DEAD-box ATP-dependent RNA helicase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G06480 AT3G06480 |
| fragaria_vesca | FvH4_4g21040 |
| malus_domestica | MD13G1145900.v1.1 MD16G1139800.v1.1 MD16G1139900.v1.1 |
| prunus_persica | Prupe.1G109600_v2.0.a1 |
| pyrus_communis | pycom13g12540 pycom16g12400 |
| rosa_chinensis | RchiOBHm_Chr2g0174651 RchiOBHm_Chr4g0426571 |
| rosa_laevigata | RLG00000007289 |
| rosa_multiflora | Rmu_co8268839.1_g000001 Rmu_sc0001821.1_g000009 Rmu_sc0007189.1_g000006 |
| rosa_roxburghii | Rroxscaffold_5G00368580 |
| rosa_rugosa | Rorug04G0213500 |
| rosa_samantha | Rh4AG268700 Rh4BG275000 Rh4CG289300 Rh4DG271800 |
| rosa_wichuraiana | Rw2G054030 Rw4G023310 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 359, 529 |
| AccI | GTMKAC | 1 cut(s) | 3327 |
| AccII | CGCG | 3 cut(s) | 2923, 2937, 2943 |
| AccIII | TCCGGA | 1 cut(s) | 2268 |
| AclWI | GGATC | 6 cut(s) | 41, 1546, 2104, 2692, 3251, 3264 |
| AcoI | YGGCCR | 3 cut(s) | 406, 922, 1831 |
| AcsI | RAATTY | 3 cut(s) | 480, 1679, 1896 |
| AcuI | CTGAAG | 1 cut(s) | 816 |
| AcvI | CACGTG | 1 cut(s) | 1710 |
| AdeI | CACNNNGTG | 1 cut(s) | 3405 |
| AfaI | GTAC | 7 cut(s) | 837, 1241, 1946, 2200, 2520, 2906, 3367 |
| AflIII | ACRYGT | 1 cut(s) | 1236 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3123 |
| AjiI | CACGTC | 1 cut(s) | 2735 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1827, 1859 |
| AleI | CACNNNNGTG | 1 cut(s) | 95 |
| Alw21I | GWGCWC | 3 cut(s) | 344, 957, 1729 |
| Alw26I | GTCTC | 5 cut(s) | 1431, 2241, 2431, 3306, 3380 |
| Alw44I | GTGCAC | 1 cut(s) | 953 |
| AlwI | GGATC | 6 cut(s) | 41, 1546, 2104, 2692, 3251, 3264 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 23, 944, 3275, 3379 |
| Ama87I | CYCGRG | 1 cut(s) | 3351 |
| Aor13HI | TCCGGA | 1 cut(s) | 2268 |
| ApaI | GGGCCC | 1 cut(s) | 30 |
| ApaLI | GTGCAC | 1 cut(s) | 953 |
| ApoI | RAATTY | 3 cut(s) | 480, 1679, 1896 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 1868, 1900, 2636, 2668, 3070, 3102 |
| AseI | ATTAAT | 1 cut(s) | 1824 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2965, 3009 |
| AspLEI | GCGC | 1 cut(s) | 2923 |
| AsuC2I | CCSGG | 4 cut(s) | 174, 488, 823, 2368 |
| AsuHPI | GGTGA | 6 cut(s) | 1297, 1320, 2023, 2237, 2252, 3391 |
| AsuII | TTCGAA | 1 cut(s) | 3013 |
| AvaI | CYCGRG | 1 cut(s) | 3351 |
| AvaII | GGWCC | 7 cut(s) | 991, 1259, 1304, 1736, 2765, 2849, 3290 |
| AxyI | CCTNAGG | 1 cut(s) | 255 |
| BaeGI | GKGCMC | 3 cut(s) | 30, 957, 2511 |
| BalI | TGGCCA | 2 cut(s) | 924, 1833 |
| BamHI | GGATCC | 1 cut(s) | 3256 |
| BanII | GRGCYC | 5 cut(s) | 30, 344, 1729, 2122, 3002 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1280, 1312 |
| BauI | CACGAG | 1 cut(s) | 2671 |
| BbrPI | CACGTG | 1 cut(s) | 1710 |
| BbsI | GAAGAC | 2 cut(s) | 629, 2382 |
| Bbv12I | GWGCWC | 3 cut(s) | 344, 957, 1729 |
| BbvCI | CCTCAGC | 1 cut(s) | 1740 |
| BceAI | ACGGC | 8 cut(s) | 304, 421, 1578, 2775, 3042, 3078, 3129, 3168 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3307, 3341 |
| BciVI | GTATCC | 3 cut(s) | 291, 1711, 1849 |
| BclI | TGATCA | 2 cut(s) | 2173, 3235 |
| BcnI | CCSGG | 4 cut(s) | 174, 488, 823, 2368 |
| BcoDI | GTCTC | 5 cut(s) | 1431, 2241, 2431, 3306, 3380 |
| BfaI | CTAG | 8 cut(s) | 972, 1218, 1320, 1754, 2486, 2769, 3171, 3207 |
| BfmI | CTRYAG | 3 cut(s) | 608, 3139, 3163 |
| BfuI | GTATCC | 3 cut(s) | 291, 1711, 1849 |
| BmcAI | AGTACT | 1 cut(s) | 3367 |
| Bme18I | GGWCC | 7 cut(s) | 991, 1259, 1304, 1736, 2765, 2849, 3290 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3123 |
| BmeT110I | CYCGRG | 1 cut(s) | 3351 |
| BmgBI | CACGTC | 1 cut(s) | 2735 |
| BmiI | GGNNCC | 9 cut(s) | 28, 29, 993, 1635, 1737, 2850, 2999, 3230, 3258 |
| BmrI | ACTGGG | 5 cut(s) | 127, 539, 2412, 2430, 3397 |
| BmuI | ACTGGG | 5 cut(s) | 127, 539, 2412, 2430, 3397 |
| BpiI | GAAGAC | 2 cut(s) | 629, 2382 |
| BpmI | CTGGAG | 1 cut(s) | 3401 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1134, 1740 |
| Bpu14I | TTCGAA | 1 cut(s) | 3013 |
| BpuEI | CTTGAG | 1 cut(s) | 2220 |
| BpuMI | CCSGG | 4 cut(s) | 174, 488, 823, 2368 |
| BsaAI | YACGTR | 4 cut(s) | 1300, 1710, 2186, 2537 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1184 |
| BsaI | GGTCTC | 2 cut(s) | 2431, 3380 |
| BsaWI | WCCGGW | 1 cut(s) | 2268 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 3097, 3115, 3127, 3145 |
| Bse118I | RCCGGY | 1 cut(s) | 145 |
| Bse21I | CCTNAGG | 1 cut(s) | 255 |
| Bse3DI | GCAATG | 1 cut(s) | 2029 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1184 |
| BseAI | TCCGGA | 1 cut(s) | 2268 |
| BseGI | GGATG | 9 cut(s) | 265, 442, 466, 516, 859, 2617, 2722, 2755, 2923 |
| BseJI | GATNNNNATC | 1 cut(s) | 1184 |
| BseMI | GCAATG | 1 cut(s) | 2029 |
| BseMII | CTCAG | 8 cut(s) | 269, 392, 791, 1139, 1619, 1754, 2436, 3267 |
| BseRI | GAGGAG | 3 cut(s) | 1060, 1682, 3398 |
| BseSI | GKGCMC | 3 cut(s) | 30, 957, 2511 |
| BseYI | CCCAGC | 3 cut(s) | 660, 994, 2411 |
| BsgI | GTGCAG | 4 cut(s) | 827, 1197, 1371, 1690 |
| Bsh1236I | CGCG | 3 cut(s) | 2923, 2937, 2943 |
| BsiHKAI | GWGCWC | 3 cut(s) | 344, 957, 1729 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3351 |
| BsiSI | CCGG | 6 cut(s) | 146, 174, 488, 822, 2269, 2367 |
| BsmAI | GTCTC | 5 cut(s) | 1431, 2241, 2431, 3306, 3380 |
| BsmI | GAATGC | 1 cut(s) | 1875 |
| Bso31I | GGTCTC | 2 cut(s) | 2431, 3380 |
| BsoBI | CYCGRG | 1 cut(s) | 3351 |
| Bsp119I | TTCGAA | 1 cut(s) | 3013 |
| Bsp120I | GGGCCC | 1 cut(s) | 26 |
| Bsp1286I | GDGCHC | 7 cut(s) | 30, 344, 957, 1729, 2122, 2511, 3002 |
| Bsp13I | TCCGGA | 1 cut(s) | 2268 |
| Bsp1407I | TGTACA | 2 cut(s) | 1239, 1944 |
| Bsp19I | CCATGG | 1 cut(s) | 65 |
| BspCNI | CTCAG | 8 cut(s) | 268, 391, 790, 1138, 1618, 1753, 2437, 3268 |
| BspEI | TCCGGA | 1 cut(s) | 2268 |
| BspFNI | CGCG | 3 cut(s) | 2923, 2937, 2943 |
| BspHI | TCATGA | 2 cut(s) | 1051, 1395 |
| BspLI | GGNNCC | 9 cut(s) | 28, 29, 993, 1635, 1737, 2850, 2999, 3230, 3258 |
| BspMAI | CTGCAG | 1 cut(s) | 612 |
| BspPI | GGATC | 6 cut(s) | 41, 1546, 2104, 2692, 3251, 3264 |
| BspQI | GCTCTTC | 1 cut(s) | 1506 |
| BspT104I | TTCGAA | 1 cut(s) | 3013 |
| BspTNI | GGTCTC | 2 cut(s) | 2431, 3380 |
| BsrDI | GCAATG | 1 cut(s) | 2029 |
| BsrFI | RCCGGY | 1 cut(s) | 145 |
| BsrGI | TGTACA | 2 cut(s) | 1239, 1944 |
| BssAI | RCCGGY | 1 cut(s) | 145 |
| BssSI | CACGAG | 1 cut(s) | 2671 |
| BssT1I | CCWWGG | 1 cut(s) | 65 |
| Bst2BI | CACGAG | 1 cut(s) | 2671 |
| Bst4CI | ACNGT | 8 cut(s) | 968, 1244, 1392, 1590, 1621, 2061, 3010, 3194 |
| Bst6I | CTCTTC | 1 cut(s) | 1506 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 316, 436, 460, 607 |
| BstAUI | TGTACA | 2 cut(s) | 1239, 1944 |
| BstBAI | YACGTR | 4 cut(s) | 1300, 1710, 2186, 2537 |
| BstBI | TTCGAA | 1 cut(s) | 3013 |
| BstDSI | CCRYGG | 4 cut(s) | 65, 2314, 2791, 3145 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3291 |
| BstF5I | GGATG | 9 cut(s) | 265, 442, 466, 516, 859, 2617, 2722, 2755, 2923 |
| BstFNI | CGCG | 3 cut(s) | 2923, 2937, 2943 |
| BstHHI | GCGC | 1 cut(s) | 2923 |
| BstMAI | GTCTC | 5 cut(s) | 1431, 2241, 2431, 3306, 3380 |
| BstNSI | RCATGY | 2 cut(s) | 1231, 1240 |
| BstSFI | CTRYAG | 3 cut(s) | 608, 3139, 3163 |
| BstSLI | GKGCMC | 3 cut(s) | 30, 957, 2511 |
| BstSNI | TACGTA | 1 cut(s) | 1300 |
| BstUI | CGCG | 3 cut(s) | 2923, 2937, 2943 |
| BstV2I | GAAGAC | 2 cut(s) | 629, 2382 |
| BstX2I | RGATCY | 4 cut(s) | 1538, 2109, 2684, 3256 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 881, 2393 |
| BstYI | RGATCY | 4 cut(s) | 1538, 2109, 2684, 3256 |
| Bsu36I | CCTNAGG | 1 cut(s) | 255 |
| BsuI | GTATCC | 3 cut(s) | 291, 1711, 1849 |
| BtgI | CCRYGG | 4 cut(s) | 65, 2314, 2791, 3145 |
| BtrI | CACGTC | 1 cut(s) | 2735 |
| BtsCI | GGATG | 9 cut(s) | 265, 442, 466, 516, 859, 2617, 2722, 2755, 2923 |
| BtsI | GCAGTG | 1 cut(s) | 53 |
| BtsIMutI | CAGTG | 4 cut(s) | 53, 1195, 1595, 1626 |
| CaiI | CAGNNNCTG | 4 cut(s) | 23, 944, 3275, 3379 |
| CciI | TCATGA | 2 cut(s) | 1051, 1395 |
| CfoI | GCGC | 1 cut(s) | 2923 |
| Cfr10I | RCCGGY | 1 cut(s) | 145 |
| CseI | GACGC | 3 cut(s) | 2943, 2949, 3338 |
| Csp6I | GTAC | 7 cut(s) | 836, 1240, 1945, 2199, 2519, 2905, 3366 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 2287, 2322, 2710, 2743, 2745, 2778 |
| CviQI | GTAC | 7 cut(s) | 836, 1240, 1945, 2199, 2519, 2905, 3366 |
| DraIII | CACNNNGTG | 1 cut(s) | 3405 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3123 |
| EaeI | YGGCCR | 3 cut(s) | 406, 922, 1831 |
| Eam1104I | CTCTTC | 1 cut(s) | 1506 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3123 |
| EarI | CTCTTC | 1 cut(s) | 1506 |
| EciI | GGCGGA | 2 cut(s) | 150, 1410 |
| Ecl136II | GAGCTC | 2 cut(s) | 342, 1727 |
| Eco105I | TACGTA | 1 cut(s) | 1300 |
| Eco130I | CCWWGG | 1 cut(s) | 65 |
| Eco24I | GRGCYC | 5 cut(s) | 30, 344, 1729, 2122, 3002 |
| Eco31I | GGTCTC | 2 cut(s) | 2431, 3380 |
| Eco47I | GGWCC | 7 cut(s) | 991, 1259, 1304, 1736, 2765, 2849, 3290 |
| Eco53kI | GAGCTC | 2 cut(s) | 342, 1727 |
| Eco57I | CTGAAG | 1 cut(s) | 816 |
| Eco72I | CACGTG | 1 cut(s) | 1710 |
| Eco81I | CCTNAGG | 1 cut(s) | 255 |
| Eco88I | CYCGRG | 1 cut(s) | 3351 |
| EcoICRI | GAGCTC | 2 cut(s) | 342, 1727 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3291 |
| EcoO109I | RGGNCCY | 4 cut(s) | 27, 1736, 2849, 3228 |
| EcoT14I | CCWWGG | 1 cut(s) | 65 |
| EcoT22I | ATGCAT | 1 cut(s) | 1233 |
| EcoT38I | GRGCYC | 5 cut(s) | 30, 344, 1729, 2122, 3002 |
| ErhI | CCWWGG | 1 cut(s) | 65 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1329, 1361, 1827, 1859 |
| FauNDI | CATATG | 1 cut(s) | 432 |
| FbaI | TGATCA | 2 cut(s) | 2173, 3235 |
| FblI | GTMKAC | 1 cut(s) | 3327 |
| FokI | GGATG | 9 cut(s) | 272, 429, 453, 503, 846, 2624, 2729, 2762, 2930 |
| FriOI | GRGCYC | 5 cut(s) | 30, 344, 1729, 2122, 3002 |
| FspBI | CTAG | 8 cut(s) | 972, 1218, 1320, 1754, 2486, 2769, 3171, 3207 |
| GlaI | GCGC | 1 cut(s) | 2922 |
| GsaI | CCCAGC | 3 cut(s) | 664, 998, 2415 |
| GsuI | CTGGAG | 1 cut(s) | 3401 |
| HapII | CCGG | 6 cut(s) | 146, 174, 488, 822, 2269, 2367 |
| HgaI | GACGC | 3 cut(s) | 2943, 2949, 3338 |
| HhaI | GCGC | 1 cut(s) | 2923 |
| Hin6I | GCGC | 1 cut(s) | 2921 |
| HinP1I | GCGC | 1 cut(s) | 2921 |
| HincII | GTYRAC | 2 cut(s) | 2350, 3328 |
| HindII | GTYRAC | 2 cut(s) | 2350, 3328 |
| HindIII | AAGCTT | 2 cut(s) | 1136, 1338 |
| HpaI | GTTAAC | 1 cut(s) | 2350 |
| HpaII | CCGG | 6 cut(s) | 146, 174, 488, 822, 2269, 2367 |
| HphI | GGTGA | 6 cut(s) | 1297, 1320, 2023, 2237, 2252, 3391 |
| Hpy166II | GTNNAC | 8 cut(s) | 955, 1262, 1912, 1947, 2350, 2386, 2732, 3328 |
| Hpy188I | TCNGA | 8 cut(s) | 1224, 1608, 2446, 2997, 3111, 3135, 3240, 3277 |
| Hpy188III | TCNNGA | 9 cut(s) | 116, 257, 939, 1052, 1396, 1542, 2269, 2486, 3269 |
| Hpy8I | GTNNAC | 8 cut(s) | 955, 1262, 1912, 1947, 2350, 2386, 2732, 3328 |
| Hpy99I | CGWCG | 3 cut(s) | 3099, 3189, 3332 |
| HpyAV | CCTTC | 9 cut(s) | 64, 873, 921, 1103, 1302, 1582, 1853, 2922, 3247 |
| HpyCH4III | ACNGT | 8 cut(s) | 968, 1244, 1392, 1590, 1621, 2061, 3010, 3194 |
| HpyCH4IV | ACGT | 7 cut(s) | 1299, 1709, 2185, 2197, 2304, 2536, 2734 |
| HpySE526I | ACGT | 7 cut(s) | 1299, 1709, 2185, 2197, 2304, 2536, 2734 |
| HspAI | GCGC | 1 cut(s) | 2921 |
| Kpn2I | TCCGGA | 1 cut(s) | 2268 |
| KroI | GCCGGC | 1 cut(s) | 145 |
| KroNI | GCCGGC | 1 cut(s) | 147 |
| Ksp22I | TGATCA | 2 cut(s) | 2173, 3235 |
| KspAI | GTTAAC | 1 cut(s) | 2350 |
| LguI | GCTCTTC | 1 cut(s) | 1506 |
| MaeI | CTAG | 8 cut(s) | 972, 1218, 1320, 1754, 2486, 2769, 3171, 3207 |
| MaeII | ACGT | 7 cut(s) | 1299, 1709, 2185, 2197, 2304, 2536, 2734 |
| MaeIII | GTNAC | 5 cut(s) | 414, 1100, 1360, 2225, 3188 |
| MflI | RGATCY | 4 cut(s) | 1538, 2109, 2684, 3256 |
| MhlI | GDGCHC | 7 cut(s) | 30, 344, 957, 1729, 2122, 2511, 3002 |
| MlsI | TGGCCA | 2 cut(s) | 924, 1833 |
| MluNI | TGGCCA | 2 cut(s) | 924, 1833 |
| MlyI | GAGTC | 6 cut(s) | 559, 664, 1057, 2579, 3115, 3133 |
| MmeI | TCCRAC | 6 cut(s) | 1057, 1661, 2975, 3089, 3095, 3113 |
| Mox20I | TGGCCA | 2 cut(s) | 924, 1833 |
| Mph1103I | ATGCAT | 1 cut(s) | 1233 |
| MroI | TCCGGA | 1 cut(s) | 2268 |
| MroNI | GCCGGC | 1 cut(s) | 145 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2965, 3009 |
| MscI | TGGCCA | 2 cut(s) | 924, 1833 |
| MseI | TTAA | 7 cut(s) | 1040, 1094, 1824, 1998, 2258, 2349, 2474 |
| MslI | CAYNNNNRTG | 2 cut(s) | 95, 1486 |
| Msp20I | TGGCCA | 2 cut(s) | 924, 1833 |
| MspA1I | CMGCKG | 2 cut(s) | 11, 2468 |
| MspI | CCGG | 6 cut(s) | 146, 174, 488, 822, 2269, 2367 |
| Mva1269I | GAATGC | 1 cut(s) | 1875 |
| MvnI | CGCG | 3 cut(s) | 2923, 2937, 2943 |
| NaeI | GCCGGC | 1 cut(s) | 147 |
| NciI | CCSGG | 4 cut(s) | 174, 488, 823, 2368 |
| NcoI | CCATGG | 1 cut(s) | 65 |
| NdeI | CATATG | 1 cut(s) | 432 |
| NgoMIV | GCCGGC | 1 cut(s) | 145 |
| NlaIV | GGNNCC | 9 cut(s) | 28, 29, 993, 1635, 1737, 2850, 2999, 3230, 3258 |
| NmuCI | GTSAC | 2 cut(s) | 414, 2225 |
| NsiI | ATGCAT | 1 cut(s) | 1233 |
| NspI | RCATGY | 2 cut(s) | 1231, 1240 |
| NspV | TTCGAA | 1 cut(s) | 3013 |
| OliI | CACNNNNGTG | 1 cut(s) | 95 |
| PaeI | GCATGC | 1 cut(s) | 1231 |
| PagI | TCATGA | 2 cut(s) | 1051, 1395 |
| PasI | CCCWGGG | 1 cut(s) | 643 |
| PciI | ACATGT | 1 cut(s) | 1236 |
| PciSI | GCTCTTC | 1 cut(s) | 1506 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 236, 3094 |
| PctI | GAATGC | 1 cut(s) | 1875 |
| PdiI | GCCGGC | 1 cut(s) | 147 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2965, 3009 |
| PfeI | GAWTC | 7 cut(s) | 112, 214, 811, 1185, 2949, 2966, 3272 |
| PflFI | GACNNNGTC | 2 cut(s) | 2252, 2381 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 359, 529 |
| PleI | GAGTC | 6 cut(s) | 558, 664, 1056, 2579, 3114, 3132 |
| PmaCI | CACGTG | 1 cut(s) | 1710 |
| PmlI | CACGTG | 1 cut(s) | 1710 |
| PpsI | GAGTC | 6 cut(s) | 558, 664, 1056, 2579, 3114, 3132 |
| Ppu21I | YACGTR | 4 cut(s) | 1300, 1710, 2186, 2537 |
| PpuMI | RGGWCCY | 2 cut(s) | 1736, 2849 |
| PscI | ACATGT | 1 cut(s) | 1236 |
| PshBI | ATTAAT | 1 cut(s) | 1824 |
| Psp124BI | GAGCTC | 2 cut(s) | 344, 1729 |
| Psp5II | RGGWCCY | 2 cut(s) | 1736, 2849 |
| PspCI | CACGTG | 1 cut(s) | 1710 |
| PspFI | CCCAGC | 3 cut(s) | 660, 994, 2411 |
| PspN4I | GGNNCC | 9 cut(s) | 28, 29, 993, 1635, 1737, 2850, 2999, 3230, 3258 |
| PspOMI | GGGCCC | 1 cut(s) | 26 |
| PspPPI | RGGWCCY | 2 cut(s) | 1736, 2849 |
| PstI | CTGCAG | 1 cut(s) | 612 |
| PstNI | CAGNNNCTG | 4 cut(s) | 23, 944, 3275, 3379 |
| PsuI | RGATCY | 4 cut(s) | 1538, 2109, 2684, 3256 |
| PsyI | GACNNNGTC | 2 cut(s) | 2252, 2381 |
| PvuII | CAGCTG | 1 cut(s) | 2468 |
| RsaI | GTAC | 7 cut(s) | 837, 1241, 1946, 2200, 2520, 2906, 3367 |
| RsaNI | GTAC | 7 cut(s) | 836, 1240, 1945, 2199, 2519, 2905, 3366 |
| RseI | CAYNNNNRTG | 2 cut(s) | 95, 1486 |
| SacI | GAGCTC | 2 cut(s) | 344, 1729 |
| SalI | GTCGAC | 1 cut(s) | 3326 |
| SapI | GCTCTTC | 1 cut(s) | 1506 |
| SaqAI | TTAA | 7 cut(s) | 1040, 1094, 1824, 1998, 2258, 2349, 2474 |
| ScaI | AGTACT | 1 cut(s) | 3367 |
| SchI | GAGTC | 6 cut(s) | 559, 664, 1057, 2579, 3115, 3133 |
| SduI | GDGCHC | 7 cut(s) | 30, 344, 957, 1729, 2122, 2511, 3002 |
| SfcI | CTRYAG | 3 cut(s) | 608, 3139, 3163 |
| SfuI | TTCGAA | 1 cut(s) | 3013 |
| SinI | GGWCC | 7 cut(s) | 991, 1259, 1304, 1736, 2765, 2849, 3290 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 95, 1486 |
| SmlI | CTYRAG | 1 cut(s) | 2235 |
| SmoI | CTYRAG | 1 cut(s) | 2235 |
| SnaBI | TACGTA | 1 cut(s) | 1300 |
| SphI | GCATGC | 1 cut(s) | 1231 |
| SspI | AATATT | 3 cut(s) | 590, 1088, 2017 |
| SspMI | CTAG | 8 cut(s) | 972, 1218, 1320, 1754, 2486, 2769, 3171, 3207 |
| SstI | GAGCTC | 2 cut(s) | 344, 1729 |
| StyI | CCWWGG | 1 cut(s) | 65 |
| TaaI | ACNGT | 8 cut(s) | 968, 1244, 1392, 1590, 1621, 2061, 3010, 3194 |
| TaiI | ACGT | 7 cut(s) | 1302, 1712, 2188, 2200, 2307, 2539, 2737 |
| TaqI | TCGA | 5 cut(s) | 230, 1867, 2952, 3013, 3327 |
| TatI | WGTACW | 4 cut(s) | 835, 1239, 1944, 3365 |
| TauI | GCSGC | 4 cut(s) | 888, 2604, 2637, 3084 |
| TfiI | GAWTC | 7 cut(s) | 112, 214, 811, 1185, 2949, 2966, 3272 |
| Tru1I | TTAA | 7 cut(s) | 1040, 1094, 1824, 1998, 2258, 2349, 2474 |
| Tru9I | TTAA | 7 cut(s) | 1040, 1094, 1824, 1998, 2258, 2349, 2474 |
| TscAI | CASTG | 4 cut(s) | 60, 1195, 1595, 1626 |
| TseFI | GTSAC | 2 cut(s) | 414, 2225 |
| Tsp45I | GTSAC | 2 cut(s) | 414, 2225 |
| TspRI | CASTG | 4 cut(s) | 60, 1195, 1595, 1626 |
| Tth111I | GACNNNGTC | 2 cut(s) | 2252, 2381 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 359, 529 |
| VneI | GTGCAC | 1 cut(s) | 953 |
| VpaK11BI | GGWCC | 7 cut(s) | 991, 1259, 1304, 1736, 2765, 2849, 3290 |
| VspI | ATTAAT | 1 cut(s) | 1824 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3291 |
| XapI | RAATTY | 3 cut(s) | 480, 1679, 1896 |
| XbaI | TCTAGA | 1 cut(s) | 2485 |
| XceI | RCATGY | 2 cut(s) | 1231, 1240 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 202, 1073, 2015 |
| XmiI | GTMKAC | 1 cut(s) | 3327 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2965, 3009 |
| XspI | CTAG | 8 cut(s) | 972, 1218, 1320, 1754, 2486, 2769, 3171, 3207 |
| ZrmI | AGTACT | 1 cut(s) | 3367 |
| Zsp2I | ATGCAT | 1 cut(s) | 1233 |