Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008446

Physical Location & Seq

Genomic Coordinates Forward (+)

37064853 .. 37066478

Gene Structure 1626 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0213500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1545 bp

ATGGGGATATTCAAAGCTTTGTTCATTTTCTCTCTTTTCCTTGCCTCCATCTCTGTGTCTCTTAGCTATCAGGATGACCCTCAACAGCAGTTCCAGCAATGCCAGCACCGCTGCCAGCAGGAGATGCCCCGGGGGTTGCAACAGCAGCAGTGCCAGCAAGAATGCCGAGAGAGGATGGAGGAGCAGCAACAGCAGCAGCAGGGAGGCCGCGGGGGGCGAGGACAACAAGGTGAACAGAGATATAAGCAGTGCCTGCGGAGGTGCGACCAACAGCAACCCTACCGCGGACAAGAGATTCAACAATGTCGTCAACAATGCGGGCAGCAATTGAGCCACCAAGAGCGTCAACAAATATGCCAGCAGCACTGTCAGAGGCAACAGAGTGGCGATTGGCAACGGCAACAACAGTGCCAATCAAGGTGCCAGCAGCAGTTGCAGCAAGGAAGAGAAATCGAACAAAACATGATTAACCCAAGGAGAGATCCTGAACAGAAATTTGAAGAATGCCAGCAGAGCTGTCAATCTAGGCAACGTGGTGGCCGGCAACAACAGCAACAATGTCGTCAGCAGTGCGCACAGCAATTGAGCCAACAGGAGCGTCAGCAGATCTGCCAGCAGCGTTGCCAGAGACAACAAGGTGGGGACTGGCAACAACAGCAACATTGCCAAAGAAGGTGCGAGCAACAACTACAACAAGGAGAACAAGACGTAGACATGAACCCGCAATCAAGAGATCCCGAGCAGAAATTTGAGCAATGCCAGCAAAGATGCCAATCAAGGCAACAAGGCCAACAGCAGCAGTGCCGTCAACAATGCGGACAACAGTTGAGCCAACAGGAGCGTCAGCAGATCTGCCAGCAGCGTTGCCAGAGACAACAAGGTGGGGATTGGCAACAACAACAGCATTGCCAAAGAAGGTGCGAGGAACAACTACAACAAGGAGAACGATACACAGACATGAACCCGCAATCAAGAGATCCCGAGCAAAAATTTGAGCAGTGCCAGCAAAGATGCCAATCTAGGCAACATGGACAACAAGGTCAACAACAACAGCAGCAGTGCCGTCAACAATGCGGACAACAATTGAGCCAATACGAGCGTCAACAGGTGTGCCAACAACGTTGTCAGAGGCAACAAGGTGGGGATCGGCAACAACAACAGCATTGCCAAAGAAGGTGCGAGCAACAGCTACAAGAAGGAGAACAATACATAGACATGAACCCGCAATCCAGAGATCCCGAGCAGAAATTTGAGCAATGCCAGCAAAGATGCCAATCAAGGCAACAAGGACAACAAGGCCAACAAGGCCAACAACAACAATGTCGTCAACAGTGTGCACAACAATTGAGCCGATACGAACGACAACAAATCTGCCAAAATCGTTGCCAGAGGCAACAAGGTGGGGACTGGCAACAACAACAGCATTGCCAAAGAAGGTGCGAGCAACAACTTGAACAAGGAGACTTTGACATTAACGGCGACGAACAACTGGAACAGGGTCAGAGCCTACCCTTATCTTCAATTTTGGACTTCGCAGGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 ko05202 ko05205 map03040 map05202 map05205

Pfam Domains

Protein Families

DEAD Helicase_C WW

Protein Analysis

514

Amino Acids

62.01

Weight (kDa)

8.27

Isoelectric Point (pI)

88.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vicilin_N	PF04702	24 - 150	5.7e-08	Vicilin N terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06480 AT3G06480
fragaria_vesca	FvH4_4g21040
malus_domestica	MD13G1145900.v1.1 MD16G1139800.v1.1 MD16G1139900.v1.1
prunus_persica	Prupe.1G109600_v2.0.a1
pyrus_communis	pycom13g12540 pycom16g12400
rosa_chinensis	RchiOBHm_Chr2g0174651 RchiOBHm_Chr4g0426571
rosa_laevigata	RLG00000007289
rosa_multiflora	Rmu_co8268839.1_g000001 Rmu_sc0001821.1_g000009 Rmu_sc0007189.1_g000006
rosa_roxburghii	Rroxscaffold_5G00368580
rosa_rugosa	Rorug04G0213500
rosa_samantha	Rh4AG268700 Rh4BG275000 Rh4CG289300 Rh4DG271800
rosa_wichuraiana	Rw2G054030 Rw4G023310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1038
Acc16I	TGCGCA	1 cut(s)	574
AccB1I	GGYRCC	1 cut(s)	420
AccI	GTMKAC	1 cut(s)	711
AccII	CGCG	2 cut(s)	210, 285
AclI	AACGTT	1 cut(s)	1120
AclWI	GGATC	5 cut(s)	476, 728, 971, 1152, 1229
AcoI	YGGCCR	1 cut(s)	538
AcsI	RAATTY	4 cut(s)	494, 746, 989, 1247
AfiI	CCNNNNNNNGG	1 cut(s)	284
AgsI	TTSAA	5 cut(s)	13, 299, 500, 1454, 1521
AloI	GAACNNNNNNTCC	2 cut(s)	1211, 1243
AluBI	AGCT	4 cut(s)	17, 66, 516, 1189
AluI	AGCT	4 cut(s)	17, 66, 516, 1189
Alw21I	GWGCWC	1 cut(s)	1339
Alw26I	GTCTC	4 cut(s)	63, 622, 865, 1455
Alw44I	GTGCAC	1 cut(s)	1335
AlwI	GGATC	5 cut(s)	476, 728, 971, 1152, 1229
AlwNI	CAGNNNCTG	1 cut(s)	253
Ama87I	CYCGRG	4 cut(s)	129, 737, 980, 1238
AoxI	GGCC	5 cut(s)	205, 538, 787, 1297, 1306
ApaLI	GTGCAC	1 cut(s)	1335
ApoI	RAATTY	4 cut(s)	494, 746, 989, 1247
AspLEI	GCGC	1 cut(s)	575
AsuC2I	CCSGG	2 cut(s)	130, 131
AsuHPI	GGTGA	1 cut(s)	242
AvaI	CYCGRG	4 cut(s)	129, 737, 980, 1238
BaeGI	GKGCMC	1 cut(s)	1339
BanI	GGYRCC	1 cut(s)	420
Bbv12I	GWGCWC	1 cut(s)	1339
BccI	CCATC	2 cut(s)	56, 169
BceAI	ACGGC	4 cut(s)	413, 789, 1047, 1492
BcgI	CGANNNNNNTGC	2 cut(s)	542, 576
BcnI	CCSGG	2 cut(s)	130, 131
BcoDI	GTCTC	4 cut(s)	63, 622, 865, 1455
BfaI	CTAG	2 cut(s)	525, 1020
BglI	GCCNNNNNGGC	1 cut(s)	1305
BglII	AGATCT	2 cut(s)	606, 849
Bme1390I	CCNGG	2 cut(s)	130, 131
BmeT110I	CYCGRG	4 cut(s)	129, 737, 980, 1238
BmiI	GGNNCC	1 cut(s)	422
BmrFI	CCNGG	2 cut(s)	130, 131
BmsI	GCATC	4 cut(s)	114, 758, 1001, 1259
BpuMI	CCSGG	2 cut(s)	130, 131
BsaBI	GATNNNNATC	3 cut(s)	772, 1015, 1273
BsaJI	CCNNGG	6 cut(s)	128, 129, 130, 208, 283, 473
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
Bse118I	RCCGGY	1 cut(s)	540
Bse1I	ACTGG	3 cut(s)	650, 1412, 1494
Bse3DI	GCAATG	7 cut(s)	104, 661, 761, 904, 1162, 1262, 1423
Bse8I	GATNNNNATC	3 cut(s)	772, 1015, 1273
BseDI	CCNNGG	6 cut(s)	128, 129, 130, 208, 283, 473
BseGI	GGATG	2 cut(s)	79, 180
BseJI	GATNNNNATC	3 cut(s)	772, 1015, 1273
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseMI	GCAATG	7 cut(s)	104, 661, 761, 904, 1162, 1262, 1423
BseNI	ACTGG	3 cut(s)	650, 1412, 1494
BseRI	GAGGAG	1 cut(s)	194
BseSI	GKGCMC	1 cut(s)	1339
Bsh1236I	CGCG	2 cut(s)	210, 285
BshFI	GGCC	5 cut(s)	207, 540, 789, 1299, 1308
BshNI	GGYRCC	1 cut(s)	420
BsiHKAI	GWGCWC	1 cut(s)	1339
BsiHKCI	CYCGRG	4 cut(s)	129, 737, 980, 1238
BsiSI	CCGG	2 cut(s)	130, 541
BslFI	GGGAC	2 cut(s)	656, 1418
BslI	CCNNNNNNNGG	1 cut(s)	284
BsmAI	GTCTC	4 cut(s)	63, 622, 865, 1455
BsmFI	GGGAC	2 cut(s)	656, 1418
BsmI	GAATGC	2 cut(s)	167, 509
BsnI	GGCC	5 cut(s)	207, 540, 789, 1299, 1308
BsoBI	CYCGRG	4 cut(s)	129, 737, 980, 1238
Bsp1286I	GDGCHC	1 cut(s)	1339
Bsp143I	GATC	7 cut(s)	481, 606, 733, 849, 976, 1144, 1234
BspANI	GGCC	5 cut(s)	207, 540, 789, 1299, 1308
BspFNI	CGCG	2 cut(s)	210, 285
BspLI	GGNNCC	1 cut(s)	422
BspPI	GGATC	5 cut(s)	476, 728, 971, 1152, 1229
BspT107I	GGYRCC	1 cut(s)	420
BsrDI	GCAATG	7 cut(s)	104, 661, 761, 904, 1162, 1262, 1423
BsrFI	RCCGGY	1 cut(s)	540
BsrI	ACTGG	3 cut(s)	650, 1412, 1494
BssAI	RCCGGY	1 cut(s)	540
BssECI	CCNNGG	6 cut(s)	128, 129, 130, 208, 283, 473
BssMI	GATC	7 cut(s)	481, 606, 733, 849, 976, 1144, 1234
BssT1I	CCWWGG	1 cut(s)	473
Bst4CI	ACNGT	4 cut(s)	368, 408, 825, 1332
Bst6I	CTCTTC	1 cut(s)	439
BstAPI	GCANNNNNTGC	3 cut(s)	124, 253, 433
BstDEI	CTNAG	1 cut(s)	62
BstDSI	CCRYGG	2 cut(s)	208, 283
BstF5I	GGATG	2 cut(s)	79, 180
BstFNI	CGCG	2 cut(s)	210, 285
BstHHI	GCGC	1 cut(s)	575
BstKTI	GATC	7 cut(s)	484, 609, 736, 852, 979, 1147, 1237
BstMAI	GTCTC	4 cut(s)	63, 622, 865, 1455
BstMBI	GATC	7 cut(s)	481, 606, 733, 849, 976, 1144, 1234
BstSCI	CCNGG	2 cut(s)	128, 129
BstSLI	GKGCMC	1 cut(s)	1339
BstUI	CGCG	2 cut(s)	210, 285
BstX2I	RGATCY	6 cut(s)	481, 606, 733, 849, 976, 1234
BstYI	RGATCY	6 cut(s)	481, 606, 733, 849, 976, 1234
BsuRI	GGCC	5 cut(s)	207, 540, 789, 1299, 1308
BtgI	CCRYGG	2 cut(s)	208, 283
BtsCI	GGATG	2 cut(s)	79, 180
BtsI	GCAGTG	6 cut(s)	155, 254, 575, 806, 1004, 1064
BtsIMutI	CAGTG	9 cut(s)	155, 254, 364, 413, 575, 806, 1004, 1064, 1337
CaiI	CAGNNNCTG	1 cut(s)	253
CfoI	GCGC	1 cut(s)	575
Cfr10I	RCCGGY	1 cut(s)	540
Cfr42I	CCGCGG	2 cut(s)	211, 286
Cfr9I	CCCGGG	1 cut(s)	129
CseI	GACGC	4 cut(s)	332, 587, 830, 1088
CviAII	CATG	5 cut(s)	463, 715, 958, 1028, 1216
DdeI	CTNAG	1 cut(s)	62
DpnI	GATC	7 cut(s)	483, 608, 735, 851, 978, 1146, 1236
DpnII	GATC	7 cut(s)	481, 606, 733, 849, 976, 1144, 1234
DrdI	GACNNNNNNGTC	1 cut(s)	1038
DseDI	GACNNNNNNGTC	1 cut(s)	1038
EaeI	YGGCCR	1 cut(s)	538
Eam1104I	CTCTTC	1 cut(s)	439
EarI	CTCTTC	1 cut(s)	439
Eco130I	CCWWGG	1 cut(s)	473
Eco88I	CYCGRG	4 cut(s)	129, 737, 980, 1238
EcoT14I	CCWWGG	1 cut(s)	473
ErhI	CCWWGG	1 cut(s)	473
FaeI	CATG	5 cut(s)	466, 718, 961, 1031, 1219
FaiI	YATR	8 cut(s)	243, 355, 464, 716, 959, 1029, 1211, 1217
FaqI	GGGAC	2 cut(s)	656, 1418
FatI	CATG	5 cut(s)	462, 714, 957, 1027, 1215
FauI	CCCGC	5 cut(s)	203, 311, 729, 972, 1230
FblI	GTMKAC	1 cut(s)	711
FokI	GGATG	2 cut(s)	86, 187
FspAI	RTGCGCAY	1 cut(s)	574
FspBI	CTAG	2 cut(s)	525, 1020
FspI	TGCGCA	1 cut(s)	574
GlaI	GCGC	1 cut(s)	574
HaeIII	GGCC	5 cut(s)	207, 540, 789, 1299, 1308
HapII	CCGG	2 cut(s)	130, 541
HgaI	GACGC	4 cut(s)	332, 587, 830, 1088
HhaI	GCGC	1 cut(s)	575
Hin1II	CATG	5 cut(s)	466, 718, 961, 1031, 1219
Hin6I	GCGC	1 cut(s)	573
HinP1I	GCGC	1 cut(s)	573
HincII	GTYRAC	7 cut(s)	311, 347, 809, 1043, 1067, 1103, 1328
HindII	GTYRAC	7 cut(s)	311, 347, 809, 1043, 1067, 1103, 1328
HindIII	AAGCTT	1 cut(s)	15
HinfI	GANTC	1 cut(s)	295
HpaII	CCGG	2 cut(s)	130, 541
HphI	GGTGA	1 cut(s)	242
Hpy188I	TCNGA	3 cut(s)	372, 1128, 1503
Hpy188III	TCNNGA	8 cut(s)	71, 485, 729, 737, 972, 980, 1230, 1238
Hpy99I	CGWCG	1 cut(s)	1484
HpyAV	CCTTC	5 cut(s)	666, 909, 1167, 1190, 1428
HpyCH4III	ACNGT	4 cut(s)	368, 408, 825, 1332
HpyCH4IV	ACGT	3 cut(s)	532, 708, 1120
HpyCH4V	TGCA	3 cut(s)	139, 436, 1337
HpyF3I	CTNAG	1 cut(s)	62
HpySE526I	ACGT	3 cut(s)	532, 708, 1120
Hsp92II	CATG	5 cut(s)	466, 718, 961, 1031, 1219
HspAI	GCGC	1 cut(s)	573
KroI	GCCGGC	1 cut(s)	540
KroNI	GCCGGC	1 cut(s)	542
KspI	CCGCGG	2 cut(s)	211, 286
Kzo9I	GATC	7 cut(s)	481, 606, 733, 849, 976, 1144, 1234
LmnI	GCTCC	3 cut(s)	181, 595, 838
LweI	GCATC	4 cut(s)	114, 758, 1001, 1259
MaeI	CTAG	2 cut(s)	525, 1020
MaeII	ACGT	3 cut(s)	532, 708, 1120
MalI	GATC	7 cut(s)	483, 608, 735, 851, 978, 1146, 1236
MboI	GATC	7 cut(s)	481, 606, 733, 849, 976, 1144, 1234
MboII	GAAGA	3 cut(s)	456, 512, 1509
MfeI	CAATTG	4 cut(s)	326, 581, 1082, 1343
MflI	RGATCY	6 cut(s)	481, 606, 733, 849, 976, 1234
MhlI	GDGCHC	1 cut(s)	1339
MluCI	AATT	9 cut(s)	326, 494, 581, 746, 989, 1082, 1247, 1343, 1521
MroNI	GCCGGC	1 cut(s)	540
MseI	TTAA	2 cut(s)	468, 1473
MslI	CAYNNNNRTG	3 cut(s)	53, 956, 1214
MspA1I	CMGCKG	3 cut(s)	111, 210, 285
MspI	CCGG	2 cut(s)	130, 541
MspR9I	CCNGG	2 cut(s)	130, 131
MunI	CAATTG	4 cut(s)	326, 581, 1082, 1343
Mva1269I	GAATGC	2 cut(s)	167, 509
MvnI	CGCG	2 cut(s)	210, 285
NaeI	GCCGGC	1 cut(s)	542
NciI	CCSGG	2 cut(s)	130, 131
NdeII	GATC	7 cut(s)	481, 606, 733, 849, 976, 1144, 1234
NgoMIV	GCCGGC	1 cut(s)	540
NlaIII	CATG	5 cut(s)	466, 718, 961, 1031, 1219
NlaIV	GGNNCC	1 cut(s)	422
NmeAIII	GCCGAG	1 cut(s)	191
NsbI	TGCGCA	1 cut(s)	574
PctI	GAATGC	2 cut(s)	167, 509
PdiI	GCCGGC	1 cut(s)	542
PfeI	GAWTC	1 cut(s)	295
Psp1406I	AACGTT	1 cut(s)	1120
PspN4I	GGNNCC	1 cut(s)	422
PstNI	CAGNNNCTG	1 cut(s)	253
PsuI	RGATCY	6 cut(s)	481, 606, 733, 849, 976, 1234
RseI	CAYNNNNRTG	3 cut(s)	53, 956, 1214
SacII	CCGCGG	2 cut(s)	211, 286
SaqAI	TTAA	2 cut(s)	468, 1473
Sau3AI	GATC	7 cut(s)	481, 606, 733, 849, 976, 1144, 1234
ScrFI	CCNGG	2 cut(s)	130, 131
SduI	GDGCHC	1 cut(s)	1339
SfaNI	GCATC	4 cut(s)	114, 758, 1001, 1259
SfiI	GGCCNNNNNGGCC	1 cut(s)	1305
Sfr303I	CCGCGG	2 cut(s)	211, 286
SgrBI	CCGCGG	2 cut(s)	211, 286
SmaI	CCCGGG	1 cut(s)	131
SmiMI	CAYNNNNRTG	3 cut(s)	53, 956, 1214
Sse9I	AATT	9 cut(s)	326, 494, 581, 746, 989, 1082, 1247, 1343, 1521
SspMI	CTAG	2 cut(s)	525, 1020
StyD4I	CCNGG	2 cut(s)	128, 129
StyI	CCWWGG	1 cut(s)	473
TaaI	ACNGT	4 cut(s)	368, 408, 825, 1332
TaiI	ACGT	3 cut(s)	535, 711, 1123
TaqI	TCGA	1 cut(s)	453
TasI	AATT	9 cut(s)	326, 494, 581, 746, 989, 1082, 1247, 1343, 1521
TauI	GCSGC	1 cut(s)	210
TfiI	GAWTC	1 cut(s)	295
Tru1I	TTAA	2 cut(s)	468, 1473
Tru9I	TTAA	2 cut(s)	468, 1473
TscAI	CASTG	9 cut(s)	155, 254, 371, 413, 575, 806, 1004, 1064, 1337
TspDTI	ATGAA	4 cut(s)	13, 731, 974, 1232
TspMI	CCCGGG	1 cut(s)	129
TspRI	CASTG	9 cut(s)	155, 254, 371, 413, 575, 806, 1004, 1064, 1337
VneI	GTGCAC	1 cut(s)	1335
XapI	RAATTY	4 cut(s)	494, 746, 989, 1247
XmaI	CCCGGG	1 cut(s)	129
XmiI	GTMKAC	1 cut(s)	711
XspI	CTAG	2 cut(s)	525, 1020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.