Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008446

Physical Location & Seq

Genomic Coordinates Forward (+)

87187468 .. 87188200

Gene Structure 733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54179

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGCCTCCTATTGGTTTAAGGAGGAGTCATGAAAATAATTTCCAGGGTAGAGTTGGAAATGAATATTACTTAAATGGTAACAATGAAGGGCCAACAGCTACTCAGCAGCCTAAGCTTGCAGCTATCCCAATGACAATCGCAAGAAGTCAGCAGGAGATGGGAATCAGTGGTGTCCCATTTCAAAATGCTGCACCTAGTCAGAGCATGCATAACATGTACAGTCATGCAATAGGTGGTCCACCATTCTCAAACAATGCTCTGGTGAAGCCTTCATACGTAGGACCAACAAGTGTTCCTAGCCTCTCACCAGTTCAAGCTTATCTTCAACAACATGAAGTTACTGCAACGGGTGGTAATGTTCCTGCACCGTTCATGACATTTGAAGATACTGGATTTCCGCCAGAGATATTGAGAGACGTGCGATATCTGCTCCGGAGGTGGAGCATATGTCGTACGCTGCACTGCTATTGGCACACTTACACATGCAACAACTATTCTCATTTTTGGAGGCTGCAAAATGAACTGTTGGAGCCTTTCTTGTGCATCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 ko05202 ko05205 map03040 map05202 map05205

Pfam Domains

Protein Families

DEAD Helicase_C WW

Protein Analysis

183

Amino Acids

20.64

Weight (kDa)

7.75

Isoelectric Point (pI)

67.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06480 AT3G06480
fragaria_vesca	FvH4_4g21040
malus_domestica	MD13G1145900.v1.1 MD16G1139800.v1.1 MD16G1139900.v1.1
prunus_persica	Prupe.1G109600_v2.0.a1
pyrus_communis	pycom13g12540 pycom16g12400
rosa_chinensis	RchiOBHm_Chr2g0174651 RchiOBHm_Chr4g0426571
rosa_laevigata	RLG00000007289
rosa_multiflora	Rmu_co8268839.1_g000001 Rmu_sc0001821.1_g000009 Rmu_sc0007189.1_g000006
rosa_roxburghii	Rroxscaffold_5G00368580
rosa_rugosa	Rorug04G0213500
rosa_samantha	Rh4AG268700 Rh4BG275000 Rh4CG289300 Rh4DG271800
rosa_wichuraiana	Rw2G054030 Rw4G023310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	432
AciI	CCGC	1 cut(s)	398
AfaI	GTAC	2 cut(s)	218, 454
AfiI	CCNNNNNNNGG	1 cut(s)	11
AflIII	ACRYGT	1 cut(s)	213
AgsI	TTSAA	4 cut(s)	182, 314, 326, 383
AjiI	CACGTC	1 cut(s)	418
AjnI	CCWGG	1 cut(s)	42
AluBI	AGCT	4 cut(s)	98, 115, 122, 317
AluI	AGCT	4 cut(s)	98, 115, 122, 317
Alw26I	GTCTC	1 cut(s)	408
Aor13HI	TCCGGA	1 cut(s)	432
AoxI	GGCC	1 cut(s)	89
ApeKI	GCWGC	5 cut(s)	106, 119, 188, 457, 511
AspS9I	GGNCC	3 cut(s)	89, 236, 281
AsuHPI	GGTGA	2 cut(s)	274, 297
AvaII	GGWCC	2 cut(s)	236, 281
BarI	GAAGNNNNNNTAC	2 cut(s)	257, 289
BbvI	GCAGC	5 cut(s)	118, 131, 175, 444, 498
BccI	CCATC	1 cut(s)	151
BciT130I	CCWGG	1 cut(s)	44
BcoDI	GTCTC	1 cut(s)	408
BfaI	CTAG	2 cut(s)	195, 297
BisI	GCNGC	5 cut(s)	107, 120, 189, 458, 512
BlsI	GCNGC	5 cut(s)	108, 121, 190, 459, 513
Bme1390I	CCNGG	1 cut(s)	44
Bme18I	GGWCC	2 cut(s)	236, 281
BmgBI	CACGTC	1 cut(s)	418
BmgT120I	GGNCC	3 cut(s)	89, 236, 281
BmiI	GGNNCC	1 cut(s)	531
BmrFI	CCNGG	1 cut(s)	44
Bpu10I	CCTNAGC	1 cut(s)	111
BsaAI	YACGTR	1 cut(s)	277
BsaBI	GATNNNNATC	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	43
BsaWI	WCCGGW	1 cut(s)	432
BsaXI	ACNNNNNCTCC	2 cut(s)	433, 463
Bsc4I	CCNNNNNNNGG	1 cut(s)	11
Bse1I	ACTGG	2 cut(s)	308, 394
Bse8I	GATNNNNATC	1 cut(s)	161
BseAI	TCCGGA	1 cut(s)	432
BseBI	CCWGG	1 cut(s)	44
BseDI	CCNNGG	1 cut(s)	43
BseJI	GATNNNNATC	1 cut(s)	161
BseLI	CCNNNNNNNGG	1 cut(s)	11
BseMII	CTCAG	1 cut(s)	116
BseNI	ACTGG	2 cut(s)	308, 394
BseRI	GAGGAG	1 cut(s)	37
BseXI	GCAGC	5 cut(s)	118, 131, 175, 444, 498
BsgI	GTGCAG	3 cut(s)	174, 348, 443
BshFI	GGCC	1 cut(s)	91
BsiSI	CCGG	1 cut(s)	433
BsiWI	CGTACG	1 cut(s)	452
BslFI	GGGAC	1 cut(s)	158
BslI	CCNNNNNNNGG	1 cut(s)	11
BsmAI	GTCTC	1 cut(s)	408
BsmBI	CGTCTC	1 cut(s)	408
BsmFI	GGGAC	1 cut(s)	158
BsnI	GGCC	1 cut(s)	91
Bsp13I	TCCGGA	1 cut(s)	432
Bsp1407I	TGTACA	1 cut(s)	216
BspACI	CCGC	1 cut(s)	398
BspANI	GGCC	1 cut(s)	91
BspCNI	CTCAG	1 cut(s)	115
BspEI	TCCGGA	1 cut(s)	432
BspHI	TCATGA	2 cut(s)	28, 372
BspLI	GGNNCC	1 cut(s)	531
BsrGI	TGTACA	1 cut(s)	216
BsrI	ACTGG	2 cut(s)	308, 394
BssECI	CCNNGG	1 cut(s)	43
Bst2UI	CCWGG	1 cut(s)	44
Bst4CI	ACNGT	3 cut(s)	221, 369, 525
BstAUI	TGTACA	1 cut(s)	216
BstBAI	YACGTR	1 cut(s)	277
BstC8I	GCNNGC	2 cut(s)	117, 206
BstDEI	CTNAG	2 cut(s)	102, 111
BstMAI	GTCTC	1 cut(s)	408
BstMWI	GCNNNNNNNGC	2 cut(s)	112, 427
BstNI	CCWGG	1 cut(s)	44
BstNSI	RCATGY	3 cut(s)	208, 217, 486
BstSCI	CCNGG	1 cut(s)	42
BstSNI	TACGTA	1 cut(s)	277
BstV1I	GCAGC	5 cut(s)	118, 131, 175, 444, 498
BsuRI	GGCC	1 cut(s)	91
BtrI	CACGTC	1 cut(s)	418
BtsI	GCAGTG	1 cut(s)	460
BtsIMutI	CAGTG	2 cut(s)	172, 460
Cac8I	GCNNGC	2 cut(s)	117, 206
CciI	TCATGA	2 cut(s)	28, 372
Cfr13I	GGNCC	3 cut(s)	89, 236, 281
Csp6I	GTAC	2 cut(s)	217, 453
CviAII	CATG	7 cut(s)	29, 205, 214, 224, 332, 373, 483
CviQI	GTAC	2 cut(s)	217, 453
DdeI	CTNAG	2 cut(s)	102, 111
EciI	GGCGGA	1 cut(s)	387
Eco105I	TACGTA	1 cut(s)	277
Eco32I	GATATC	1 cut(s)	425
Eco47I	GGWCC	2 cut(s)	236, 281
EcoRII	CCWGG	1 cut(s)	42
EcoRV	GATATC	1 cut(s)	425
EcoT22I	ATGCAT	1 cut(s)	210
Esp3I	CGTCTC	1 cut(s)	408
FaeI	CATG	7 cut(s)	32, 208, 217, 227, 335, 376, 486
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	7 cut(s)	28, 204, 213, 223, 331, 372, 482
FauNDI	CATATG	1 cut(s)	446
Fnu4HI	GCNGC	5 cut(s)	107, 120, 189, 458, 512
Fsp4HI	GCNGC	5 cut(s)	107, 120, 189, 458, 512
FspBI	CTAG	2 cut(s)	195, 297
GluI	GCNGC	5 cut(s)	107, 120, 189, 458, 512
HaeIII	GGCC	1 cut(s)	91
HapII	CCGG	1 cut(s)	433
Hin1II	CATG	7 cut(s)	32, 208, 217, 227, 335, 376, 486
HindIII	AAGCTT	2 cut(s)	113, 315
HinfI	GANTC	2 cut(s)	25, 162
HpaII	CCGG	1 cut(s)	433
HphI	GGTGA	2 cut(s)	274, 297
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188I	TCNGA	1 cut(s)	201
Hpy188III	TCNNGA	3 cut(s)	29, 373, 433
Hpy8I	GTNNAC	1 cut(s)	239
HpyAV	CCTTC	2 cut(s)	80, 279
HpyCH4III	ACNGT	3 cut(s)	221, 369, 525
HpyCH4IV	ACGT	2 cut(s)	276, 417
HpyF10VI	GCNNNNNNNGC	2 cut(s)	112, 427
HpyF3I	CTNAG	2 cut(s)	102, 111
HpySE526I	ACGT	2 cut(s)	276, 417
Hsp92II	CATG	7 cut(s)	32, 208, 217, 227, 335, 376, 486
Kpn2I	TCCGGA	1 cut(s)	432
LmnI	GCTCC	3 cut(s)	435, 441, 529
LpnPI	CCDG	9 cut(s)	29, 56, 137, 245, 321, 375, 375, 414, 446
Lsp1109I	GCAGC	5 cut(s)	118, 131, 175, 444, 498
MaeI	CTAG	2 cut(s)	195, 297
MaeII	ACGT	2 cut(s)	276, 417
MaeIII	GTNAC	2 cut(s)	77, 337
MboII	GAAGA	3 cut(s)	314, 395, 538
MluCI	AATT	1 cut(s)	37
MlyI	GAGTC	1 cut(s)	34
MmeI	TCCRAC	2 cut(s)	34, 507
MnlI	CCTC	5 cut(s)	15, 15, 311, 429, 501
Mph1103I	ATGCAT	1 cut(s)	210
MroI	TCCGGA	1 cut(s)	432
MseI	TTAA	2 cut(s)	17, 71
MspI	CCGG	1 cut(s)	433
MspR9I	CCNGG	1 cut(s)	44
MvaI	CCWGG	1 cut(s)	44
MwoI	GCNNNNNNNGC	2 cut(s)	112, 427
NdeI	CATATG	1 cut(s)	446
NlaIII	CATG	7 cut(s)	32, 208, 217, 227, 335, 376, 486
NlaIV	GGNNCC	1 cut(s)	531
NsiI	ATGCAT	1 cut(s)	210
NspI	RCATGY	3 cut(s)	208, 217, 486
PaeI	GCATGC	1 cut(s)	208
PagI	TCATGA	2 cut(s)	28, 372
PciI	ACATGT	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	162
Pfl23II	CGTACG	1 cut(s)	452
PkrI	GCNGC	5 cut(s)	108, 121, 190, 459, 513
PleI	GAGTC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	33
Ppu21I	YACGTR	1 cut(s)	277
PscI	ACATGT	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	42
PspLI	CGTACG	1 cut(s)	452
PspN4I	GGNNCC	1 cut(s)	531
PspPI	GGNCC	3 cut(s)	89, 236, 281
RsaI	GTAC	2 cut(s)	218, 454
RsaNI	GTAC	2 cut(s)	217, 453
SaqAI	TTAA	2 cut(s)	17, 71
SatI	GCNGC	5 cut(s)	107, 120, 189, 458, 512
Sau96I	GGNCC	3 cut(s)	89, 236, 281
SchI	GAGTC	1 cut(s)	34
ScrFI	CCNGG	1 cut(s)	44
SetI	ASST	9 cut(s)	100, 117, 124, 196, 235, 279, 319, 420, 440
SinI	GGWCC	2 cut(s)	236, 281
SnaBI	TACGTA	1 cut(s)	277
SphI	GCATGC	1 cut(s)	208
Sse9I	AATT	1 cut(s)	37
SsiI	CCGC	1 cut(s)	398
SspI	AATATT	1 cut(s)	65
SspMI	CTAG	2 cut(s)	195, 297
StyD4I	CCNGG	1 cut(s)	42
TaaI	ACNGT	3 cut(s)	221, 369, 525
TaiI	ACGT	2 cut(s)	279, 420
TasI	AATT	1 cut(s)	37
TatI	WGTACW	1 cut(s)	216
TfiI	GAWTC	1 cut(s)	162
Tru1I	TTAA	2 cut(s)	17, 71
Tru9I	TTAA	2 cut(s)	17, 71
TscAI	CASTG	2 cut(s)	172, 467
TseI	GCWGC	5 cut(s)	106, 119, 188, 457, 511
TspDTI	ATGAA	7 cut(s)	45, 75, 99, 261, 348, 361, 534
TspRI	CASTG	2 cut(s)	172, 467
VpaK11BI	GGWCC	2 cut(s)	236, 281
XceI	RCATGY	3 cut(s)	208, 217, 486
XcmI	CCANNNNNNNNNTGG	1 cut(s)	50
XspI	CTAG	2 cut(s)	195, 297
Zsp2I	ATGCAT	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.