DEAD-box ATP-dependent RNA helicase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G06480 AT3G06480 |
| fragaria_vesca | FvH4_4g21040 |
| malus_domestica | MD13G1145900.v1.1 MD16G1139800.v1.1 MD16G1139900.v1.1 |
| prunus_persica | Prupe.1G109600_v2.0.a1 |
| pyrus_communis | pycom13g12540 pycom16g12400 |
| rosa_chinensis | RchiOBHm_Chr2g0174651 RchiOBHm_Chr4g0426571 |
| rosa_laevigata | RLG00000007289 |
| rosa_multiflora | Rmu_co8268839.1_g000001 Rmu_sc0001821.1_g000009 Rmu_sc0007189.1_g000006 |
| rosa_roxburghii | Rroxscaffold_5G00368580 |
| rosa_rugosa | Rorug04G0213500 |
| rosa_samantha | Rh4AG268700 Rh4BG275000 Rh4CG289300 Rh4DG271800 |
| rosa_wichuraiana | Rw2G054030 Rw4G023310 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 1019 |
| AccB1I | GGYRCC | 1 cut(s) | 1019 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 362, 532, 3212 |
| AccI | GTMKAC | 1 cut(s) | 3264 |
| AccII | CGCG | 3 cut(s) | 2842, 2856, 2862 |
| AccIII | TCCGGA | 1 cut(s) | 2187 |
| AclWI | GGATC | 6 cut(s) | 41, 1465, 2023, 2611, 3188, 3201 |
| AcoI | YGGCCR | 3 cut(s) | 409, 841, 1750 |
| AcsI | RAATTY | 3 cut(s) | 483, 1598, 1815 |
| AcuI | CTGAAG | 1 cut(s) | 735 |
| AcvI | CACGTG | 1 cut(s) | 1629 |
| AdeI | CACNNNGTG | 1 cut(s) | 3357 |
| AfaI | GTAC | 8 cut(s) | 756, 1021, 1160, 1865, 2119, 2439, 2825, 3319 |
| AflIII | ACRYGT | 1 cut(s) | 1155 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3048 |
| AjiI | CACGTC | 1 cut(s) | 2654 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1746, 1778 |
| AleI | CACNNNNGTG | 1 cut(s) | 95 |
| Alw21I | GWGCWC | 3 cut(s) | 347, 876, 1648 |
| Alw26I | GTCTC | 5 cut(s) | 1350, 2160, 2350, 3243, 3332 |
| Alw44I | GTGCAC | 1 cut(s) | 872 |
| AlwI | GGATC | 6 cut(s) | 41, 1465, 2023, 2611, 3188, 3201 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 23, 863, 3212, 3331 |
| Aor13HI | TCCGGA | 1 cut(s) | 2187 |
| ApaI | GGGCCC | 1 cut(s) | 30 |
| ApaLI | GTGCAC | 1 cut(s) | 872 |
| ApoI | RAATTY | 3 cut(s) | 483, 1598, 1815 |
| ArsI | GACNNNNNNTTYG | 8 cut(s) | 1787, 1819, 2522, 2554, 2555, 2587, 2995, 3027 |
| AseI | ATTAAT | 1 cut(s) | 1743 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2884, 2928 |
| Asp718I | GGTACC | 1 cut(s) | 1019 |
| AspLEI | GCGC | 1 cut(s) | 2842 |
| AsuC2I | CCSGG | 5 cut(s) | 174, 491, 742, 914, 2287 |
| AsuHPI | GGTGA | 6 cut(s) | 1216, 1239, 1942, 2156, 2171, 3343 |
| AsuII | TTCGAA | 1 cut(s) | 2932 |
| AvaII | GGWCC | 7 cut(s) | 910, 1178, 1223, 1655, 2684, 2768, 3227 |
| AxyI | CCTNAGG | 2 cut(s) | 258, 3288 |
| BaeGI | GKGCMC | 3 cut(s) | 30, 876, 2430 |
| BalI | TGGCCA | 2 cut(s) | 843, 1752 |
| BamHI | GGATCC | 1 cut(s) | 3193 |
| BanI | GGYRCC | 1 cut(s) | 1019 |
| BanII | GRGCYC | 6 cut(s) | 30, 347, 1648, 2041, 2921, 3220 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1199, 1231 |
| BauI | CACGAG | 1 cut(s) | 2590 |
| BbrPI | CACGTG | 1 cut(s) | 1629 |
| BbsI | GAAGAC | 1 cut(s) | 2301 |
| Bbv12I | GWGCWC | 3 cut(s) | 347, 876, 1648 |
| BbvCI | CCTCAGC | 1 cut(s) | 1659 |
| BccI | CCATC | 9 cut(s) | 77, 199, 257, 700, 885, 1093, 2630, 2663, 2687 |
| BceAI | ACGGC | 8 cut(s) | 307, 424, 1497, 2694, 2961, 3003, 3066, 3105 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3244, 3278 |
| BciVI | GTATCC | 3 cut(s) | 294, 1630, 1768 |
| BclI | TGATCA | 2 cut(s) | 2092, 3172 |
| BcnI | CCSGG | 5 cut(s) | 174, 491, 742, 914, 2287 |
| BcoDI | GTCTC | 5 cut(s) | 1350, 2160, 2350, 3243, 3332 |
| BfaI | CTAG | 8 cut(s) | 891, 1137, 1239, 1673, 2405, 2688, 3108, 3144 |
| BfmI | CTRYAG | 3 cut(s) | 611, 3076, 3100 |
| BfuI | GTATCC | 3 cut(s) | 294, 1630, 1768 |
| BmcAI | AGTACT | 1 cut(s) | 3319 |
| Bme18I | GGWCC | 7 cut(s) | 910, 1178, 1223, 1655, 2684, 2768, 3227 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3048 |
| BmgBI | CACGTC | 1 cut(s) | 2654 |
| BmrI | ACTGGG | 5 cut(s) | 127, 542, 2331, 2349, 3349 |
| BmuI | ACTGGG | 5 cut(s) | 127, 542, 2331, 2349, 3349 |
| BpiI | GAAGAC | 1 cut(s) | 2301 |
| BpmI | CTGGAG | 1 cut(s) | 3353 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1053, 1659 |
| Bpu14I | TTCGAA | 1 cut(s) | 2932 |
| BpuEI | CTTGAG | 1 cut(s) | 2139 |
| BpuMI | CCSGG | 5 cut(s) | 174, 491, 742, 914, 2287 |
| BsaAI | YACGTR | 4 cut(s) | 1219, 1629, 2105, 2456 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1103 |
| BsaI | GGTCTC | 2 cut(s) | 2350, 3332 |
| BsaWI | WCCGGW | 2 cut(s) | 1454, 2187 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 3022, 3040, 3052, 3052, 3070, 3082 |
| Bse118I | RCCGGY | 1 cut(s) | 145 |
| Bse21I | CCTNAGG | 2 cut(s) | 258, 3288 |
| Bse3DI | GCAATG | 1 cut(s) | 1948 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1103 |
| BseAI | TCCGGA | 1 cut(s) | 2187 |
| BseGI | GGATG | 7 cut(s) | 268, 445, 469, 778, 2641, 2674, 2842 |
| BseJI | GATNNNNATC | 1 cut(s) | 1103 |
| BseMI | GCAATG | 1 cut(s) | 1948 |
| BseMII | CTCAG | 8 cut(s) | 272, 395, 710, 1058, 1538, 1673, 2355, 3302 |
| BseRI | GAGGAG | 3 cut(s) | 979, 1601, 3350 |
| BseSI | GKGCMC | 3 cut(s) | 30, 876, 2430 |
| BseYI | CCCAGC | 1 cut(s) | 2330 |
| BsgI | GTGCAG | 4 cut(s) | 746, 1116, 1290, 1609 |
| Bsh1236I | CGCG | 3 cut(s) | 2842, 2856, 2862 |
| BshNI | GGYRCC | 1 cut(s) | 1019 |
| BsiHKAI | GWGCWC | 3 cut(s) | 347, 876, 1648 |
| BsiSI | CCGG | 8 cut(s) | 146, 174, 491, 741, 914, 1455, 2188, 2286 |
| BsmAI | GTCTC | 5 cut(s) | 1350, 2160, 2350, 3243, 3332 |
| BsmI | GAATGC | 1 cut(s) | 1794 |
| Bso31I | GGTCTC | 2 cut(s) | 2350, 3332 |
| Bsp119I | TTCGAA | 1 cut(s) | 2932 |
| Bsp120I | GGGCCC | 1 cut(s) | 26 |
| Bsp1286I | GDGCHC | 8 cut(s) | 30, 347, 876, 1648, 2041, 2430, 2921, 3220 |
| Bsp13I | TCCGGA | 1 cut(s) | 2187 |
| Bsp1407I | TGTACA | 2 cut(s) | 1158, 1863 |
| Bsp19I | CCATGG | 1 cut(s) | 65 |
| BspCNI | CTCAG | 8 cut(s) | 271, 394, 709, 1057, 1537, 1672, 2356, 3301 |
| BspEI | TCCGGA | 1 cut(s) | 2187 |
| BspFNI | CGCG | 3 cut(s) | 2842, 2856, 2862 |
| BspHI | TCATGA | 2 cut(s) | 970, 1314 |
| BspMAI | CTGCAG | 1 cut(s) | 615 |
| BspPI | GGATC | 6 cut(s) | 41, 1465, 2023, 2611, 3188, 3201 |
| BspQI | GCTCTTC | 1 cut(s) | 1425 |
| BspT104I | TTCGAA | 1 cut(s) | 2932 |
| BspT107I | GGYRCC | 1 cut(s) | 1019 |
| BspTNI | GGTCTC | 2 cut(s) | 2350, 3332 |
| BsrDI | GCAATG | 1 cut(s) | 1948 |
| BsrFI | RCCGGY | 1 cut(s) | 145 |
| BsrGI | TGTACA | 2 cut(s) | 1158, 1863 |
| BssAI | RCCGGY | 1 cut(s) | 145 |
| BssSI | CACGAG | 1 cut(s) | 2590 |
| BssT1I | CCWWGG | 1 cut(s) | 65 |
| Bst2BI | CACGAG | 1 cut(s) | 2590 |
| Bst4CI | ACNGT | 8 cut(s) | 887, 1163, 1311, 1509, 1540, 1980, 2929, 3131 |
| Bst6I | CTCTTC | 1 cut(s) | 1425 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 319, 439, 463, 610 |
| BstAUI | TGTACA | 2 cut(s) | 1158, 1863 |
| BstBAI | YACGTR | 4 cut(s) | 1219, 1629, 2105, 2456 |
| BstBI | TTCGAA | 1 cut(s) | 2932 |
| BstDSI | CCRYGG | 4 cut(s) | 65, 2233, 2710, 3082 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3228 |
| BstF5I | GGATG | 7 cut(s) | 268, 445, 469, 778, 2641, 2674, 2842 |
| BstFNI | CGCG | 3 cut(s) | 2842, 2856, 2862 |
| BstHHI | GCGC | 1 cut(s) | 2842 |
| BstMAI | GTCTC | 5 cut(s) | 1350, 2160, 2350, 3243, 3332 |
| BstNSI | RCATGY | 2 cut(s) | 1150, 1159 |
| BstSFI | CTRYAG | 3 cut(s) | 611, 3076, 3100 |
| BstSLI | GKGCMC | 3 cut(s) | 30, 876, 2430 |
| BstSNI | TACGTA | 1 cut(s) | 1219 |
| BstUI | CGCG | 3 cut(s) | 2842, 2856, 2862 |
| BstV2I | GAAGAC | 1 cut(s) | 2301 |
| BstX2I | RGATCY | 4 cut(s) | 1457, 2028, 2603, 3193 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 800, 2312 |
| BstYI | RGATCY | 4 cut(s) | 1457, 2028, 2603, 3193 |
| Bsu36I | CCTNAGG | 2 cut(s) | 258, 3288 |
| BsuI | GTATCC | 3 cut(s) | 294, 1630, 1768 |
| BtgI | CCRYGG | 4 cut(s) | 65, 2233, 2710, 3082 |
| BtrI | CACGTC | 1 cut(s) | 2654 |
| BtsCI | GGATG | 7 cut(s) | 268, 445, 469, 778, 2641, 2674, 2842 |
| BtsI | GCAGTG | 1 cut(s) | 53 |
| BtsIMutI | CAGTG | 5 cut(s) | 53, 1114, 1514, 1545, 3309 |
| CaiI | CAGNNNCTG | 4 cut(s) | 23, 863, 3212, 3331 |
| CciI | TCATGA | 2 cut(s) | 970, 1314 |
| CfoI | GCGC | 1 cut(s) | 2842 |
| Cfr10I | RCCGGY | 1 cut(s) | 145 |
| CseI | GACGC | 3 cut(s) | 2862, 2868, 3275 |
| Csp6I | GTAC | 8 cut(s) | 755, 1020, 1159, 1864, 2118, 2438, 2824, 3318 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 2206, 2241, 2629, 2662, 2664, 2697 |
| CviQI | GTAC | 8 cut(s) | 755, 1020, 1159, 1864, 2118, 2438, 2824, 3318 |
| DraIII | CACNNNGTG | 1 cut(s) | 3357 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3048 |
| EaeI | YGGCCR | 3 cut(s) | 409, 841, 1750 |
| Eam1104I | CTCTTC | 1 cut(s) | 1425 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3048 |
| EarI | CTCTTC | 1 cut(s) | 1425 |
| EciI | GGCGGA | 3 cut(s) | 150, 1329, 3210 |
| Ecl136II | GAGCTC | 2 cut(s) | 345, 1646 |
| Eco105I | TACGTA | 1 cut(s) | 1219 |
| Eco130I | CCWWGG | 1 cut(s) | 65 |
| Eco24I | GRGCYC | 6 cut(s) | 30, 347, 1648, 2041, 2921, 3220 |
| Eco31I | GGTCTC | 2 cut(s) | 2350, 3332 |
| Eco47I | GGWCC | 7 cut(s) | 910, 1178, 1223, 1655, 2684, 2768, 3227 |
| Eco53kI | GAGCTC | 2 cut(s) | 345, 1646 |
| Eco57I | CTGAAG | 1 cut(s) | 735 |
| Eco72I | CACGTG | 1 cut(s) | 1629 |
| Eco81I | CCTNAGG | 2 cut(s) | 258, 3288 |
| EcoICRI | GAGCTC | 2 cut(s) | 345, 1646 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3228 |
| EcoO109I | RGGNCCY | 4 cut(s) | 27, 1655, 2768, 3165 |
| EcoT14I | CCWWGG | 1 cut(s) | 65 |
| EcoT22I | ATGCAT | 2 cut(s) | 637, 1152 |
| EcoT38I | GRGCYC | 6 cut(s) | 30, 347, 1648, 2041, 2921, 3220 |
| ErhI | CCWWGG | 1 cut(s) | 65 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1248, 1280, 1746, 1778 |
| FauI | CCCGC | 1 cut(s) | 609 |
| FauNDI | CATATG | 1 cut(s) | 435 |
| FbaI | TGATCA | 2 cut(s) | 2092, 3172 |
| FblI | GTMKAC | 1 cut(s) | 3264 |
| FokI | GGATG | 7 cut(s) | 275, 432, 456, 765, 2648, 2681, 2849 |
| FriOI | GRGCYC | 6 cut(s) | 30, 347, 1648, 2041, 2921, 3220 |
| FspBI | CTAG | 8 cut(s) | 891, 1137, 1239, 1673, 2405, 2688, 3108, 3144 |
| GlaI | GCGC | 1 cut(s) | 2841 |
| GsaI | CCCAGC | 1 cut(s) | 2334 |
| GsuI | CTGGAG | 1 cut(s) | 3353 |
| HapII | CCGG | 8 cut(s) | 146, 174, 491, 741, 914, 1455, 2188, 2286 |
| HgaI | GACGC | 3 cut(s) | 2862, 2868, 3275 |
| HhaI | GCGC | 1 cut(s) | 2842 |
| Hin6I | GCGC | 1 cut(s) | 2840 |
| HinP1I | GCGC | 1 cut(s) | 2840 |
| HincII | GTYRAC | 2 cut(s) | 2269, 3265 |
| HindII | GTYRAC | 2 cut(s) | 2269, 3265 |
| HindIII | AAGCTT | 2 cut(s) | 1055, 1257 |
| HpaI | GTTAAC | 1 cut(s) | 2269 |
| HpaII | CCGG | 8 cut(s) | 146, 174, 491, 741, 914, 1455, 2188, 2286 |
| HphI | GGTGA | 6 cut(s) | 1216, 1239, 1942, 2156, 2171, 3343 |
| Hpy166II | GTNNAC | 8 cut(s) | 874, 1181, 1831, 1866, 2269, 2305, 2651, 3265 |
| Hpy188I | TCNGA | 7 cut(s) | 1143, 1527, 2365, 2916, 3036, 3072, 3177 |
| Hpy8I | GTNNAC | 8 cut(s) | 874, 1181, 1831, 1866, 2269, 2305, 2651, 3265 |
| Hpy99I | CGWCG | 3 cut(s) | 3024, 3126, 3269 |
| HpyAV | CCTTC | 9 cut(s) | 64, 792, 840, 1022, 1221, 1501, 1772, 2841, 3184 |
| HpyCH4III | ACNGT | 8 cut(s) | 887, 1163, 1311, 1509, 1540, 1980, 2929, 3131 |
| HpyCH4IV | ACGT | 7 cut(s) | 1218, 1628, 2104, 2116, 2223, 2455, 2653 |
| HpySE526I | ACGT | 7 cut(s) | 1218, 1628, 2104, 2116, 2223, 2455, 2653 |
| HspAI | GCGC | 1 cut(s) | 2840 |
| Kpn2I | TCCGGA | 1 cut(s) | 2187 |
| KpnI | GGTACC | 1 cut(s) | 1023 |
| KroI | GCCGGC | 1 cut(s) | 145 |
| KroNI | GCCGGC | 1 cut(s) | 147 |
| Ksp22I | TGATCA | 2 cut(s) | 2092, 3172 |
| KspAI | GTTAAC | 1 cut(s) | 2269 |
| LguI | GCTCTTC | 1 cut(s) | 1425 |
| MaeI | CTAG | 8 cut(s) | 891, 1137, 1239, 1673, 2405, 2688, 3108, 3144 |
| MaeII | ACGT | 7 cut(s) | 1218, 1628, 2104, 2116, 2223, 2455, 2653 |
| MaeIII | GTNAC | 4 cut(s) | 417, 1279, 2144, 3125 |
| MflI | RGATCY | 4 cut(s) | 1457, 2028, 2603, 3193 |
| MhlI | GDGCHC | 8 cut(s) | 30, 347, 876, 1648, 2041, 2430, 2921, 3220 |
| MlsI | TGGCCA | 2 cut(s) | 843, 1752 |
| MluNI | TGGCCA | 2 cut(s) | 843, 1752 |
| MlyI | GAGTC | 6 cut(s) | 562, 976, 2498, 3040, 3058, 3070 |
| MmeI | TCCRAC | 6 cut(s) | 976, 1580, 2894, 3014, 3020, 3050 |
| Mox20I | TGGCCA | 2 cut(s) | 843, 1752 |
| Mph1103I | ATGCAT | 2 cut(s) | 637, 1152 |
| MroI | TCCGGA | 1 cut(s) | 2187 |
| MroNI | GCCGGC | 1 cut(s) | 145 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2884, 2928 |
| MscI | TGGCCA | 2 cut(s) | 843, 1752 |
| MseI | TTAA | 7 cut(s) | 959, 1013, 1743, 1917, 2177, 2268, 2393 |
| MslI | CAYNNNNRTG | 2 cut(s) | 95, 1405 |
| Msp20I | TGGCCA | 2 cut(s) | 843, 1752 |
| MspA1I | CMGCKG | 3 cut(s) | 11, 616, 2387 |
| MspI | CCGG | 8 cut(s) | 146, 174, 491, 741, 914, 1455, 2188, 2286 |
| Mva1269I | GAATGC | 1 cut(s) | 1794 |
| MvnI | CGCG | 3 cut(s) | 2842, 2856, 2862 |
| NaeI | GCCGGC | 1 cut(s) | 147 |
| NciI | CCSGG | 5 cut(s) | 174, 491, 742, 914, 2287 |
| NcoI | CCATGG | 1 cut(s) | 65 |
| NdeI | CATATG | 1 cut(s) | 435 |
| NgoMIV | GCCGGC | 1 cut(s) | 145 |
| NmuCI | GTSAC | 2 cut(s) | 417, 2144 |
| NsiI | ATGCAT | 2 cut(s) | 637, 1152 |
| NspI | RCATGY | 2 cut(s) | 1150, 1159 |
| NspV | TTCGAA | 1 cut(s) | 2932 |
| OliI | CACNNNNGTG | 1 cut(s) | 95 |
| PaeI | GCATGC | 1 cut(s) | 1150 |
| PagI | TCATGA | 2 cut(s) | 970, 1314 |
| PciI | ACATGT | 1 cut(s) | 1155 |
| PciSI | GCTCTTC | 1 cut(s) | 1425 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 236, 3019 |
| PctI | GAATGC | 1 cut(s) | 1794 |
| PdiI | GCCGGC | 1 cut(s) | 147 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2884, 2928 |
| PfeI | GAWTC | 7 cut(s) | 112, 214, 730, 1104, 2868, 2885, 3209 |
| PflFI | GACNNNGTC | 2 cut(s) | 2171, 2300 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 362, 532, 3212 |
| PleI | GAGTC | 6 cut(s) | 561, 975, 2498, 3039, 3057, 3069 |
| PmaCI | CACGTG | 1 cut(s) | 1629 |
| PmlI | CACGTG | 1 cut(s) | 1629 |
| PpsI | GAGTC | 6 cut(s) | 561, 975, 2498, 3039, 3057, 3069 |
| Ppu21I | YACGTR | 4 cut(s) | 1219, 1629, 2105, 2456 |
| PpuMI | RGGWCCY | 2 cut(s) | 1655, 2768 |
| PscI | ACATGT | 1 cut(s) | 1155 |
| PshBI | ATTAAT | 1 cut(s) | 1743 |
| Psp124BI | GAGCTC | 2 cut(s) | 347, 1648 |
| Psp5II | RGGWCCY | 2 cut(s) | 1655, 2768 |
| PspCI | CACGTG | 1 cut(s) | 1629 |
| PspFI | CCCAGC | 1 cut(s) | 2330 |
| PspOMI | GGGCCC | 1 cut(s) | 26 |
| PspPPI | RGGWCCY | 2 cut(s) | 1655, 2768 |
| PstI | CTGCAG | 1 cut(s) | 615 |
| PstNI | CAGNNNCTG | 4 cut(s) | 23, 863, 3212, 3331 |
| PsuI | RGATCY | 4 cut(s) | 1457, 2028, 2603, 3193 |
| PsyI | GACNNNGTC | 2 cut(s) | 2171, 2300 |
| PvuII | CAGCTG | 1 cut(s) | 2387 |
| RsaI | GTAC | 8 cut(s) | 756, 1021, 1160, 1865, 2119, 2439, 2825, 3319 |
| RsaNI | GTAC | 8 cut(s) | 755, 1020, 1159, 1864, 2118, 2438, 2824, 3318 |
| RseI | CAYNNNNRTG | 2 cut(s) | 95, 1405 |
| SacI | GAGCTC | 2 cut(s) | 347, 1648 |
| SalI | GTCGAC | 1 cut(s) | 3263 |
| SapI | GCTCTTC | 1 cut(s) | 1425 |
| SaqAI | TTAA | 7 cut(s) | 959, 1013, 1743, 1917, 2177, 2268, 2393 |
| ScaI | AGTACT | 1 cut(s) | 3319 |
| SchI | GAGTC | 6 cut(s) | 562, 976, 2498, 3040, 3058, 3070 |
| SduI | GDGCHC | 8 cut(s) | 30, 347, 876, 1648, 2041, 2430, 2921, 3220 |
| SfcI | CTRYAG | 3 cut(s) | 611, 3076, 3100 |
| SfuI | TTCGAA | 1 cut(s) | 2932 |
| SinI | GGWCC | 7 cut(s) | 910, 1178, 1223, 1655, 2684, 2768, 3227 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 95, 1405 |
| SmlI | CTYRAG | 1 cut(s) | 2154 |
| SmoI | CTYRAG | 1 cut(s) | 2154 |
| SnaBI | TACGTA | 1 cut(s) | 1219 |
| SphI | GCATGC | 1 cut(s) | 1150 |
| SspI | AATATT | 2 cut(s) | 1007, 1936 |
| SspMI | CTAG | 8 cut(s) | 891, 1137, 1239, 1673, 2405, 2688, 3108, 3144 |
| SstI | GAGCTC | 2 cut(s) | 347, 1648 |
| StyI | CCWWGG | 1 cut(s) | 65 |
| TaaI | ACNGT | 8 cut(s) | 887, 1163, 1311, 1509, 1540, 1980, 2929, 3131 |
| TaiI | ACGT | 7 cut(s) | 1221, 1631, 2107, 2119, 2226, 2458, 2656 |
| TaqI | TCGA | 5 cut(s) | 230, 1786, 2871, 2932, 3264 |
| TatI | WGTACW | 4 cut(s) | 754, 1158, 1863, 3317 |
| TauI | GCSGC | 4 cut(s) | 807, 2523, 2556, 3009 |
| TfiI | GAWTC | 7 cut(s) | 112, 214, 730, 1104, 2868, 2885, 3209 |
| Tru1I | TTAA | 7 cut(s) | 959, 1013, 1743, 1917, 2177, 2268, 2393 |
| Tru9I | TTAA | 7 cut(s) | 959, 1013, 1743, 1917, 2177, 2268, 2393 |
| TscAI | CASTG | 5 cut(s) | 60, 1114, 1514, 1545, 3309 |
| TseFI | GTSAC | 2 cut(s) | 417, 2144 |
| Tsp45I | GTSAC | 2 cut(s) | 417, 2144 |
| TspRI | CASTG | 5 cut(s) | 60, 1114, 1514, 1545, 3309 |
| Tth111I | GACNNNGTC | 2 cut(s) | 2171, 2300 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 362, 532, 3212 |
| VneI | GTGCAC | 1 cut(s) | 872 |
| VpaK11BI | GGWCC | 7 cut(s) | 910, 1178, 1223, 1655, 2684, 2768, 3227 |
| VspI | ATTAAT | 1 cut(s) | 1743 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3228 |
| XapI | RAATTY | 3 cut(s) | 483, 1598, 1815 |
| XbaI | TCTAGA | 1 cut(s) | 2404 |
| XceI | RCATGY | 2 cut(s) | 1150, 1159 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 202, 992, 1934 |
| XmiI | GTMKAC | 1 cut(s) | 3264 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2884, 2928 |
| XspI | CTAG | 8 cut(s) | 891, 1137, 1239, 1673, 2405, 2688, 3108, 3144 |
| ZrmI | AGTACT | 1 cut(s) | 3319 |
| Zsp2I | ATGCAT | 2 cut(s) | 637, 1152 |