Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019062.1

Orthogroup ID

OG0003500

Physical Location & Seq

Genomic Coordinates Reverse (-)

21130 .. 21595

Gene Structure 466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019062.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

atgaaagaggtggacttgatgaaagaaggttcgactgtaaccctgcggaatgccaaaattgacatgttcaaaggatcaatgaggcttgctgtggacaaatggggccgagttgaagttgcggagcctgccagttttactgtgatggaagataacaacctttcactcattgaatatgaacttgtcaatgttgttgaagagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

No domains found.

Protein Analysis

66

Amino Acids

7.51

Weight (kDa)

4.63

Isoelectric Point (pI)

19.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10590 AT1G10590 AT1G10590 AT1G23750 AT1G23750
fragaria_vesca	FvH4_4g33300 FvH4_4g34480
malus_domestica	MD13G1092100.v1.1 MD16G1092700.v1.1
prunus_persica	Prupe.1G253600_v2.0.a1
pyrus_communis	pycom16g07910
rosa_chinensis	RchiOBHm_Chr4g0442331 RchiOBHm_Chr4g0443871
rosa_laevigata	RLG00000005882 RLG00000006017
rosa_multiflora	Rmu_sc0000124.1_g000051 Rmu_sc0010179.1_g000002 Rmu_sc0019062.1_g000005 Rmu_sc0042307.1_g000001 Rmu_sc0042318.1_g000001
rosa_roxburghii	Rroxscaffold_5G00383190 Rroxscaffold_5G00384430
rosa_rugosa	Rorug04G0340400 Rorug04G0340400 Rorug04G0340500 Rorug04G0347900.1
rosa_samantha	Rh4AG392100 Rh4AG408500 Rh4BG405600 Rh4BG419500 Rh4CG420700 Rh4CG433500 Rh4DG398800 Rh4DG414500
rosa_wichuraiana	Rw4G035070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	46, 119
AclWI	GGATC	1 cut(s)	82
AflIII	ACRYGT	1 cut(s)	63
AgsI	TTSAA	4 cut(s)	70, 113, 170, 194
AlwI	GGATC	1 cut(s)	82
AoxI	GGCC	1 cut(s)	103
AspS9I	GGNCC	1 cut(s)	103
BccI	CCATC	1 cut(s)	136
BmgT120I	GGNCC	1 cut(s)	103
BmiI	GGNNCC	2 cut(s)	104, 123
Bse1I	ACTGG	1 cut(s)	129
BseNI	ACTGG	1 cut(s)	129
BshFI	GGCC	1 cut(s)	105
BsmI	GAATGC	1 cut(s)	55
BsnI	GGCC	1 cut(s)	105
Bsp143I	GATC	1 cut(s)	74
BspACI	CCGC	2 cut(s)	46, 119
BspANI	GGCC	1 cut(s)	105
BspLI	GGNNCC	2 cut(s)	104, 123
BspPI	GGATC	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	129
BssMI	GATC	1 cut(s)	74
Bst4CI	ACNGT	2 cut(s)	37, 139
Bst6I	CTCTTC	1 cut(s)	189
BstC8I	GCNNGC	2 cut(s)	87, 126
BstKTI	GATC	1 cut(s)	77
BstMBI	GATC	1 cut(s)	74
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstNSI	RCATGY	1 cut(s)	67
BsuRI	GGCC	1 cut(s)	105
Cac8I	GCNNGC	2 cut(s)	87, 126
Cfr13I	GGNCC	1 cut(s)	103
CviAII	CATG	1 cut(s)	64
CviJI	RGCY	3 cut(s)	85, 105, 124
CviKI_1	RGCY	3 cut(s)	85, 105, 124
DpnI	GATC	1 cut(s)	76
DpnII	GATC	1 cut(s)	74
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
FaeI	CATG	1 cut(s)	67
FaiI	YATR	2 cut(s)	65, 174
FatI	CATG	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	105
Hin1II	CATG	1 cut(s)	67
Hpy166II	GTNNAC	2 cut(s)	13, 94
Hpy8I	GTNNAC	2 cut(s)	13, 94
HpyAV	CCTTC	1 cut(s)	20
HpyCH4III	ACNGT	2 cut(s)	37, 139
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
Hsp92II	CATG	1 cut(s)	67
Kzo9I	GATC	1 cut(s)	74
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	3 cut(s)	56, 138, 142
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	1 cut(s)	76
MboI	GATC	1 cut(s)	74
MboII	GAAGA	1 cut(s)	158
MluCI	AATT	1 cut(s)	57
MnlI	CCTC	1 cut(s)	75
Mva1269I	GAATGC	1 cut(s)	55
MwoI	GCNNNNNNNGC	1 cut(s)	125
NdeII	GATC	1 cut(s)	74
NlaIII	CATG	1 cut(s)	67
NlaIV	GGNNCC	2 cut(s)	104, 123
NmeAIII	GCCGAG	1 cut(s)	131
NspI	RCATGY	1 cut(s)	67
PciI	ACATGT	1 cut(s)	63
PctI	GAATGC	1 cut(s)	55
PscI	ACATGT	1 cut(s)	63
PspN4I	GGNNCC	2 cut(s)	104, 123
PspPI	GGNCC	1 cut(s)	103
Sau3AI	GATC	1 cut(s)	74
Sau96I	GGNCC	1 cut(s)	103
SetI	ASST	3 cut(s)	12, 31, 159
SgeI	CNNG	8 cut(s)	28, 55, 76, 98, 119, 137, 141, 191
Sse9I	AATT	1 cut(s)	57
SsiI	CCGC	2 cut(s)	46, 119
TaaI	ACNGT	2 cut(s)	37, 139
TaqI	TCGA	1 cut(s)	32
TasI	AATT	1 cut(s)	57
TspDTI	ATGAA	3 cut(s)	17, 35, 189
XceI	RCATGY	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.