Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003500

Physical Location & Seq

Genomic Coordinates Forward (+)

26446841 .. 26449700

Gene Structure 2860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G253600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCCGAATCAAAACCAGGATTGAGGAAACCTGTATTCACCAAGGTTGCCCAGCTCCGCCCAAGCACCTCAGGGCACACTCTCACGGTAAAGGTTGTTAATACTAAGATGGTATTACAAAAGGGTCGTGCTGATGCCCCTCAAGTACGCCAAATGCGAATTGCTGAATGCTTGGTTGGCGATGAAACCGGATTGATTATCTTTACAGCTAGAAATGATCAAGTGGATTTGGTGAAAGAGGGCTCTACCCTAACCCTGCGTAATGCCAAAATCGACATGTTCAAAGGATCGATGAGACTTGCTGTGGACAGGTGGGGCCGTGTTGAAGTTGCTGAACCTGCTAGTTTTACAGTGAAAGAAGATAACAACCTCTCACTCATTGAATATGAACTTGTCAATGTTGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

15.14

Weight (kDa)

8.79

Isoelectric Point (pI)

35.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10590 AT1G10590 AT1G10590 AT1G23750 AT1G23750
fragaria_vesca	FvH4_4g33300 FvH4_4g34480
malus_domestica	MD13G1092100.v1.1 MD16G1092700.v1.1
prunus_persica	Prupe.1G253600_v2.0.a1
pyrus_communis	pycom16g07910
rosa_chinensis	RchiOBHm_Chr4g0442331 RchiOBHm_Chr4g0443871
rosa_laevigata	RLG00000005882 RLG00000006017
rosa_multiflora	Rmu_sc0000124.1_g000051 Rmu_sc0010179.1_g000002 Rmu_sc0019062.1_g000005 Rmu_sc0042307.1_g000001 Rmu_sc0042318.1_g000001
rosa_roxburghii	Rroxscaffold_5G00383190 Rroxscaffold_5G00384430
rosa_rugosa	Rorug04G0340400 Rorug04G0340400 Rorug04G0340500 Rorug04G0347900.1
rosa_samantha	Rh4AG392100 Rh4AG408500 Rh4BG405600 Rh4BG419500 Rh4CG420700 Rh4CG433500 Rh4DG398800 Rh4DG414500
rosa_wichuraiana	Rw4G035070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	346
AciI	CCGC	1 cut(s)	58
AclWI	GGATC	1 cut(s)	295
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	147
AflIII	ACRYGT	1 cut(s)	276
AgsI	TTSAA	4 cut(s)	283, 326, 383, 404
AjnI	CCWGG	1 cut(s)	16
AjuI	GAANNNNNNNTTGG	2 cut(s)	159, 191
AluBI	AGCT	2 cut(s)	55, 209
AluI	AGCT	2 cut(s)	55, 209
Alw26I	GTCTC	1 cut(s)	289
AlwI	GGATC	1 cut(s)	295
AoxI	GGCC	2 cut(s)	3, 316
AspS9I	GGNCC	1 cut(s)	316
AsuHPI	GGTGA	2 cut(s)	31, 244
AxyI	CCTNAGG	1 cut(s)	70
BaeGI	GKGCMC	1 cut(s)	78
BanII	GRGCYC	1 cut(s)	245
BccI	CCATC	1 cut(s)	103
BceAI	ACGGC	1 cut(s)	303
BciT130I	CCWGG	1 cut(s)	18
BclI	TGATCA	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	289
BfaI	CTAG	2 cut(s)	210, 342
BfuAI	ACCTGC	1 cut(s)	346
Bme1390I	CCNGG	1 cut(s)	18
BmgT120I	GGNCC	1 cut(s)	316
BmiI	GGNNCC	1 cut(s)	317
BmrFI	CCNGG	1 cut(s)	18
BmsI	GCATC	1 cut(s)	124
BpuEI	CTTGAG	1 cut(s)	126
Bsa29I	ATCGAT	1 cut(s)	290
BsaJI	CCNNGG	1 cut(s)	42
BsaWI	WCCGGW	1 cut(s)	188
Bse21I	CCTNAGG	1 cut(s)	70
BseBI	CCWGG	1 cut(s)	18
BseCI	ATCGAT	1 cut(s)	290
BseDI	CCNNGG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	84
BseSI	GKGCMC	1 cut(s)	78
BseYI	CCCAGC	1 cut(s)	51
BshFI	GGCC	2 cut(s)	5, 318
BshVI	ATCGAT	1 cut(s)	290
BsiSI	CCGG	1 cut(s)	189
BsmAI	GTCTC	1 cut(s)	289
BsmI	GAATGC	1 cut(s)	173
BsnI	GGCC	2 cut(s)	5, 318
Bsp1286I	GDGCHC	2 cut(s)	78, 245
Bsp143I	GATC	2 cut(s)	217, 287
BspACI	CCGC	1 cut(s)	58
BspANI	GGCC	2 cut(s)	5, 318
BspCNI	CTCAG	1 cut(s)	83
BspDI	ATCGAT	1 cut(s)	290
BspLI	GGNNCC	1 cut(s)	317
BspMI	ACCTGC	1 cut(s)	346
BspPI	GGATC	1 cut(s)	295
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	2 cut(s)	217, 287
BssT1I	CCWWGG	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	18
Bst4CI	ACNGT	2 cut(s)	88, 352
Bst6I	CTCTTC	1 cut(s)	399
BstDEI	CTNAG	2 cut(s)	70, 105
BstKTI	GATC	2 cut(s)	220, 290
BstMAI	GTCTC	1 cut(s)	289
BstMBI	GATC	2 cut(s)	217, 287
BstMWI	GCNNNNNNNGC	2 cut(s)	177, 338
BstNI	CCWGG	1 cut(s)	18
BstNSI	RCATGY	1 cut(s)	280
BstSCI	CCNGG	1 cut(s)	16
BstSLI	GKGCMC	1 cut(s)	78
Bsu15I	ATCGAT	1 cut(s)	290
Bsu36I	CCTNAGG	1 cut(s)	70
BsuRI	GGCC	2 cut(s)	5, 318
BsuTUI	ATCGAT	1 cut(s)	290
BtgZI	GCGATG	1 cut(s)	195
BtsIMutI	CAGTG	1 cut(s)	357
BveI	ACCTGC	1 cut(s)	346
Cfr13I	GGNCC	1 cut(s)	316
ClaI	ATCGAT	1 cut(s)	290
Csp6I	GTAC	1 cut(s)	146
CviAII	CATG	1 cut(s)	277
CviJI	RGCY	5 cut(s)	5, 55, 209, 243, 318
CviKI_1	RGCY	5 cut(s)	5, 55, 209, 243, 318
CviQI	GTAC	1 cut(s)	146
DdeI	CTNAG	2 cut(s)	70, 105
DpnI	GATC	2 cut(s)	219, 289
DpnII	GATC	2 cut(s)	217, 287
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
EciI	GGCGGA	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	42
Eco24I	GRGCYC	1 cut(s)	245
Eco81I	CCTNAGG	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	16
EcoT14I	CCWWGG	1 cut(s)	42
EcoT38I	GRGCYC	1 cut(s)	245
ErhI	CCWWGG	1 cut(s)	42
FaeI	CATG	1 cut(s)	280
FaiI	YATR	2 cut(s)	278, 387
FatI	CATG	1 cut(s)	276
FbaI	TGATCA	1 cut(s)	217
FriOI	GRGCYC	1 cut(s)	245
FspBI	CTAG	2 cut(s)	210, 342
GsaI	CCCAGC	1 cut(s)	55
HaeIII	GGCC	2 cut(s)	5, 318
HapII	CCGG	1 cut(s)	189
Hin1II	CATG	1 cut(s)	280
HinfI	GANTC	1 cut(s)	8
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	2 cut(s)	31, 244
Hpy166II	GTNNAC	1 cut(s)	307
Hpy8I	GTNNAC	1 cut(s)	307
HpyCH4III	ACNGT	2 cut(s)	88, 352
HpyF10VI	GCNNNNNNNGC	2 cut(s)	177, 338
HpyF3I	CTNAG	2 cut(s)	70, 105
Hsp92II	CATG	1 cut(s)	280
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	217, 287
LmnI	GCTCC	1 cut(s)	60
LpnPI	CCDG	9 cut(s)	3, 30, 45, 57, 65, 202, 269, 295, 351
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	2 cut(s)	210, 342
MalI	GATC	2 cut(s)	219, 289
MboI	GATC	2 cut(s)	217, 287
MboII	GAAGA	1 cut(s)	371
MhlI	GDGCHC	2 cut(s)	78, 245
MluCI	AATT	1 cut(s)	159
MnlI	CCTC	5 cut(s)	18, 79, 150, 232, 380
MseI	TTAA	1 cut(s)	99
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	1 cut(s)	18
Mva1269I	GAATGC	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	18
MwoI	GCNNNNNNNGC	2 cut(s)	177, 338
NdeII	GATC	2 cut(s)	217, 287
NlaIII	CATG	1 cut(s)	280
NlaIV	GGNNCC	1 cut(s)	317
NspI	RCATGY	1 cut(s)	280
PciI	ACATGT	1 cut(s)	276
PcsI	WCGNNNNNNNCGW	1 cut(s)	154
PctI	GAATGC	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	8
PscI	ACATGT	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	16
PspFI	CCCAGC	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	317
PspPI	GGNCC	1 cut(s)	316
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
SaqAI	TTAA	1 cut(s)	99
Sau3AI	GATC	2 cut(s)	217, 287
Sau96I	GGNCC	1 cut(s)	316
ScrFI	CCNGG	1 cut(s)	18
SduI	GDGCHC	2 cut(s)	78, 245
SetI	ASST	9 cut(s)	34, 48, 57, 71, 96, 211, 314, 340, 372
SfaNI	GCATC	1 cut(s)	124
SmlI	CTYRAG	1 cut(s)	141
SmoI	CTYRAG	1 cut(s)	141
Sse9I	AATT	1 cut(s)	159
SsiI	CCGC	1 cut(s)	58
SspMI	CTAG	2 cut(s)	210, 342
StyD4I	CCNGG	1 cut(s)	16
StyI	CCWWGG	1 cut(s)	42
TaaI	ACNGT	2 cut(s)	88, 352
TaqI	TCGA	2 cut(s)	273, 290
TasI	AATT	1 cut(s)	159
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	1 cut(s)	357
TspDTI	ATGAA	2 cut(s)	198, 402
TspRI	CASTG	1 cut(s)	357
XceI	RCATGY	1 cut(s)	280
XspI	CTAG	2 cut(s)	210, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.