 437, 449, 506, 578
AjnI	CCWGG	1 cut(s)	165
AluBI	AGCT	4 cut(s)	221, 238, 440, 623
AluI	AGCT	4 cut(s)	221, 238, 440, 623
Alw21I	GWGCWC	1 cut(s)	57
Alw26I	GTCTC	1 cut(s)	531
Alw44I	GTGCAC	1 cut(s)	53
AlwI	GGATC	1 cut(s)	646
AlwNI	CAGNNNCTG	1 cut(s)	44
AoxI	GGCC	3 cut(s)	22, 212, 590
ApaLI	GTGCAC	1 cut(s)	53
ApeKI	GCWGC	2 cut(s)	115, 229
AspS9I	GGNCC	4 cut(s)	91, 212, 359, 404
AsuHPI	GGTGA	2 cut(s)	397, 420
AvaII	GGWCC	3 cut(s)	91, 359, 404
BaeGI	GKGCMC	1 cut(s)	57
BalI	TGGCCA	1 cut(s)	24
BarI	GAAGNNNNNNTAC	2 cut(s)	380, 412
Bbv12I	GWGCWC	1 cut(s)	57
BbvI	GCAGC	2 cut(s)	127, 241
BccI	CCATC	2 cut(s)	66, 274
BceAI	ACGGC	1 cut(s)	678
BciT130I	CCWGG	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	531
BfaI	CTAG	4 cut(s)	72, 318, 420, 730
BisI	GCNGC	2 cut(s)	116, 230
BlsI	GCNGC	2 cut(s)	117, 231
Bme1390I	CCNGG	1 cut(s)	167
Bme18I	GGWCC	3 cut(s)	91, 359, 404
BmgT120I	GGNCC	4 cut(s)	91, 212, 359, 404
BmiI	GGNNCC	1 cut(s)	93
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	2 cut(s)	569, 654
Bpu10I	CCTNAGC	1 cut(s)	234
BsaAI	YACGTR	1 cut(s)	400
BsaBI	GATNNNNATC	1 cut(s)	284
BsaJI	CCNNGG	1 cut(s)	166
BsaWI	WCCGGW	1 cut(s)	635
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
Bse1I	ACTGG	2 cut(s)	431, 517
Bse8I	GATNNNNATC	1 cut(s)	284
BseBI	CCWGG	1 cut(s)	167
BseDI	CCNNGG	1 cut(s)	166
BseJI	GATNNNNATC	1 cut(s)	284
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseMII	CTCAG	2 cut(s)	239, 719
BseNI	ACTGG	2 cut(s)	431, 517
BseRI	GAGGAG	1 cut(s)	160
BseSI	GKGCMC	1 cut(s)	57
BseXI	GCAGC	2 cut(s)	127, 241
BseYI	CCCAGC	1 cut(s)	94
BsgI	GTGCAG	1 cut(s)	471
BshFI	GGCC	3 cut(s)	24, 214, 592
BsiHKAI	GWGCWC	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	636
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	134
BsmAI	GTCTC	1 cut(s)	531
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	3 cut(s)	24, 214, 592
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp1407I	TGTACA	1 cut(s)	339
Bsp143I	GATC	1 cut(s)	638
BspACI	CCGC	1 cut(s)	521
BspANI	GGCC	3 cut(s)	24, 214, 592
BspCNI	CTCAG	2 cut(s)	238, 718
BspHI	TCATGA	2 cut(s)	151, 495
BspLI	GGNNCC	1 cut(s)	93
BspPI	GGATC	1 cut(s)	646
BspQI	GCTCTTC	1 cut(s)	606
BsrGI	TGTACA	1 cut(s)	339
BsrI	ACTGG	2 cut(s)	431, 517
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	1 cut(s)	638
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	4 cut(s)	344, 492, 690, 720
Bst6I	CTCTTC	1 cut(s)	606
BstAUI	TGTACA	1 cut(s)	339
BstBAI	YACGTR	1 cut(s)	400
BstC8I	GCNNGC	5 cut(s)	113, 240, 329, 553, 669
BstDEI	CTNAG	4 cut(s)	225, 234, 683, 705
BstKTI	GATC	1 cut(s)	641
BstMAI	GTCTC	1 cut(s)	531
BstMBI	GATC	1 cut(s)	638
BstMWI	GCNNNNNNNGC	3 cut(s)	124, 235, 557
BstNI	CCWGG	1 cut(s)	167
BstNSI	RCATGY	2 cut(s)	331, 340
BstSCI	CCNGG	1 cut(s)	165
BstSLI	GKGCMC	1 cut(s)	57
BstSNI	TACGTA	1 cut(s)	400
BstV1I	GCAGC	2 cut(s)	127, 241
BstX2I	RGATCY	1 cut(s)	638
BstYI	RGATCY	1 cut(s)	638
BsuRI	GGCC	3 cut(s)	24, 214, 592
BtsIMutI	CAGTG	2 cut(s)	695, 725
Cac8I	GCNNGC	5 cut(s)	113, 240, 329, 553, 669
CaiI	CAGNNNCTG	1 cut(s)	44
CciI	TCATGA	2 cut(s)	151, 495
Cfr13I	GGNCC	4 cut(s)	91, 212, 359, 404
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	7 cut(s)	152, 328, 337, 347, 455, 496, 588
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	4 cut(s)	225, 234, 683, 705
DpnI	GATC	1 cut(s)	640
DpnII	GATC	1 cut(s)	638
EaeI	YGGCCR	1 cut(s)	22
Eam1104I	CTCTTC	1 cut(s)	606
EarI	CTCTTC	1 cut(s)	606
EciI	GGCGGA	1 cut(s)	510
Eco105I	TACGTA	1 cut(s)	400
Eco47I	GGWCC	3 cut(s)	91, 359, 404
Eco57I	CTGAAG	1 cut(s)	587
EcoRII	CCWGG	1 cut(s)	165
EcoT22I	ATGCAT	1 cut(s)	333
FaeI	CATG	7 cut(s)	155, 331, 340, 350, 458, 499, 591
FalI	AAGNNNNNCTT	2 cut(s)	429, 461
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	7 cut(s)	151, 327, 336, 346, 454, 495, 587
Fnu4HI	GCNGC	2 cut(s)	116, 230
Fsp4HI	GCNGC	2 cut(s)	116, 230
FspBI	CTAG	4 cut(s)	72, 318, 420, 730
GluI	GCNGC	2 cut(s)	116, 230
GsaI	CCCAGC	1 cut(s)	98
HaeIII	GGCC	3 cut(s)	24, 214, 592
HapII	CCGG	1 cut(s)	636
Hin1II	CATG	7 cut(s)	155, 331, 340, 350, 458, 499, 591
HindIII	AAGCTT	2 cut(s)	236, 438
HinfI	GANTC	2 cut(s)	148, 285
HpaII	CCGG	1 cut(s)	636
HphI	GGTGA	2 cut(s)	397, 420
Hpy166II	GTNNAC	2 cut(s)	55, 362
Hpy188I	TCNGA	3 cut(s)	324, 606, 708
Hpy188III	TCNNGA	4 cut(s)	39, 152, 496, 642
Hpy8I	GTNNAC	2 cut(s)	55, 362
HpyAV	CCTTC	4 cut(s)	21, 203, 402, 682
HpyCH4III	ACNGT	4 cut(s)	344, 492, 690, 720
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	8 cut(s)	4, 55, 242, 331, 350, 467, 488, 560
HpyF10VI	GCNNNNNNNGC	3 cut(s)	124, 235, 557
HpyF3I	CTNAG	4 cut(s)	225, 234, 683, 705
HpySE526I	ACGT	1 cut(s)	399
Hsp92II	CATG	7 cut(s)	155, 331, 340, 350, 458, 499, 591
Kzo9I	GATC	1 cut(s)	638
LguI	GCTCTTC	1 cut(s)	606
Lsp1109I	GCAGC	2 cut(s)	127, 241
LweI	GCATC	2 cut(s)	569, 654
MaeI	CTAG	4 cut(s)	72, 318, 420, 730
MaeII	ACGT	1 cut(s)	399
MaeIII	GTNAC	2 cut(s)	200, 460
MalI	GATC	1 cut(s)	640
MboI	GATC	1 cut(s)	638
MboII	GAAGA	5 cut(s)	6, 437, 518, 593, 671
MflI	RGATCY	1 cut(s)	638
MhlI	GDGCHC	1 cut(s)	57
MlsI	TGGCCA	1 cut(s)	24
MluCI	AATT	4 cut(s)	62, 160, 573, 700
MluNI	TGGCCA	1 cut(s)	24
MlyI	GAGTC	1 cut(s)	157
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	3 cut(s)	138, 138, 434
Mox20I	TGGCCA	1 cut(s)	24
Mph1103I	ATGCAT	1 cut(s)	333
MscI	TGGCCA	1 cut(s)	24
MseI	TTAA	2 cut(s)	140, 194
MslI	CAYNNNNRTG	1 cut(s)	586
Msp20I	TGGCCA	1 cut(s)	24
MspI	CCGG	1 cut(s)	636
MspR9I	CCNGG	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	3 cut(s)	124, 235, 557
NdeII	GATC	1 cut(s)	638
NlaIII	CATG	7 cut(s)	155, 331, 340, 350, 458, 499, 591
NlaIV	GGNNCC	1 cut(s)	93
NsiI	ATGCAT	1 cut(s)	333
NspI	RCATGY	2 cut(s)	331, 340
PaeI	GCATGC	1 cut(s)	331
PagI	TCATGA	2 cut(s)	151, 495
PciI	ACATGT	1 cut(s)	336
PciSI	GCTCTTC	1 cut(s)	606
PfeI	GAWTC	1 cut(s)	285
PkrI	GCNGC	2 cut(s)	117, 231
PleI	GAGTC	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	156
Ppu21I	YACGTR	1 cut(s)	400
PscI	ACATGT	1 cut(s)	336
Psp6I	CCWGG	1 cut(s)	165
PspFI	CCCAGC	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	93
PspPI	GGNCC	4 cut(s)	91, 212, 359, 404
PstNI	CAGNNNCTG	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	638
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
RseI	CAYNNNNRTG	1 cut(s)	586
SapI	GCTCTTC	1 cut(s)	606
SaqAI	TTAA	2 cut(s)	140, 194
SatI	GCNGC	2 cut(s)	116, 230
Sau3AI	GATC	1 cut(s)	638
Sau96I	GGNCC	4 cut(s)	91, 212, 359, 404
SchI	GAGTC	1 cut(s)	157
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	57
SetI	ASST	8 cut(s)	77, 223, 240, 319, 358, 402, 442, 625
SfaNI	GCATC	2 cut(s)	569, 654
SinI	GGWCC	3 cut(s)	91, 359, 404
SmiMI	CAYNNNNRTG	1 cut(s)	586
SnaBI	TACGTA	1 cut(s)	400
SphI	GCATGC	1 cut(s)	331
Sse9I	AATT	4 cut(s)	62, 160, 573, 700
SsiI	CCGC	1 cut(s)	521
SspI	AATATT	2 cut(s)	188, 651
SspMI	CTAG	4 cut(s)	72, 318, 420, 730
StyD4I	CCNGG	1 cut(s)	165
TaaI	ACNGT	4 cut(s)	344, 492, 690, 720
TaiI	ACGT	1 cut(s)	402
TasI	AATT	4 cut(s)	62, 160, 573, 700
TatI	WGTACW	1 cut(s)	339
TfiI	GAWTC	1 cut(s)	285
Tru1I	TTAA	2 cut(s)	140, 194
Tru9I	TTAA	2 cut(s)	140, 194
TscAI	CASTG	2 cut(s)	695, 725
TseI	GCWGC	2 cut(s)	115, 229
TspDTI	ATGAA	8 cut(s)	95, 168, 198, 222, 384, 471, 484, 664
TspRI	CASTG	2 cut(s)	695, 725
VneI	GTGCAC	1 cut(s)	53
VpaK11BI	GGWCC	3 cut(s)	91, 359, 404
XceI	RCATGY	2 cut(s)	331, 340
XcmI	CCANNNNNNNNNTGG	1 cut(s)	173
XspI	CTAG	4 cut(s)	72, 318, 420, 730
Zsp2I	ATGCAT	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.