Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8268839.1

Orthogroup ID

OG0008446

Physical Location & Seq

Genomic Coordinates Forward (+)

170 .. 824

Gene Structure 655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8268839.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 655 bp

atggcaacagcggaggcagcatctgggccccgatatgccccagatgatcctacactgccgaaaccatggaagggtttgattgatggcagcacgggtgtgttgtattactggaatcccgaaaccaacattacccagtatgaaaagccggcttctttgcctccgcctttgccacccggcctgcctcctgctaccaccacaccaaagatggctgcgattcctgttgcacattcgatgcagccgaatggggtagtagtgcctcaggatgggcagcaagtgagccagtatcctcaacaacatggacatctaatggggcaacagatgccgtcctactctcaacagcagagctcccaaatgccacttgctggtcatcagcagagttctcagtcaggacaggctatgcaacagcacggccaagtgtcactaacgccacagcatatgatgcaacatccaagtcagcagatgatgcagcatccaggtcagcaaattcccccggcagcagcacagcaggcaggacagcacaccccccaccaactggggcaacaagcaccaccgagtcaaaactcacaaatgccacaagcacaagtgcatcaatattcacaccagcaacaactgcagtatatggcttatcagcaaagcagtcttccccagggccagc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 ko05202 ko05205 map03040 map05202 map05205

Pfam Domains

Protein Families

DEAD Helicase_C WW

Protein Analysis

218

Amino Acids

23.75

Weight (kDa)

6.61

Isoelectric Point (pI)

70.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06480 AT3G06480
fragaria_vesca	FvH4_4g21040
malus_domestica	MD13G1145900.v1.1 MD16G1139800.v1.1 MD16G1139900.v1.1
prunus_persica	Prupe.1G109600_v2.0.a1
pyrus_communis	pycom13g12540 pycom16g12400
rosa_chinensis	RchiOBHm_Chr2g0174651 RchiOBHm_Chr4g0426571
rosa_laevigata	RLG00000007289
rosa_multiflora	Rmu_co8268839.1_g000001 Rmu_sc0001821.1_g000009 Rmu_sc0007189.1_g000006
rosa_roxburghii	Rroxscaffold_5G00368580
rosa_rugosa	Rorug04G0213500
rosa_samantha	Rh4AG268700 Rh4BG275000 Rh4CG289300 Rh4DG271800
rosa_wichuraiana	Rw2G054030 Rw4G023310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	362, 532
AciI	CCGC	2 cut(s)	11, 161
AclWI	GGATC	1 cut(s)	41
AcoI	YGGCCR	1 cut(s)	409
AcsI	RAATTY	1 cut(s)	483
AfiI	CCNNNNNNNGG	4 cut(s)	71, 263, 362, 532
AjnI	CCWGG	2 cut(s)	472, 645
AleI	CACNNNNGTG	1 cut(s)	95
AluBI	AGCT	1 cut(s)	345
AluI	AGCT	1 cut(s)	345
Alw21I	GWGCWC	1 cut(s)	347
AlwI	GGATC	1 cut(s)	41
AlwNI	CAGNNNCTG	1 cut(s)	23
AoxI	GGCC	4 cut(s)	26, 175, 409, 649
ApaI	GGGCCC	1 cut(s)	30
ApeKI	GCWGC	8 cut(s)	17, 87, 209, 235, 268, 466, 494, 497
ApoI	RAATTY	1 cut(s)	483
AspS9I	GGNCC	3 cut(s)	26, 27, 649
AsuC2I	CCSGG	2 cut(s)	174, 491
AxyI	CCTNAGG	1 cut(s)	258
BaeGI	GKGCMC	1 cut(s)	30
BanII	GRGCYC	2 cut(s)	30, 347
BbsI	GAAGAC	1 cut(s)	632
Bbv12I	GWGCWC	1 cut(s)	347
BbvI	GCAGC	8 cut(s)	29, 99, 196, 247, 280, 478, 506, 509
BccI	CCATC	3 cut(s)	77, 199, 257
BceAI	ACGGC	2 cut(s)	307, 424
BciT130I	CCWGG	2 cut(s)	474, 647
BciVI	GTATCC	1 cut(s)	294
BcnI	CCSGG	2 cut(s)	174, 491
BfmI	CTRYAG	1 cut(s)	611
BfuI	GTATCC	1 cut(s)	294
BisI	GCNGC	8 cut(s)	18, 88, 210, 236, 269, 467, 495, 498
BlsI	GCNGC	8 cut(s)	19, 89, 211, 237, 270, 468, 496, 499
Bme1390I	CCNGG	4 cut(s)	174, 474, 491, 647
BmgT120I	GGNCC	3 cut(s)	26, 27, 649
BmiI	GGNNCC	2 cut(s)	28, 29
BmrFI	CCNGG	4 cut(s)	174, 474, 491, 647
BmrI	ACTGGG	2 cut(s)	127, 542
BmsI	GCATC	7 cut(s)	29, 222, 309, 429, 453, 478, 595
BmuI	ACTGGG	2 cut(s)	127, 542
BpiI	GAAGAC	1 cut(s)	632
BpuMI	CCSGG	2 cut(s)	174, 491
BsaJI	CCNNGG	4 cut(s)	65, 489, 645, 646
Bsc4I	CCNNNNNNNGG	4 cut(s)	71, 263, 362, 532
Bse118I	RCCGGY	1 cut(s)	145
Bse1I	ACTGG	4 cut(s)	113, 133, 280, 537
Bse21I	CCTNAGG	1 cut(s)	258
BseBI	CCWGG	2 cut(s)	474, 647
BseDI	CCNNGG	4 cut(s)	65, 489, 645, 646
BseGI	GGATG	3 cut(s)	268, 445, 469
BseLI	CCNNNNNNNGG	4 cut(s)	71, 263, 362, 532
BseMII	CTCAG	2 cut(s)	272, 395
BseNI	ACTGG	4 cut(s)	113, 133, 280, 537
BseSI	GKGCMC	1 cut(s)	30
BseXI	GCAGC	8 cut(s)	29, 99, 196, 247, 280, 478, 506, 509
BshFI	GGCC	4 cut(s)	28, 177, 411, 651
BsiHKAI	GWGCWC	1 cut(s)	347
BsiSI	CCGG	3 cut(s)	146, 174, 491
BslI	CCNNNNNNNGG	4 cut(s)	71, 263, 362, 532
BsnI	GGCC	4 cut(s)	28, 177, 411, 651
Bsp120I	GGGCCC	1 cut(s)	26
Bsp1286I	GDGCHC	2 cut(s)	30, 347
Bsp143I	GATC	1 cut(s)	46
Bsp19I	CCATGG	1 cut(s)	65
BspACI	CCGC	2 cut(s)	11, 161
BspANI	GGCC	4 cut(s)	28, 177, 411, 651
BspCNI	CTCAG	2 cut(s)	271, 394
BspLI	GGNNCC	2 cut(s)	28, 29
BspMAI	CTGCAG	1 cut(s)	615
BspPI	GGATC	1 cut(s)	41
BsrFI	RCCGGY	1 cut(s)	145
BsrI	ACTGG	4 cut(s)	113, 133, 280, 537
BssAI	RCCGGY	1 cut(s)	145
BssECI	CCNNGG	4 cut(s)	65, 489, 645, 646
BssMI	GATC	1 cut(s)	46
BssT1I	CCWWGG	1 cut(s)	65
Bst2UI	CCWGG	2 cut(s)	474, 647
BstAPI	GCANNNNNTGC	4 cut(s)	319, 439, 463, 610
BstC8I	GCNNGC	4 cut(s)	147, 179, 507, 653
BstDEI	CTNAG	2 cut(s)	258, 381
BstDSI	CCRYGG	1 cut(s)	65
BstF5I	GGATG	3 cut(s)	268, 445, 469
BstKTI	GATC	1 cut(s)	49
BstMBI	GATC	1 cut(s)	46
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 319, 439, 463, 506, 610
BstNI	CCWGG	2 cut(s)	474, 647
BstSCI	CCNGG	4 cut(s)	172, 472, 489, 645
BstSFI	CTRYAG	1 cut(s)	611
BstSLI	GKGCMC	1 cut(s)	30
BstV1I	GCAGC	8 cut(s)	29, 99, 196, 247, 280, 478, 506, 509
BstV2I	GAAGAC	1 cut(s)	632
Bsu36I	CCTNAGG	1 cut(s)	258
BsuI	GTATCC	1 cut(s)	294
BsuRI	GGCC	4 cut(s)	28, 177, 411, 651
BtgI	CCRYGG	1 cut(s)	65
BtsCI	GGATG	3 cut(s)	268, 445, 469
BtsI	GCAGTG	1 cut(s)	53
BtsIMutI	CAGTG	1 cut(s)	53
Cac8I	GCNNGC	4 cut(s)	147, 179, 507, 653
CaiI	CAGNNNCTG	1 cut(s)	23
Cfr10I	RCCGGY	1 cut(s)	145
Cfr13I	GGNCC	3 cut(s)	26, 27, 649
CviAII	CATG	2 cut(s)	66, 296
DdeI	CTNAG	2 cut(s)	258, 381
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
EaeI	YGGCCR	1 cut(s)	409
EciI	GGCGGA	1 cut(s)	150
Ecl136II	GAGCTC	1 cut(s)	345
Eco130I	CCWWGG	1 cut(s)	65
Eco24I	GRGCYC	2 cut(s)	30, 347
Eco53kI	GAGCTC	1 cut(s)	345
Eco81I	CCTNAGG	1 cut(s)	258
EcoICRI	GAGCTC	1 cut(s)	345
EcoO109I	RGGNCCY	1 cut(s)	27
EcoRII	CCWGG	2 cut(s)	472, 645
EcoT14I	CCWWGG	1 cut(s)	65
EcoT38I	GRGCYC	2 cut(s)	30, 347
ErhI	CCWWGG	1 cut(s)	65
FaeI	CATG	2 cut(s)	69, 299
FaiI	YATR	9 cut(s)	36, 67, 138, 297, 398, 435, 437, 618, 620
FatI	CATG	2 cut(s)	65, 295
FauNDI	CATATG	1 cut(s)	435
Fnu4HI	GCNGC	8 cut(s)	18, 88, 210, 236, 269, 467, 495, 498
FokI	GGATG	3 cut(s)	275, 432, 456
FriOI	GRGCYC	2 cut(s)	30, 347
Fsp4HI	GCNGC	8 cut(s)	18, 88, 210, 236, 269, 467, 495, 498
GluI	GCNGC	8 cut(s)	18, 88, 210, 236, 269, 467, 495, 498
HaeIII	GGCC	4 cut(s)	28, 177, 411, 651
HapII	CCGG	3 cut(s)	146, 174, 491
Hin1II	CATG	2 cut(s)	69, 299
HinfI	GANTC	3 cut(s)	112, 214, 553
HpaII	CCGG	3 cut(s)	146, 174, 491
Hpy188III	TCNNGA	3 cut(s)	116, 260, 387
HpyAV	CCTTC	1 cut(s)	64
HpyCH4V	TGCA	7 cut(s)	224, 235, 400, 442, 466, 586, 613
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 319, 439, 463, 506, 610
HpyF3I	CTNAG	2 cut(s)	258, 381
Hsp92II	CATG	2 cut(s)	69, 299
KroI	GCCGGC	1 cut(s)	145
KroNI	GCCGGC	1 cut(s)	147
Kzo9I	GATC	1 cut(s)	46
LmnI	GCTCC	1 cut(s)	350
Lsp1109I	GCAGC	8 cut(s)	29, 99, 196, 247, 280, 478, 506, 509
LweI	GCATC	7 cut(s)	29, 222, 309, 429, 453, 478, 595
MaeIII	GTNAC	1 cut(s)	417
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MboII	GAAGA	1 cut(s)	632
MhlI	GDGCHC	2 cut(s)	30, 347
MluCI	AATT	1 cut(s)	483
MlyI	GAGTC	1 cut(s)	562
MnlI	CCTC	5 cut(s)	7, 168, 192, 267, 297
MroNI	GCCGGC	1 cut(s)	145
MslI	CAYNNNNRTG	1 cut(s)	95
MspA1I	CMGCKG	1 cut(s)	11
MspI	CCGG	3 cut(s)	146, 174, 491
MspR9I	CCNGG	4 cut(s)	174, 474, 491, 647
MvaI	CCWGG	2 cut(s)	474, 647
MwoI	GCNNNNNNNGC	6 cut(s)	17, 319, 439, 463, 506, 610
NaeI	GCCGGC	1 cut(s)	147
NciI	CCSGG	2 cut(s)	174, 491
NcoI	CCATGG	1 cut(s)	65
NdeI	CATATG	1 cut(s)	435
NdeII	GATC	1 cut(s)	46
NgoMIV	GCCGGC	1 cut(s)	145
NlaIII	CATG	2 cut(s)	69, 299
NlaIV	GGNNCC	2 cut(s)	28, 29
NmuCI	GTSAC	1 cut(s)	417
OliI	CACNNNNGTG	1 cut(s)	95
PasI	CCCWGGG	1 cut(s)	646
PcsI	WCGNNNNNNNCGW	1 cut(s)	236
PdiI	GCCGGC	1 cut(s)	147
PfeI	GAWTC	2 cut(s)	112, 214
PflMI	CCANNNNNTGG	2 cut(s)	362, 532
PkrI	GCNGC	8 cut(s)	19, 89, 211, 237, 270, 468, 496, 499
PleI	GAGTC	1 cut(s)	561
PpsI	GAGTC	1 cut(s)	561
Psp124BI	GAGCTC	1 cut(s)	347
Psp6I	CCWGG	2 cut(s)	472, 645
PspGI	CCWGG	2 cut(s)	472, 645
PspN4I	GGNNCC	2 cut(s)	28, 29
PspOMI	GGGCCC	1 cut(s)	26
PspPI	GGNCC	3 cut(s)	26, 27, 649
PstI	CTGCAG	1 cut(s)	615
PstNI	CAGNNNCTG	1 cut(s)	23
RseI	CAYNNNNRTG	1 cut(s)	95
SacI	GAGCTC	1 cut(s)	347
SatI	GCNGC	8 cut(s)	18, 88, 210, 236, 269, 467, 495, 498
Sau3AI	GATC	1 cut(s)	46
Sau96I	GGNCC	3 cut(s)	26, 27, 649
SchI	GAGTC	1 cut(s)	562
ScrFI	CCNGG	4 cut(s)	174, 474, 491, 647
SduI	GDGCHC	2 cut(s)	30, 347
SetI	ASST	2 cut(s)	347, 478
SfaNI	GCATC	7 cut(s)	29, 222, 309, 429, 453, 478, 595
SfcI	CTRYAG	1 cut(s)	611
SmiMI	CAYNNNNRTG	1 cut(s)	95
Sse9I	AATT	1 cut(s)	483
SsiI	CCGC	2 cut(s)	11, 161
SspI	AATATT	1 cut(s)	593
SstI	GAGCTC	1 cut(s)	347
StyD4I	CCNGG	4 cut(s)	172, 472, 489, 645
StyI	CCWWGG	1 cut(s)	65
TaqI	TCGA	1 cut(s)	230
TasI	AATT	1 cut(s)	483
TfiI	GAWTC	2 cut(s)	112, 214
TscAI	CASTG	1 cut(s)	60
TseFI	GTSAC	1 cut(s)	417
TseI	GCWGC	8 cut(s)	17, 87, 209, 235, 268, 466, 494, 497
Tsp45I	GTSAC	1 cut(s)	417
TspDTI	ATGAA	1 cut(s)	153
TspRI	CASTG	1 cut(s)	60
Van91I	CCANNNNNTGG	2 cut(s)	362, 532
XapI	RAATTY	1 cut(s)	483
XcmI	CCANNNNNNNNNTGG	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.