Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012495

Physical Location & Seq

Genomic Coordinates Reverse (-)

37219774 .. 37222860

Gene Structure 3087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G436300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGAGTCCCCAAAGCCCTACGGGCGCTCAAACCCTCTGCTCTCACTCTCCACTTTCATACACCAGAACTGCCTCCAGCTTGGCGCCGAGCTCTCCAGCCGTCTCGAAGACACCAAGCGGCTCGCCGGAACCCTCGCCGGAAACTTGGCGCCCTCGGCGAGAAGGCGCATGTGCTCGGCTCCGGTTGCTCCGCCCTTCGCGTGGCTGTCTCAGAGCAATCACGCCTTGGCCGCGACCATCAGCTCGGACCACGTGGCAAAGAGCCTAGCCGGCACGGCGGTGTATACGGTTAGCAATTCGAACAATGAGTTCGTGCTTATCTCTGATCCCAATGAAGCCAAGTCCATTGGCCTCCTCTGCTTTCGCCACGAAGATGCCGAAGCCTTCCTAGCTCAAGTTCGGTCGAGGAGAGAGTTACGAAGTGCGGCTAAGGTTGTCCCGATTACTCTCGACCAGGTATACATGCTGAAGGTTGAAGGAATTGCGTTCCGGTTTTTGCCTGATCCAGTGCAAATAAGGAATGCACTCGAGCTCAAATCTGCTGACAGGAGTGCGTTTGATGGAGTTCCTGTTTTTCAGTCGGACCTTCTGGTTATGAAGAAGAAAAATAAGCGTTACTGCCCAATATATTTCACCAAGGAAGATATTGAAAAAGAATTGTCAAAGGTCTCTAGAGTGTCCAGAGGACCAGGGGTTTCTCAACATATTATGGTTGGTAGTTTGGAAGATGTTTTGAGAAAAATGGAGTTAAGTGAAAAGAATTCAGGCTGGGAAGATCTGATTTTCATTCCACCTGGAAAAAGCTACTCCCAACACATTCAGGATGTGGTTAAAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tic22

Protein Analysis

280

Amino Acids

30.89

Weight (kDa)

9.11

Isoelectric Point (pI)

57.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33350 AT4G33350
fragaria_vesca	FvH4_2g34490
malus_domestica	MD08G1102400.v1.1 MD15G1083800.v1.1
prunus_persica	Prupe.1G436300_v2.0.a1
pyrus_communis	pycom08g08320 pycom15g07850 pycom15g07890
rosa_chinensis	RchiOBHm_Chr6g0307851
rosa_laevigata	RLG00000010693
rosa_multiflora	Rmu_sc0003252.1_g000014
rosa_roxburghii	Rroxscaffold_7G00160820
rosa_rugosa	Rorug06G0361400
rosa_samantha	Rh6AG470200 Rh6BG481200 Rh6CG486500 Rh6DG472700
rosa_wichuraiana	Rw6G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	83, 148
AccI	GTMKAC	2 cut(s)	284, 459
AccII	CGCG	2 cut(s)	200, 233
AciI	CCGC	5 cut(s)	118, 191, 231, 278, 425
AclWI	GGATC	2 cut(s)	320, 497
AcoI	YGGCCR	1 cut(s)	228
AcsI	RAATTY	1 cut(s)	760
AcuI	CTGAAG	1 cut(s)	488
AcvI	CACGTG	1 cut(s)	253
AcyI	GRCGYC	2 cut(s)	84, 149
AfiI	CCNNNNNNNGG	1 cut(s)	201
AgsI	TTSAA	2 cut(s)	476, 650
AjnI	CCWGG	3 cut(s)	453, 688, 793
AleI	CACNNNNGTG	1 cut(s)	278
AluBI	AGCT	6 cut(s)	79, 91, 243, 392, 532, 804
AluI	AGCT	6 cut(s)	79, 91, 243, 392, 532, 804
Alw21I	GWGCWC	3 cut(s)	93, 176, 534
Alw26I	GTCTC	3 cut(s)	107, 213, 673
AlwI	GGATC	2 cut(s)	320, 497
Ama87I	CYCGRG	1 cut(s)	527
AoxI	GGCC	2 cut(s)	228, 349
ApoI	RAATTY	1 cut(s)	760
AspLEI	GCGC	4 cut(s)	27, 86, 151, 168
AspS9I	GGNCC	3 cut(s)	247, 583, 686
AsuHPI	GGTGA	1 cut(s)	625
AsuII	TTCGAA	1 cut(s)	299
AvaI	CYCGRG	1 cut(s)	527
AvaII	GGWCC	3 cut(s)	247, 583, 686
BanI	GGYRCC	2 cut(s)	83, 148
BanII	GRGCYC	2 cut(s)	93, 534
BbrPI	CACGTG	1 cut(s)	253
BbsI	GAAGAC	1 cut(s)	114
Bbv12I	GWGCWC	3 cut(s)	93, 176, 534
BccI	CCATC	2 cut(s)	245, 554
BceAI	ACGGC	2 cut(s)	84, 291
BciT130I	CCWGG	3 cut(s)	455, 690, 795
BcoDI	GTCTC	3 cut(s)	107, 213, 673
BfaI	CTAG	3 cut(s)	266, 389, 672
BfoI	RGCGCY	3 cut(s)	28, 87, 152
BglI	GCCNNNNNGGC	3 cut(s)	22, 270, 275
BglII	AGATCT	1 cut(s)	775
BisI	GCNGC	3 cut(s)	119, 231, 426
BlsI	GCNGC	3 cut(s)	120, 232, 427
Bme1390I	CCNGG	3 cut(s)	455, 690, 795
Bme18I	GGWCC	3 cut(s)	247, 583, 686
BmeT110I	CYCGRG	1 cut(s)	527
BmgT120I	GGNCC	3 cut(s)	247, 583, 686
BmiI	GGNNCC	4 cut(s)	85, 130, 150, 180
BmrFI	CCNGG	3 cut(s)	455, 690, 795
BmsI	GCATC	1 cut(s)	364
BpiI	GAAGAC	1 cut(s)	114
BpmI	CTGGAG	2 cut(s)	59, 79
Bpu10I	CCTNAGC	1 cut(s)	429
Bpu14I	TTCGAA	1 cut(s)	299
BpuEI	CTTGAG	1 cut(s)	378
BsaAI	YACGTR	1 cut(s)	253
BsaHI	GRCGYC	2 cut(s)	84, 149
BsaI	GGTCTC	1 cut(s)	673
BsaJI	CCNNGG	4 cut(s)	153, 225, 636, 689
BsaWI	WCCGGW	2 cut(s)	181, 489
BsaXI	ACNNNNNCTCC	2 cut(s)	555, 585
Bsc4I	CCNNNNNNNGG	1 cut(s)	201
Bse118I	RCCGGY	1 cut(s)	269
Bse1I	ACTGG	1 cut(s)	506
BseBI	CCWGG	3 cut(s)	455, 690, 795
BseDI	CCNNGG	4 cut(s)	153, 225, 636, 689
BseGI	GGATG	1 cut(s)	829
BseLI	CCNNNNNNNGG	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	224
BseNI	ACTGG	1 cut(s)	506
BseRI	GAGGAG	2 cut(s)	344, 421
BseYI	CCCAGC	1 cut(s)	768
Bsh1236I	CGCG	2 cut(s)	200, 233
Bsh1285I	CGRYCG	1 cut(s)	404
BshFI	GGCC	2 cut(s)	230, 351
BshNI	GGYRCC	2 cut(s)	83, 148
BsiEI	CGRYCG	1 cut(s)	404
BsiHKAI	GWGCWC	3 cut(s)	93, 176, 534
BsiHKCI	CYCGRG	1 cut(s)	527
BsiSI	CCGG	5 cut(s)	126, 138, 182, 270, 490
BslFI	GGGAC	1 cut(s)	422
BslI	CCNNNNNNNGG	1 cut(s)	201
BsmAI	GTCTC	3 cut(s)	107, 213, 673
BsmBI	CGTCTC	1 cut(s)	107
BsmFI	GGGAC	1 cut(s)	422
BsmI	GAATGC	1 cut(s)	526
BsnI	GGCC	2 cut(s)	230, 351
Bso31I	GGTCTC	1 cut(s)	673
BsoBI	CYCGRG	1 cut(s)	527
Bsp119I	TTCGAA	1 cut(s)	299
Bsp1286I	GDGCHC	3 cut(s)	93, 176, 534
Bsp143I	GATC	3 cut(s)	325, 502, 775
BspACI	CCGC	5 cut(s)	118, 191, 231, 278, 425
BspANI	GGCC	2 cut(s)	230, 351
BspCNI	CTCAG	1 cut(s)	223
BspFNI	CGCG	2 cut(s)	200, 233
BspLI	GGNNCC	4 cut(s)	85, 130, 150, 180
BspPI	GGATC	2 cut(s)	320, 497
BspT104I	TTCGAA	1 cut(s)	299
BspT107I	GGYRCC	2 cut(s)	83, 148
BspTNI	GGTCTC	1 cut(s)	673
BsrFI	RCCGGY	1 cut(s)	269
BsrI	ACTGG	1 cut(s)	506
BssAI	RCCGGY	1 cut(s)	269
BssECI	CCNNGG	4 cut(s)	153, 225, 636, 689
BssMI	GATC	3 cut(s)	325, 502, 775
BssNAI	GTATAC	2 cut(s)	285, 460
BssNI	GRCGYC	2 cut(s)	84, 149
BssT1I	CCWWGG	2 cut(s)	225, 636
Bst1107I	GTATAC	2 cut(s)	285, 460
Bst2UI	CCWGG	3 cut(s)	455, 690, 795
Bst4CI	ACNGT	1 cut(s)	289
BstACI	GRCGYC	2 cut(s)	84, 149
BstBAI	YACGTR	1 cut(s)	253
BstBI	TTCGAA	1 cut(s)	299
BstC8I	GCNNGC	2 cut(s)	123, 271
BstDEI	CTNAG	2 cut(s)	210, 429
BstF5I	GGATG	1 cut(s)	829
BstFNI	CGCG	2 cut(s)	200, 233
BstH2I	RGCGCY	3 cut(s)	28, 87, 152
BstHHI	GCGC	4 cut(s)	27, 86, 151, 168
BstKTI	GATC	3 cut(s)	328, 505, 778
BstMAI	GTCTC	3 cut(s)	107, 213, 673
BstMBI	GATC	3 cut(s)	325, 502, 775
BstMCI	CGRYCG	1 cut(s)	404
BstMWI	GCNNNNNNNGC	8 cut(s)	22, 155, 185, 230, 270, 275, 357, 389
BstNI	CCWGG	3 cut(s)	455, 690, 795
BstNSI	RCATGY	2 cut(s)	172, 466
BstSCI	CCNGG	3 cut(s)	453, 688, 793
BstUI	CGCG	2 cut(s)	200, 233
BstV2I	GAAGAC	1 cut(s)	114
BstX2I	RGATCY	1 cut(s)	775
BstYI	RGATCY	1 cut(s)	775
BstZ17I	GTATAC	2 cut(s)	285, 460
BsuRI	GGCC	2 cut(s)	230, 351
BtsCI	GGATG	1 cut(s)	829
BtsIMutI	CAGTG	1 cut(s)	513
Cac8I	GCNNGC	2 cut(s)	123, 271
CfoI	GCGC	4 cut(s)	27, 86, 151, 168
Cfr10I	RCCGGY	1 cut(s)	269
Cfr13I	GGNCC	3 cut(s)	247, 583, 686
CsiI	ACCWGGT	1 cut(s)	453
CviAII	CATG	2 cut(s)	169, 463
DdeI	CTNAG	2 cut(s)	210, 429
DinI	GGCGCC	2 cut(s)	85, 150
DpnI	GATC	3 cut(s)	327, 504, 777
DpnII	GATC	3 cut(s)	325, 502, 775
EaeI	YGGCCR	1 cut(s)	228
EciI	GGCGGA	1 cut(s)	180
Ecl136II	GAGCTC	2 cut(s)	91, 532
Eco130I	CCWWGG	2 cut(s)	225, 636
Eco24I	GRGCYC	2 cut(s)	93, 534
Eco31I	GGTCTC	1 cut(s)	673
Eco47I	GGWCC	3 cut(s)	247, 583, 686
Eco53kI	GAGCTC	2 cut(s)	91, 532
Eco57I	CTGAAG	1 cut(s)	488
Eco72I	CACGTG	1 cut(s)	253
Eco88I	CYCGRG	1 cut(s)	527
EcoICRI	GAGCTC	2 cut(s)	91, 532
EcoRI	GAATTC	1 cut(s)	760
EcoRII	CCWGG	3 cut(s)	453, 688, 793
EcoT14I	CCWWGG	2 cut(s)	225, 636
EcoT38I	GRGCYC	2 cut(s)	93, 534
EgeI	GGCGCC	2 cut(s)	85, 150
EheI	GGCGCC	2 cut(s)	85, 150
ErhI	CCWWGG	2 cut(s)	225, 636
Esp3I	CGTCTC	1 cut(s)	107
FaeI	CATG	2 cut(s)	172, 466
FaiI	YATR	9 cut(s)	59, 170, 285, 460, 464, 596, 628, 705, 710
FaqI	GGGAC	1 cut(s)	422
FatI	CATG	2 cut(s)	168, 462
FblI	GTMKAC	2 cut(s)	284, 459
Fnu4HI	GCNGC	3 cut(s)	119, 231, 426
FokI	GGATG	1 cut(s)	836
FriOI	GRGCYC	2 cut(s)	93, 534
Fsp4HI	GCNGC	3 cut(s)	119, 231, 426
FspBI	CTAG	3 cut(s)	266, 389, 672
GlaI	GCGC	4 cut(s)	26, 85, 150, 167
GluI	GCNGC	3 cut(s)	119, 231, 426
GsaI	CCCAGC	1 cut(s)	772
GsuI	CTGGAG	2 cut(s)	59, 79
HaeII	RGCGCY	3 cut(s)	28, 87, 152
HaeIII	GGCC	2 cut(s)	230, 351
HapII	CCGG	5 cut(s)	126, 138, 182, 270, 490
HhaI	GCGC	4 cut(s)	27, 86, 151, 168
Hin1I	GRCGYC	2 cut(s)	84, 149
Hin1II	CATG	2 cut(s)	172, 466
Hin6I	GCGC	4 cut(s)	25, 84, 149, 166
HinP1I	GCGC	4 cut(s)	25, 84, 149, 166
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	5 cut(s)	126, 138, 182, 270, 490
HphI	GGTGA	1 cut(s)	625
Hpy166II	GTNNAC	2 cut(s)	285, 460
Hpy188I	TCNGA	5 cut(s)	213, 247, 325, 583, 780
Hpy188III	TCNNGA	6 cut(s)	104, 439, 449, 672, 681, 821
Hpy8I	GTNNAC	2 cut(s)	285, 460
HpyAV	CCTTC	6 cut(s)	156, 205, 394, 463, 470, 596
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	2 cut(s)	511, 524
HpyF10VI	GCNNNNNNNGC	8 cut(s)	22, 155, 185, 230, 270, 275, 357, 389
HpyF3I	CTNAG	2 cut(s)	210, 429
HpySE526I	ACGT	1 cut(s)	252
Hsp92I	GRCGYC	2 cut(s)	84, 149
Hsp92II	CATG	2 cut(s)	172, 466
HspAI	GCGC	4 cut(s)	25, 84, 149, 166
KasI	GGCGCC	2 cut(s)	83, 148
KroI	GCCGGC	1 cut(s)	269
KroNI	GCCGGC	1 cut(s)	271
Kzo9I	GATC	3 cut(s)	325, 502, 775
LmnI	GCTCC	2 cut(s)	184, 193
LweI	GCATC	1 cut(s)	364
MabI	ACCWGGT	1 cut(s)	453
MaeI	CTAG	3 cut(s)	266, 389, 672
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	2 cut(s)	414, 614
MalI	GATC	3 cut(s)	327, 504, 777
MboI	GATC	3 cut(s)	325, 502, 775
MboII	GAAGA	7 cut(s)	119, 383, 610, 613, 653, 737, 785
MflI	RGATCY	1 cut(s)	775
MhlI	GDGCHC	3 cut(s)	93, 176, 534
MluCI	AATT	4 cut(s)	295, 480, 656, 760
Mly113I	GGCGCC	2 cut(s)	84, 149
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	561
MnlI	CCTC	8 cut(s)	45, 83, 143, 163, 362, 365, 399, 677
MroNI	GCCGGC	1 cut(s)	269
MseI	TTAA	2 cut(s)	749, 831
MslI	CAYNNNNRTG	2 cut(s)	278, 372
MspI	CCGG	5 cut(s)	126, 138, 182, 270, 490
MspR9I	CCNGG	3 cut(s)	455, 690, 795
Mva1269I	GAATGC	1 cut(s)	526
MvaI	CCWGG	3 cut(s)	455, 690, 795
MvnI	CGCG	2 cut(s)	200, 233
MwoI	GCNNNNNNNGC	8 cut(s)	22, 155, 185, 230, 270, 275, 357, 389
NaeI	GCCGGC	1 cut(s)	271
NarI	GGCGCC	2 cut(s)	84, 149
NdeII	GATC	3 cut(s)	325, 502, 775
NgoMIV	GCCGGC	1 cut(s)	269
NlaIII	CATG	2 cut(s)	172, 466
NlaIV	GGNNCC	4 cut(s)	85, 130, 150, 180
NmeAIII	GCCGAG	3 cut(s)	112, 134, 155
NspI	RCATGY	2 cut(s)	172, 466
NspV	TTCGAA	1 cut(s)	299
OliI	CACNNNNGTG	1 cut(s)	278
PaeR7I	CTCGAG	1 cut(s)	527
PcsI	WCGNNNNNNNCGW	1 cut(s)	375
PctI	GAATGC	1 cut(s)	526
PdiI	GCCGGC	1 cut(s)	271
PkrI	GCNGC	3 cut(s)	120, 232, 427
PleI	GAGTC	1 cut(s)	13
PluTI	GGCGCC	2 cut(s)	87, 152
PmaCI	CACGTG	1 cut(s)	253
PmlI	CACGTG	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	13
Ppu21I	YACGTR	1 cut(s)	253
Psp124BI	GAGCTC	2 cut(s)	93, 534
Psp6I	CCWGG	3 cut(s)	453, 688, 793
PspCI	CACGTG	1 cut(s)	253
PspFI	CCCAGC	1 cut(s)	768
PspGI	CCWGG	3 cut(s)	453, 688, 793
PspN4I	GGNNCC	4 cut(s)	85, 130, 150, 180
PspPI	GGNCC	3 cut(s)	247, 583, 686
PspXI	VCTCGAGB	1 cut(s)	527
PsuI	RGATCY	1 cut(s)	775
RseI	CAYNNNNRTG	2 cut(s)	278, 372
SacI	GAGCTC	2 cut(s)	93, 534
SaqAI	TTAA	2 cut(s)	749, 831
SatI	GCNGC	3 cut(s)	119, 231, 426
Sau3AI	GATC	3 cut(s)	325, 502, 775
Sau96I	GGNCC	3 cut(s)	247, 583, 686
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	3 cut(s)	455, 690, 795
SduI	GDGCHC	3 cut(s)	93, 176, 534
SexAI	ACCWGGT	1 cut(s)	453
SfaNI	GCATC	1 cut(s)	364
SfoI	GGCGCC	2 cut(s)	85, 150
Sfr274I	CTCGAG	1 cut(s)	527
SfuI	TTCGAA	1 cut(s)	299
SinI	GGWCC	3 cut(s)	247, 583, 686
SlaI	CTCGAG	1 cut(s)	527
SmiMI	CAYNNNNRTG	2 cut(s)	278, 372
SmlI	CTYRAG	2 cut(s)	393, 527
SmoI	CTYRAG	2 cut(s)	393, 527
Sse9I	AATT	4 cut(s)	295, 480, 656, 760
SsiI	CCGC	5 cut(s)	118, 191, 231, 278, 425
SspDI	GGCGCC	2 cut(s)	83, 148
SspMI	CTAG	3 cut(s)	266, 389, 672
SstI	GAGCTC	2 cut(s)	93, 534
StyD4I	CCNGG	3 cut(s)	453, 688, 793
StyI	CCWWGG	2 cut(s)	225, 636
TaaI	ACNGT	1 cut(s)	289
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	5 cut(s)	105, 299, 404, 450, 528
TaqII	GACCGA	1 cut(s)	390
TasI	AATT	4 cut(s)	295, 480, 656, 760
TauI	GCSGC	3 cut(s)	121, 233, 428
Tru1I	TTAA	2 cut(s)	749, 831
Tru9I	TTAA	2 cut(s)	749, 831
TscAI	CASTG	1 cut(s)	513
TspDTI	ATGAA	4 cut(s)	46, 348, 611, 775
TspRI	CASTG	1 cut(s)	513
VpaK11BI	GGWCC	3 cut(s)	247, 583, 686
XapI	RAATTY	1 cut(s)	760
XbaI	TCTAGA	1 cut(s)	671
XceI	RCATGY	2 cut(s)	172, 466
XhoI	CTCGAG	1 cut(s)	527
XmiI	GTMKAC	2 cut(s)	284, 459
XspI	CTAG	3 cut(s)	266, 389, 672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.