Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042318.1

Orthogroup ID

OG0003500

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 591

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042318.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 223 bp

atggcagactcgaaacaagcactgaggaaaccaaccttcacaaaggtcgggcagctccgtccaagcacctccggtcacactctcactgtaaaggttgttagtactaagatggtattgcagaagggacgtgctgatggccctcaagtacgccaaatgcgaattgctgaatgcttggttggcgatgaaacgggaatgataatcttcacagctcgaaacgatcaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

No domains found.

Protein Analysis

74

Amino Acids

8.13

Weight (kDa)

10.28

Isoelectric Point (pI)

39.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10590 AT1G10590 AT1G10590 AT1G23750 AT1G23750
fragaria_vesca	FvH4_4g33300 FvH4_4g34480
malus_domestica	MD13G1092100.v1.1 MD16G1092700.v1.1
prunus_persica	Prupe.1G253600_v2.0.a1
pyrus_communis	pycom16g07910
rosa_chinensis	RchiOBHm_Chr4g0442331 RchiOBHm_Chr4g0443871
rosa_laevigata	RLG00000005882 RLG00000006017
rosa_multiflora	Rmu_sc0000124.1_g000051 Rmu_sc0010179.1_g000002 Rmu_sc0019062.1_g000005 Rmu_sc0042307.1_g000001 Rmu_sc0042318.1_g000001
rosa_roxburghii	Rroxscaffold_5G00383190 Rroxscaffold_5G00384430
rosa_rugosa	Rorug04G0340400 Rorug04G0340400 Rorug04G0340500 Rorug04G0347900.1
rosa_samantha	Rh4AG392100 Rh4AG408500 Rh4BG405600 Rh4BG419500 Rh4CG420700 Rh4CG433500 Rh4DG398800 Rh4DG414500
rosa_wichuraiana	Rw4G035070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	103, 147
AjiI	CACGTC	1 cut(s)	128
AjuI	GAANNNNNNNTTGG	2 cut(s)	159, 191
AluBI	AGCT	2 cut(s)	55, 209
AluI	AGCT	2 cut(s)	55, 209
AoxI	GGCC	1 cut(s)	136
ApeKI	GCWGC	1 cut(s)	52
AspS9I	GGNCC	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	64
BccI	CCATC	2 cut(s)	103, 128
BisI	GCNGC	1 cut(s)	53
BlsI	GCNGC	1 cut(s)	54
BmcAI	AGTACT	1 cut(s)	103
BmgBI	CACGTC	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	137
BpuEI	CTTGAG	1 cut(s)	126
BsaWI	WCCGGW	1 cut(s)	71
BseMII	CTCAG	1 cut(s)	14
BseXI	GCAGC	1 cut(s)	64
BshFI	GGCC	1 cut(s)	138
BsiSI	CCGG	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	138
BsmFI	GGGAC	1 cut(s)	138
BsmI	GAATGC	1 cut(s)	173
BsnI	GGCC	1 cut(s)	138
Bsp143I	GATC	1 cut(s)	217
BspANI	GGCC	1 cut(s)	138
BspCNI	CTCAG	1 cut(s)	15
BssMI	GATC	1 cut(s)	217
Bst4CI	ACNGT	1 cut(s)	88
BstDEI	CTNAG	2 cut(s)	23, 105
BstKTI	GATC	1 cut(s)	220
BstMBI	GATC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	64
BsuRI	GGCC	1 cut(s)	138
BtgZI	GCGATG	1 cut(s)	195
BtrI	CACGTC	1 cut(s)	128
BtsIMutI	CAGTG	2 cut(s)	20, 84
Cfr13I	GGNCC	1 cut(s)	137
Csp6I	GTAC	2 cut(s)	102, 146
CviJI	RGCY	3 cut(s)	55, 138, 209
CviKI_1	RGCY	3 cut(s)	55, 138, 209
CviQI	GTAC	2 cut(s)	102, 146
DdeI	CTNAG	2 cut(s)	23, 105
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
FaqI	GGGAC	1 cut(s)	138
Fnu4HI	GCNGC	1 cut(s)	53
Fsp4HI	GCNGC	1 cut(s)	53
GluI	GCNGC	1 cut(s)	53
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	1 cut(s)	72
HinfI	GANTC	1 cut(s)	8
HpaII	CCGG	1 cut(s)	72
HpyAV	CCTTC	2 cut(s)	46, 115
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	1 cut(s)	118
HpyF10VI	GCNNNNNNNGC	1 cut(s)	177
HpyF3I	CTNAG	2 cut(s)	23, 105
HpySE526I	ACGT	1 cut(s)	127
Kzo9I	GATC	1 cut(s)	217
LmnI	GCTCC	1 cut(s)	60
LpnPI	CCDG	1 cut(s)	85
Lsp1109I	GCAGC	1 cut(s)	64
MaeII	ACGT	1 cut(s)	127
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	1 cut(s)	193
MluCI	AATT	1 cut(s)	159
MlyI	GAGTC	1 cut(s)	2
MnlI	CCTC	3 cut(s)	18, 79, 150
MspI	CCGG	1 cut(s)	72
Mva1269I	GAATGC	1 cut(s)	173
MwoI	GCNNNNNNNGC	1 cut(s)	177
NdeII	GATC	1 cut(s)	217
NmuCI	GTSAC	1 cut(s)	74
PcsI	WCGNNNNNNNCGW	1 cut(s)	154
PctI	GAATGC	1 cut(s)	173
PkrI	GCNGC	1 cut(s)	54
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
PspPI	GGNCC	1 cut(s)	137
RsaI	GTAC	2 cut(s)	103, 147
RsaNI	GTAC	2 cut(s)	102, 146
SatI	GCNGC	1 cut(s)	53
Sau3AI	GATC	1 cut(s)	217
Sau96I	GGNCC	1 cut(s)	137
ScaI	AGTACT	1 cut(s)	103
SchI	GAGTC	1 cut(s)	2
SetI	ASST	7 cut(s)	38, 48, 57, 71, 96, 130, 211
SgeI	CNNG	9 cut(s)	22, 29, 61, 75, 84, 140, 155, 184, 201
SmlI	CTYRAG	1 cut(s)	141
SmoI	CTYRAG	1 cut(s)	141
Sse9I	AATT	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	88
TaiI	ACGT	1 cut(s)	130
TaqI	TCGA	2 cut(s)	11, 211
TasI	AATT	1 cut(s)	159
TatI	WGTACW	1 cut(s)	101
TscAI	CASTG	2 cut(s)	27, 91
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	1 cut(s)	52
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	1 cut(s)	198
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	2 cut(s)	27, 91
ZrmI	AGTACT	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.