Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000124.1

Orthogroup ID

OG0003500

Physical Location & Seq

Genomic Coordinates Forward (+)

202887 .. 205879

Gene Structure 2993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000124.1_g000051.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

atgtcggaaacgacacagaggatggcgaagcctctgcacaatttcagtttgccgtgggatttgaagtgggggaaccagaaggtggattccgatggcgagcatcggctgggtttgatcggccatcagcgaacttgcatcaccgtggccgtgactgagaaatgtgatgtttatggttttcgtgtggcggccctagaaataatcatgggaagacatcctggagaacttattttcttgactgcaacatcttccttgatgtcgacaaagtcacccttggttttacaaattatgctgaaagatgtgttggatccacggctatctcctcccagcattcaaccggtcttttctcaaatggcaggctcgaaacaagcaccgagcaaaccaaccttcacaaaggttatgcagctccgcccaatgacctctggtgtcgctctcactgtaaaggttgttaatactaagatagtatgcccgaagggacgtgctggtgggcctcgaggccaaatgcgaattgctgattgcttggttggcgatgaaacggcaatgataatcttcacggctagaaacgatcaagtggacttgatgaaagagggttcaactgtaaccctgcgaaatgccaaaattgacatgtttaaaggatcaatgaggcttgctgtggacaaaagtggccgtattgaagttgctgagcctgccaattttaccgtgatggaaaataacaacctatcactcattgaatttgaccgtgtcgatgttgttatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

No domains found.

Protein Analysis

251

Amino Acids

27.64

Weight (kDa)

9.23

Isoelectric Point (pI)

27.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10590 AT1G10590 AT1G10590 AT1G23750 AT1G23750
fragaria_vesca	FvH4_4g33300 FvH4_4g34480
malus_domestica	MD13G1092100.v1.1 MD16G1092700.v1.1
prunus_persica	Prupe.1G253600_v2.0.a1
pyrus_communis	pycom16g07910
rosa_chinensis	RchiOBHm_Chr4g0442331 RchiOBHm_Chr4g0443871
rosa_laevigata	RLG00000005882 RLG00000006017
rosa_multiflora	Rmu_sc0000124.1_g000051 Rmu_sc0010179.1_g000002 Rmu_sc0019062.1_g000005 Rmu_sc0042307.1_g000001 Rmu_sc0042318.1_g000001
rosa_roxburghii	Rroxscaffold_5G00383190 Rroxscaffold_5G00384430
rosa_rugosa	Rorug04G0340400 Rorug04G0340400 Rorug04G0340500 Rorug04G0347900.1
rosa_samantha	Rh4AG392100 Rh4AG408500 Rh4BG405600 Rh4BG419500 Rh4CG420700 Rh4CG433500 Rh4DG398800 Rh4DG414500
rosa_wichuraiana	Rw4G035070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	489
AccB7I	CCANNNNNTGG	1 cut(s)	82
AccI	GTMKAC	1 cut(s)	257
AciI	CCGC	2 cut(s)	185, 406
AclWI	GGATC	3 cut(s)	299, 312, 640
AcoI	YGGCCR	3 cut(s)	118, 144, 661
AcsI	RAATTY	1 cut(s)	728
AfiI	CCNNNNNNNGG	1 cut(s)	82
AflIII	ACRYGT	1 cut(s)	621
AgeI	ACCGGT	1 cut(s)	334
AgsI	TTSAA	5 cut(s)	64, 332, 591, 671, 728
AjiI	CACGTC	1 cut(s)	476
AjnI	CCWGG	1 cut(s)	214
AjuI	GAANNNNNNNTTGG	2 cut(s)	284, 316
AluBI	AGCT	1 cut(s)	403
AluI	AGCT	1 cut(s)	403
AlwI	GGATC	3 cut(s)	299, 312, 640
Ama87I	CYCGRG	1 cut(s)	489
AoxI	GGCC	6 cut(s)	118, 144, 186, 485, 493, 661
ApeKI	GCWGC	1 cut(s)	400
ApoI	RAATTY	1 cut(s)	728
AsiGI	ACCGGT	1 cut(s)	334
AspS9I	GGNCC	2 cut(s)	187, 485
AsuHPI	GGTGA	2 cut(s)	130, 258
AvaI	CYCGRG	1 cut(s)	489
BamHI	GGATCC	1 cut(s)	304
BbsI	GAAGAC	1 cut(s)	214
BbvI	GCAGC	1 cut(s)	412
BccI	CCATC	4 cut(s)	16, 86, 129, 694
BceAI	ACGGC	6 cut(s)	37, 131, 326, 549, 567, 648
BcgI	CGANNNNNNTGC	2 cut(s)	16, 50
BciT130I	CCWGG	1 cut(s)	216
BfaI	CTAG	2 cut(s)	191, 555
BisI	GCNGC	2 cut(s)	186, 401
BlpI	GCTNAGC	1 cut(s)	678
BlsI	GCNGC	2 cut(s)	187, 402
Bme1390I	CCNGG	1 cut(s)	216
BmeT110I	CYCGRG	1 cut(s)	489
BmgBI	CACGTC	1 cut(s)	476
BmgT120I	GGNCC	2 cut(s)	187, 485
BmiI	GGNNCC	2 cut(s)	74, 306
BmrFI	CCNGG	1 cut(s)	216
BmsI	GCATC	2 cut(s)	109, 144
BpiI	GAAGAC	1 cut(s)	214
BpmI	CTGGAG	1 cut(s)	237
Bpu1102I	GCTNAGC	1 cut(s)	678
BsaJI	CCNNGG	4 cut(s)	53, 141, 270, 308
BsaWI	WCCGGW	1 cut(s)	334
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse118I	RCCGGY	1 cut(s)	334
Bse3DI	GCAATG	1 cut(s)	543
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	4 cut(s)	53, 141, 270, 308
BseGI	GGATG	2 cut(s)	27, 211
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMI	GCAATG	1 cut(s)	543
BseMII	CTCAG	2 cut(s)	144, 669
BseRI	GAGGAG	1 cut(s)	309
BseXI	GCAGC	1 cut(s)	412
BseYI	CCCAGC	2 cut(s)	106, 323
BsgI	GTGCAG	1 cut(s)	20
BshFI	GGCC	6 cut(s)	120, 146, 188, 487, 495, 663
BshTI	ACCGGT	1 cut(s)	334
BsiHKCI	CYCGRG	1 cut(s)	489
BsiSI	CCGG	1 cut(s)	335
BslFI	GGGAC	1 cut(s)	486
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmFI	GGGAC	1 cut(s)	486
BsmI	GAATGC	1 cut(s)	327
BsnI	GGCC	6 cut(s)	120, 146, 188, 487, 495, 663
BsoBI	CYCGRG	1 cut(s)	489
Bsp143I	GATC	4 cut(s)	114, 304, 562, 632
Bsp1720I	GCTNAGC	1 cut(s)	678
BspACI	CCGC	2 cut(s)	185, 406
BspANI	GGCC	6 cut(s)	120, 146, 188, 487, 495, 663
BspCNI	CTCAG	2 cut(s)	145, 670
BspLI	GGNNCC	2 cut(s)	74, 306
BspPI	GGATC	3 cut(s)	299, 312, 640
BsrDI	GCAATG	1 cut(s)	543
BsrFI	RCCGGY	1 cut(s)	334
BssAI	RCCGGY	1 cut(s)	334
BssECI	CCNNGG	4 cut(s)	53, 141, 270, 308
BssMI	GATC	4 cut(s)	114, 304, 562, 632
BssT1I	CCWWGG	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	5 cut(s)	142, 436, 595, 697, 737
BstC8I	GCNNGC	4 cut(s)	98, 355, 645, 684
BstDEI	CTNAG	3 cut(s)	153, 453, 678
BstDSI	CCRYGG	3 cut(s)	53, 141, 308
BstF5I	GGATG	2 cut(s)	27, 211
BstKTI	GATC	4 cut(s)	117, 307, 565, 635
BstMBI	GATC	4 cut(s)	114, 304, 562, 632
BstMWI	GCNNNNNNNGC	2 cut(s)	522, 683
BstNI	CCWGG	1 cut(s)	216
BstNSI	RCATGY	1 cut(s)	625
BstSCI	CCNGG	1 cut(s)	214
BstV1I	GCAGC	1 cut(s)	412
BstV2I	GAAGAC	1 cut(s)	214
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
BsuRI	GGCC	6 cut(s)	120, 146, 188, 487, 495, 663
BtgI	CCRYGG	3 cut(s)	53, 141, 308
BtgZI	GCGATG	1 cut(s)	540
BtrI	CACGTC	1 cut(s)	476
BtsCI	GGATG	2 cut(s)	27, 211
BtsIMutI	CAGTG	1 cut(s)	432
Cac8I	GCNNGC	4 cut(s)	98, 355, 645, 684
Cfr10I	RCCGGY	1 cut(s)	334
Cfr13I	GGNCC	2 cut(s)	187, 485
CspAI	ACCGGT	1 cut(s)	334
CviAII	CATG	2 cut(s)	202, 622
DdeI	CTNAG	3 cut(s)	153, 453, 678
DpnI	GATC	4 cut(s)	116, 306, 564, 634
DpnII	GATC	4 cut(s)	114, 304, 562, 632
DraI	TTTAAA	1 cut(s)	628
EaeI	YGGCCR	3 cut(s)	118, 144, 661
EciI	GGCGGA	1 cut(s)	395
Eco130I	CCWWGG	1 cut(s)	270
Eco88I	CYCGRG	1 cut(s)	489
EcoRII	CCWGG	1 cut(s)	214
EcoT14I	CCWWGG	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	2 cut(s)	205, 625
FaiI	YATR	8 cut(s)	171, 203, 287, 398, 463, 623, 752, 754
FalI	AAGNNNNNCTT	2 cut(s)	254, 286
FaqI	GGGAC	1 cut(s)	486
FatI	CATG	2 cut(s)	201, 621
FblI	GTMKAC	1 cut(s)	257
Fnu4HI	GCNGC	2 cut(s)	186, 401
FokI	GGATG	2 cut(s)	34, 198
Fsp4HI	GCNGC	2 cut(s)	186, 401
FspBI	CTAG	2 cut(s)	191, 555
GluI	GCNGC	2 cut(s)	186, 401
GsaI	CCCAGC	2 cut(s)	110, 327
GsuI	CTGGAG	1 cut(s)	237
HaeIII	GGCC	6 cut(s)	120, 146, 188, 487, 495, 663
HapII	CCGG	1 cut(s)	335
Hin1II	CATG	2 cut(s)	205, 625
HincII	GTYRAC	1 cut(s)	258
HindII	GTYRAC	1 cut(s)	258
HinfI	GANTC	1 cut(s)	86
HpaII	CCGG	1 cut(s)	335
HphI	GGTGA	2 cut(s)	130, 258
Hpy166II	GTNNAC	3 cut(s)	258, 571, 652
Hpy188I	TCNGA	2 cut(s)	7, 91
Hpy188III	TCNNGA	1 cut(s)	232
Hpy8I	GTNNAC	3 cut(s)	258, 571, 652
HpyAV	CCTTC	3 cut(s)	73, 394, 463
HpyCH4III	ACNGT	5 cut(s)	142, 436, 595, 697, 737
HpyCH4IV	ACGT	1 cut(s)	475
HpyCH4V	TGCA	4 cut(s)	37, 135, 239, 400
HpyF10VI	GCNNNNNNNGC	2 cut(s)	522, 683
HpyF3I	CTNAG	3 cut(s)	153, 453, 678
HpySE526I	ACGT	1 cut(s)	475
Hsp92II	CATG	2 cut(s)	205, 625
Kzo9I	GATC	4 cut(s)	114, 304, 562, 632
LmnI	GCTCC	1 cut(s)	408
Lsp1109I	GCAGC	1 cut(s)	412
LweI	GCATC	2 cut(s)	109, 144
MaeI	CTAG	2 cut(s)	191, 555
MaeII	ACGT	1 cut(s)	475
MaeIII	GTNAC	3 cut(s)	148, 264, 595
MalI	GATC	4 cut(s)	116, 306, 564, 634
MboI	GATC	4 cut(s)	114, 304, 562, 632
MboII	GAAGA	3 cut(s)	219, 237, 538
MflI	RGATCY	1 cut(s)	304
MluCI	AATT	6 cut(s)	40, 282, 504, 615, 688, 728
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	8 cut(s)	12, 42, 330, 427, 485, 498, 577, 633
MseI	TTAA	2 cut(s)	447, 627
MslI	CAYNNNNRTG	1 cut(s)	140
MspI	CCGG	1 cut(s)	335
MspR9I	CCNGG	1 cut(s)	216
Mva1269I	GAATGC	1 cut(s)	327
MvaI	CCWGG	1 cut(s)	216
MwoI	GCNNNNNNNGC	2 cut(s)	522, 683
NdeII	GATC	4 cut(s)	114, 304, 562, 632
NlaIII	CATG	2 cut(s)	205, 625
NlaIV	GGNNCC	2 cut(s)	74, 306
NmuCI	GTSAC	2 cut(s)	148, 264
NspI	RCATGY	1 cut(s)	625
PaeR7I	CTCGAG	1 cut(s)	489
PciI	ACATGT	1 cut(s)	621
PctI	GAATGC	1 cut(s)	327
PfeI	GAWTC	1 cut(s)	86
PflFI	GACNNNGTC	2 cut(s)	262, 737
PflMI	CCANNNNNTGG	1 cut(s)	82
PfoI	TCCNGGA	1 cut(s)	214
PinAI	ACCGGT	1 cut(s)	334
PkrI	GCNGC	2 cut(s)	187, 402
PscI	ACATGT	1 cut(s)	621
Psp6I	CCWGG	1 cut(s)	214
PspFI	CCCAGC	2 cut(s)	106, 323
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	2 cut(s)	74, 306
PspPI	GGNCC	2 cut(s)	187, 485
PspXI	VCTCGAGB	1 cut(s)	489
PsuI	RGATCY	1 cut(s)	304
PsyI	GACNNNGTC	2 cut(s)	262, 737
RseI	CAYNNNNRTG	1 cut(s)	140
SalI	GTCGAC	1 cut(s)	256
SaqAI	TTAA	2 cut(s)	447, 627
SatI	GCNGC	2 cut(s)	186, 401
Sau3AI	GATC	4 cut(s)	114, 304, 562, 632
Sau96I	GGNCC	2 cut(s)	187, 485
ScrFI	CCNGG	1 cut(s)	216
SetI	ASST	8 cut(s)	84, 386, 396, 405, 419, 444, 478, 717
SfaNI	GCATC	2 cut(s)	109, 144
Sfr274I	CTCGAG	1 cut(s)	489
SlaI	CTCGAG	1 cut(s)	489
SmiMI	CAYNNNNRTG	1 cut(s)	140
SmlI	CTYRAG	1 cut(s)	489
SmoI	CTYRAG	1 cut(s)	489
Sse9I	AATT	6 cut(s)	40, 282, 504, 615, 688, 728
SsiI	CCGC	2 cut(s)	185, 406
SspMI	CTAG	2 cut(s)	191, 555
StyD4I	CCNGG	1 cut(s)	214
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	5 cut(s)	142, 436, 595, 697, 737
TaiI	ACGT	1 cut(s)	478
TaqI	TCGA	4 cut(s)	257, 359, 490, 741
TasI	AATT	6 cut(s)	40, 282, 504, 615, 688, 728
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	2 cut(s)	447, 627
Tru9I	TTAA	2 cut(s)	447, 627
TscAI	CASTG	1 cut(s)	439
TseFI	GTSAC	2 cut(s)	148, 264
TseI	GCWGC	1 cut(s)	400
Tsp45I	GTSAC	2 cut(s)	148, 264
TspDTI	ATGAA	2 cut(s)	543, 593
TspRI	CASTG	1 cut(s)	439
Tth111I	GACNNNGTC	2 cut(s)	262, 737
Van91I	CCANNNNNTGG	1 cut(s)	82
XapI	RAATTY	1 cut(s)	728
XceI	RCATGY	1 cut(s)	625
XhoI	CTCGAG	1 cut(s)	489
XmiI	GTMKAC	1 cut(s)	257
XspI	CTAG	2 cut(s)	191, 555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.