Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042307.1

Orthogroup ID

OG0003500

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 559

Gene Structure 559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042307.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

gtcttttctcaaatggcagactcgaaacaagcactgaggaaaccaaccttcacaaaggtcgggcagctccgtccaagcacctccggtcacactctcactgtaaaggttgttagtactaagatggtattgcagaagggacgtgctgatggccctcaagtacgccaaatgcgaattgctgaatgcttggttggcgatgaaacgggaatgataatcttcacagctcgaaacgatcaaggtgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

No domains found.

Protein Analysis

80

Amino Acids

8.78

Weight (kDa)

10.01

Isoelectric Point (pI)

39.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10590 AT1G10590 AT1G10590 AT1G23750 AT1G23750
fragaria_vesca	FvH4_4g33300 FvH4_4g34480
malus_domestica	MD13G1092100.v1.1 MD16G1092700.v1.1
prunus_persica	Prupe.1G253600_v2.0.a1
pyrus_communis	pycom16g07910
rosa_chinensis	RchiOBHm_Chr4g0442331 RchiOBHm_Chr4g0443871
rosa_laevigata	RLG00000005882 RLG00000006017
rosa_multiflora	Rmu_sc0000124.1_g000051 Rmu_sc0010179.1_g000002 Rmu_sc0019062.1_g000005 Rmu_sc0042307.1_g000001 Rmu_sc0042318.1_g000001
rosa_roxburghii	Rroxscaffold_5G00383190 Rroxscaffold_5G00384430
rosa_rugosa	Rorug04G0340400 Rorug04G0340400 Rorug04G0340500 Rorug04G0347900.1
rosa_samantha	Rh4AG392100 Rh4AG408500 Rh4BG405600 Rh4BG419500 Rh4CG420700 Rh4CG433500 Rh4DG398800 Rh4DG414500
rosa_wichuraiana	Rw4G035070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	115, 159
AjiI	CACGTC	1 cut(s)	140
AjuI	GAANNNNNNNTTGG	2 cut(s)	171, 203
AluBI	AGCT	2 cut(s)	67, 221
AluI	AGCT	2 cut(s)	67, 221
AoxI	GGCC	1 cut(s)	148
ApeKI	GCWGC	1 cut(s)	64
AspS9I	GGNCC	1 cut(s)	149
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	2 cut(s)	115, 140
BisI	GCNGC	1 cut(s)	65
BlsI	GCNGC	1 cut(s)	66
BmcAI	AGTACT	1 cut(s)	115
BmgBI	CACGTC	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	138
BsaWI	WCCGGW	1 cut(s)	83
BseMII	CTCAG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	76
BshFI	GGCC	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	84
BslFI	GGGAC	1 cut(s)	150
BsmFI	GGGAC	1 cut(s)	150
BsmI	GAATGC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	150
Bsp143I	GATC	1 cut(s)	229
BspANI	GGCC	1 cut(s)	150
BspCNI	CTCAG	1 cut(s)	27
BssMI	GATC	1 cut(s)	229
Bst4CI	ACNGT	1 cut(s)	100
BstDEI	CTNAG	2 cut(s)	35, 117
BstKTI	GATC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	229
BstMWI	GCNNNNNNNGC	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	150
BtgZI	GCGATG	1 cut(s)	207
BtrI	CACGTC	1 cut(s)	140
BtsIMutI	CAGTG	2 cut(s)	32, 96
Cfr13I	GGNCC	1 cut(s)	149
Csp6I	GTAC	2 cut(s)	114, 158
CviJI	RGCY	3 cut(s)	67, 150, 221
CviKI_1	RGCY	3 cut(s)	67, 150, 221
CviQI	GTAC	2 cut(s)	114, 158
DdeI	CTNAG	2 cut(s)	35, 117
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
FaqI	GGGAC	1 cut(s)	150
Fnu4HI	GCNGC	1 cut(s)	65
Fsp4HI	GCNGC	1 cut(s)	65
GluI	GCNGC	1 cut(s)	65
HaeIII	GGCC	1 cut(s)	150
HapII	CCGG	1 cut(s)	84
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	1 cut(s)	84
HpyAV	CCTTC	2 cut(s)	58, 127
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4IV	ACGT	1 cut(s)	139
HpyCH4V	TGCA	1 cut(s)	130
HpyF10VI	GCNNNNNNNGC	1 cut(s)	189
HpyF3I	CTNAG	2 cut(s)	35, 117
HpySE526I	ACGT	1 cut(s)	139
Kzo9I	GATC	1 cut(s)	229
LmnI	GCTCC	1 cut(s)	72
LpnPI	CCDG	1 cut(s)	97
Lsp1109I	GCAGC	1 cut(s)	76
MaeII	ACGT	1 cut(s)	139
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MboII	GAAGA	1 cut(s)	205
MluCI	AATT	1 cut(s)	171
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	3 cut(s)	30, 91, 162
MspI	CCGG	1 cut(s)	84
Mva1269I	GAATGC	1 cut(s)	185
MwoI	GCNNNNNNNGC	1 cut(s)	189
NdeII	GATC	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	86
PcsI	WCGNNNNNNNCGW	1 cut(s)	166
PctI	GAATGC	1 cut(s)	185
PkrI	GCNGC	1 cut(s)	66
PleI	GAGTC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	14
PspPI	GGNCC	1 cut(s)	149
RsaI	GTAC	2 cut(s)	115, 159
RsaNI	GTAC	2 cut(s)	114, 158
SatI	GCNGC	1 cut(s)	65
Sau3AI	GATC	1 cut(s)	229
Sau96I	GGNCC	1 cut(s)	149
ScaI	AGTACT	1 cut(s)	115
SchI	GAGTC	1 cut(s)	14
SetI	ASST	8 cut(s)	50, 60, 69, 83, 108, 142, 223, 238
SmlI	CTYRAG	1 cut(s)	153
SmoI	CTYRAG	1 cut(s)	153
Sse9I	AATT	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	100
TaiI	ACGT	1 cut(s)	142
TaqI	TCGA	2 cut(s)	23, 223
TasI	AATT	1 cut(s)	171
TatI	WGTACW	1 cut(s)	113
TscAI	CASTG	2 cut(s)	39, 103
TseFI	GTSAC	1 cut(s)	86
TseI	GCWGC	1 cut(s)	64
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	1 cut(s)	210
TspGWI	ACGGA	1 cut(s)	59
TspRI	CASTG	2 cut(s)	39, 103
ZrmI	AGTACT	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.