Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003252.1

Orthogroup ID

OG0012495

Physical Location & Seq

Genomic Coordinates Forward (+)

50320 .. 53254

Gene Structure 2935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003252.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

atggagtccccaaagcccttgggccctctgctctctctctccaccttcatacaccaccactgcctccgcctcgccgccgacctctccagccgcctcgaagacaccaaacgcctcgccggaaactttctgccgccggcgaccaggcgcctgctttccgccccgggcactccgcctctggcttgggtgggccaaccgaaccatgccttagccgccgccaccaccgcgactctgagctccgaccacgtggcgaagagcctagtcggcacggcggtgtatacggttagcaatgcgaacaatgagttcgtgcttatctctgaccccagtgaagccaagtccattggcctcctttgcttccgcaaagaagacgccgaagccttcctcgctcaggttcggactaggacacgagagttgagaagtccagcgaaggtcgtcccaatcactcttgaccaggtgtacatgctgaaggtagaaggaattgcatttaggtttttgcctgatcccgttcaaataaagaatgcacttgaggttcggactaggacacgagagttaagaagtccggcgaaggtcgtcccaatcactcttgaccaggtgtacatgctgaaggtagaaggaattgcatttaggtttttgcctgatccagttcaaataaagaatgcacttgagctcaaagctgcagacaggagtgcatttgacggagttcctgtttttcagtccgaccttctggttgtgaagaagaaaaacaagcgttactgcccaatatatttcactaaggaagatatagaaaaggaattgtcaaaggtttccagatcatcccgaggaccaggggtttctcaaaatattatggttggtagtctggaagatgttttgagaaaaatggagtcaagtgagaagaattcgggctgggaagatctgatttttattccacctggcaaaagctactcccaacacattcaagatgtggttaaaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tic22

Protein Analysis

323

Amino Acids

35.81

Weight (kDa)

9.46

Isoelectric Point (pI)

50.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33350 AT4G33350
fragaria_vesca	FvH4_2g34490
malus_domestica	MD08G1102400.v1.1 MD15G1083800.v1.1
prunus_persica	Prupe.1G436300_v2.0.a1
pyrus_communis	pycom08g08320 pycom15g07850 pycom15g07890
rosa_chinensis	RchiOBHm_Chr6g0307851
rosa_laevigata	RLG00000010693
rosa_multiflora	Rmu_sc0003252.1_g000014
rosa_roxburghii	Rroxscaffold_7G00160820
rosa_rugosa	Rorug06G0361400
rosa_samantha	Rh6AG470200 Rh6BG481200 Rh6CG486500 Rh6DG472700
rosa_wichuraiana	Rw6G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	144
AccI	GTMKAC	1 cut(s)	275
AccII	CGCG	1 cut(s)	224
AclWI	GGATC	2 cut(s)	491, 629
AcsI	RAATTY	1 cut(s)	892
AcuI	CTGAAG	2 cut(s)	482, 620
AcvI	CACGTG	1 cut(s)	244
AcyI	GRCGYC	2 cut(s)	145, 366
AfaI	GTAC	2 cut(s)	455, 593
AfiI	CCNNNNNNNGG	1 cut(s)	385
AgsI	TTSAA	3 cut(s)	506, 644, 953
AjnI	CCWGG	5 cut(s)	140, 447, 585, 820, 925
AleI	CACNNNNGTG	1 cut(s)	269
AluBI	AGCT	4 cut(s)	234, 664, 671, 936
AluI	AGCT	4 cut(s)	234, 664, 671, 936
Alw21I	GWGCWC	2 cut(s)	236, 666
AlwI	GGATC	2 cut(s)	491, 629
Ama87I	CYCGRG	2 cut(s)	160, 813
AoxI	GGCC	3 cut(s)	22, 187, 340
ApaI	GGGCCC	1 cut(s)	26
ApeKI	GCWGC	1 cut(s)	671
ApoI	RAATTY	1 cut(s)	892
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	4 cut(s)	22, 23, 187, 818
AsuC2I	CCSGG	2 cut(s)	161, 162
AvaI	CYCGRG	2 cut(s)	160, 813
AvaII	GGWCC	1 cut(s)	818
BaeGI	GKGCMC	2 cut(s)	26, 167
BanI	GGYRCC	1 cut(s)	144
BanII	GRGCYC	3 cut(s)	26, 236, 666
BauI	CACGAG	2 cut(s)	402, 540
BbrPI	CACGTG	1 cut(s)	244
BbsI	GAAGAC	2 cut(s)	105, 369
Bbv12I	GWGCWC	2 cut(s)	236, 666
BbvI	GCAGC	1 cut(s)	658
BceAI	ACGGC	1 cut(s)	282
BciT130I	CCWGG	5 cut(s)	142, 449, 587, 822, 927
BcnI	CCSGG	2 cut(s)	161, 162
BfaI	CTAG	3 cut(s)	257, 396, 534
BfmI	CTRYAG	1 cut(s)	672
BfoI	RGCGCY	1 cut(s)	148
BglI	GCCNNNNNGGC	1 cut(s)	261
BglII	AGATCT	1 cut(s)	907
BisI	GCNGC	6 cut(s)	75, 91, 131, 210, 213, 672
BlsI	GCNGC	6 cut(s)	76, 92, 132, 211, 214, 673
Bme1390I	CCNGG	7 cut(s)	142, 161, 162, 449, 587, 822, 927
Bme18I	GGWCC	1 cut(s)	818
BmeT110I	CYCGRG	2 cut(s)	160, 813
BmgT120I	GGNCC	4 cut(s)	22, 23, 187, 818
BmiI	GGNNCC	2 cut(s)	24, 146
BmrFI	CCNGG	7 cut(s)	142, 161, 162, 449, 587, 822, 927
BmrI	ACTGGG	1 cut(s)	315
BmuI	ACTGGG	1 cut(s)	315
BpiI	GAAGAC	2 cut(s)	105, 369
BpmI	CTGGAG	1 cut(s)	70
Bpu10I	CCTNAGC	2 cut(s)	205, 384
BpuEI	CTTGAG	2 cut(s)	542, 680
BpuMI	CCSGG	2 cut(s)	161, 162
BsaAI	YACGTR	1 cut(s)	244
BsaHI	GRCGYC	2 cut(s)	145, 366
BsaJI	CCNNGG	5 cut(s)	18, 159, 160, 814, 821
BsaXI	ACNNNNNCTCC	2 cut(s)	687, 717
Bsc4I	CCNNNNNNNGG	1 cut(s)	385
Bse118I	RCCGGY	1 cut(s)	133
Bse1I	ACTGG	2 cut(s)	321, 638
Bse3DI	GCAATG	1 cut(s)	292
BseBI	CCWGG	5 cut(s)	142, 449, 587, 822, 927
BseDI	CCNNGG	5 cut(s)	18, 159, 160, 814, 821
BseGI	GGATG	1 cut(s)	809
BseLI	CCNNNNNNNGG	1 cut(s)	385
BseMI	GCAATG	1 cut(s)	292
BseMII	CTCAG	2 cut(s)	221, 398
BseNI	ACTGG	2 cut(s)	321, 638
BseSI	GKGCMC	2 cut(s)	26, 167
BseXI	GCAGC	1 cut(s)	658
BseYI	CCCAGC	1 cut(s)	900
Bsh1236I	CGCG	1 cut(s)	224
BshFI	GGCC	3 cut(s)	24, 189, 342
BshNI	GGYRCC	1 cut(s)	144
BsiHKAI	GWGCWC	2 cut(s)	236, 666
BsiHKCI	CYCGRG	2 cut(s)	160, 813
BsiSI	CCGG	4 cut(s)	117, 134, 161, 557
BslFI	GGGAC	2 cut(s)	416, 554
BslI	CCNNNNNNNGG	1 cut(s)	385
BsmFI	GGGAC	2 cut(s)	416, 554
BsmI	GAATGC	2 cut(s)	520, 658
BsnI	GGCC	3 cut(s)	24, 189, 342
BsoBI	CYCGRG	2 cut(s)	160, 813
Bsp120I	GGGCCC	1 cut(s)	22
Bsp1286I	GDGCHC	4 cut(s)	26, 167, 236, 666
Bsp1407I	TGTACA	2 cut(s)	453, 591
Bsp143I	GATC	4 cut(s)	496, 634, 806, 907
BspANI	GGCC	3 cut(s)	24, 189, 342
BspCNI	CTCAG	2 cut(s)	222, 397
BspFNI	CGCG	1 cut(s)	224
BspLI	GGNNCC	2 cut(s)	24, 146
BspMAI	CTGCAG	1 cut(s)	676
BspPI	GGATC	2 cut(s)	491, 629
BspQI	GCTCTTC	1 cut(s)	245
BspT107I	GGYRCC	1 cut(s)	144
BsrDI	GCAATG	1 cut(s)	292
BsrFI	RCCGGY	1 cut(s)	133
BsrGI	TGTACA	2 cut(s)	453, 591
BsrI	ACTGG	2 cut(s)	321, 638
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	5 cut(s)	18, 159, 160, 814, 821
BssMI	GATC	4 cut(s)	496, 634, 806, 907
BssNAI	GTATAC	1 cut(s)	276
BssNI	GRCGYC	2 cut(s)	145, 366
BssSI	CACGAG	2 cut(s)	402, 540
BssT1I	CCWWGG	1 cut(s)	18
Bst1107I	GTATAC	1 cut(s)	276
Bst2BI	CACGAG	2 cut(s)	402, 540
Bst2UI	CCWGG	5 cut(s)	142, 449, 587, 822, 927
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	1 cut(s)	245
BstACI	GRCGYC	2 cut(s)	145, 366
BstAUI	TGTACA	2 cut(s)	453, 591
BstBAI	YACGTR	1 cut(s)	244
BstC8I	GCNNGC	2 cut(s)	135, 149
BstDEI	CTNAG	4 cut(s)	205, 230, 384, 768
BstENI	CCTNNNNNAGG	1 cut(s)	383
BstF5I	GGATG	1 cut(s)	809
BstFNI	CGCG	1 cut(s)	224
BstH2I	RGCGCY	1 cut(s)	148
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	4 cut(s)	499, 637, 809, 910
BstMBI	GATC	4 cut(s)	496, 634, 806, 907
BstMWI	GCNNNNNNNGC	5 cut(s)	209, 221, 261, 348, 380
BstNI	CCWGG	5 cut(s)	142, 449, 587, 822, 927
BstNSI	RCATGY	2 cut(s)	460, 598
BstSCI	CCNGG	7 cut(s)	140, 159, 160, 447, 585, 820, 925
BstSFI	CTRYAG	1 cut(s)	672
BstSLI	GKGCMC	2 cut(s)	26, 167
BstUI	CGCG	1 cut(s)	224
BstV1I	GCAGC	1 cut(s)	658
BstV2I	GAAGAC	2 cut(s)	105, 369
BstX2I	RGATCY	1 cut(s)	907
BstYI	RGATCY	1 cut(s)	907
BstZ17I	GTATAC	1 cut(s)	276
BsuRI	GGCC	3 cut(s)	24, 189, 342
BtsCI	GGATG	1 cut(s)	809
BtsI	GCAGTG	1 cut(s)	58
BtsIMutI	CAGTG	2 cut(s)	58, 328
Cac8I	GCNNGC	2 cut(s)	135, 149
CfoI	GCGC	1 cut(s)	147
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	4 cut(s)	22, 23, 187, 818
Cfr9I	CCCGGG	1 cut(s)	160
CseI	GACGC	1 cut(s)	374
CsiI	ACCWGGT	2 cut(s)	447, 585
Csp6I	GTAC	2 cut(s)	454, 592
CviAII	CATG	3 cut(s)	200, 457, 595
CviQI	GTAC	2 cut(s)	454, 592
DdeI	CTNAG	4 cut(s)	205, 230, 384, 768
DinI	GGCGCC	1 cut(s)	146
DpnI	GATC	4 cut(s)	498, 636, 808, 909
DpnII	GATC	4 cut(s)	496, 634, 806, 907
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
EciI	GGCGGA	3 cut(s)	56, 145, 159
Ecl136II	GAGCTC	2 cut(s)	234, 664
Eco130I	CCWWGG	1 cut(s)	18
Eco24I	GRGCYC	3 cut(s)	26, 236, 666
Eco47I	GGWCC	1 cut(s)	818
Eco53kI	GAGCTC	2 cut(s)	234, 664
Eco57I	CTGAAG	2 cut(s)	482, 620
Eco72I	CACGTG	1 cut(s)	244
Eco88I	CYCGRG	2 cut(s)	160, 813
EcoICRI	GAGCTC	2 cut(s)	234, 664
EcoNI	CCTNNNNNAGG	1 cut(s)	383
EcoO109I	RGGNCCY	1 cut(s)	23
EcoRI	GAATTC	1 cut(s)	892
EcoRII	CCWGG	5 cut(s)	140, 447, 585, 820, 925
EcoT14I	CCWWGG	1 cut(s)	18
EcoT38I	GRGCYC	3 cut(s)	26, 236, 666
EgeI	GGCGCC	1 cut(s)	146
EheI	GGCGCC	1 cut(s)	146
ErhI	CCWWGG	1 cut(s)	18
FaeI	CATG	3 cut(s)	203, 460, 598
FaiI	YATR	8 cut(s)	50, 201, 276, 458, 596, 760, 779, 842
FaqI	GGGAC	2 cut(s)	416, 554
FatI	CATG	3 cut(s)	199, 456, 594
FblI	GTMKAC	1 cut(s)	275
Fnu4HI	GCNGC	6 cut(s)	75, 91, 131, 210, 213, 672
FokI	GGATG	1 cut(s)	796
FriOI	GRGCYC	3 cut(s)	26, 236, 666
Fsp4HI	GCNGC	6 cut(s)	75, 91, 131, 210, 213, 672
FspBI	CTAG	3 cut(s)	257, 396, 534
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	6 cut(s)	75, 91, 131, 210, 213, 672
GsaI	CCCAGC	1 cut(s)	904
GsuI	CTGGAG	1 cut(s)	70
HaeII	RGCGCY	1 cut(s)	148
HaeIII	GGCC	3 cut(s)	24, 189, 342
HapII	CCGG	4 cut(s)	117, 134, 161, 557
HgaI	GACGC	1 cut(s)	374
HhaI	GCGC	1 cut(s)	147
Hin1I	GRCGYC	2 cut(s)	145, 366
Hin1II	CATG	3 cut(s)	203, 460, 598
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HinfI	GANTC	3 cut(s)	5, 226, 878
HpaII	CCGG	4 cut(s)	117, 134, 161, 557
Hpy166II	GTNNAC	3 cut(s)	276, 454, 592
Hpy188I	TCNGA	7 cut(s)	231, 238, 316, 393, 531, 715, 912
Hpy188III	TCNNGA	6 cut(s)	443, 581, 804, 813, 854, 953
Hpy8I	GTNNAC	3 cut(s)	276, 454, 592
HpyAV	CCTTC	9 cut(s)	55, 385, 418, 457, 464, 556, 595, 602, 728
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	6 cut(s)	479, 518, 617, 656, 674, 686
HpyF10VI	GCNNNNNNNGC	5 cut(s)	209, 221, 261, 348, 380
HpyF3I	CTNAG	4 cut(s)	205, 230, 384, 768
HpySE526I	ACGT	1 cut(s)	243
Hsp92I	GRCGYC	2 cut(s)	145, 366
Hsp92II	CATG	3 cut(s)	203, 460, 598
HspAI	GCGC	1 cut(s)	145
KasI	GGCGCC	1 cut(s)	144
KroI	GCCGGC	1 cut(s)	133
KroNI	GCCGGC	1 cut(s)	135
Kzo9I	GATC	4 cut(s)	496, 634, 806, 907
LguI	GCTCTTC	1 cut(s)	245
LmnI	GCTCC	1 cut(s)	239
Lsp1109I	GCAGC	1 cut(s)	658
MabI	ACCWGGT	2 cut(s)	447, 585
MaeI	CTAG	3 cut(s)	257, 396, 534
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	1 cut(s)	746
MalI	GATC	4 cut(s)	498, 636, 808, 909
MboI	GATC	4 cut(s)	496, 634, 806, 907
MboII	GAAGA	9 cut(s)	110, 262, 374, 742, 745, 785, 869, 901, 917
MflI	RGATCY	1 cut(s)	907
MhlI	GDGCHC	4 cut(s)	26, 167, 236, 666
MluCI	AATT	4 cut(s)	474, 612, 788, 892
Mly113I	GGCGCC	1 cut(s)	145
MlyI	GAGTC	3 cut(s)	14, 220, 887
MmeI	TCCRAC	2 cut(s)	261, 738
MreI	CGCCGGCG	1 cut(s)	133
MroNI	GCCGGC	1 cut(s)	133
MseI	TTAA	2 cut(s)	548, 963
MslI	CAYNNNNRTG	1 cut(s)	269
MspI	CCGG	4 cut(s)	117, 134, 161, 557
MspR9I	CCNGG	7 cut(s)	142, 161, 162, 449, 587, 822, 927
Mva1269I	GAATGC	2 cut(s)	520, 658
MvaI	CCWGG	5 cut(s)	142, 449, 587, 822, 927
MvnI	CGCG	1 cut(s)	224
MwoI	GCNNNNNNNGC	5 cut(s)	209, 221, 261, 348, 380
NaeI	GCCGGC	1 cut(s)	135
NarI	GGCGCC	1 cut(s)	145
NciI	CCSGG	2 cut(s)	161, 162
NdeII	GATC	4 cut(s)	496, 634, 806, 907
NgoMIV	GCCGGC	1 cut(s)	133
NlaIII	CATG	3 cut(s)	203, 460, 598
NlaIV	GGNNCC	2 cut(s)	24, 146
NspI	RCATGY	2 cut(s)	460, 598
OliI	CACNNNNGTG	1 cut(s)	269
PciSI	GCTCTTC	1 cut(s)	245
PctI	GAATGC	2 cut(s)	520, 658
PdiI	GCCGGC	1 cut(s)	135
PkrI	GCNGC	6 cut(s)	76, 92, 132, 211, 214, 673
PleI	GAGTC	3 cut(s)	13, 220, 886
PluTI	GGCGCC	1 cut(s)	148
PmaCI	CACGTG	1 cut(s)	244
PmlI	CACGTG	1 cut(s)	244
PpsI	GAGTC	3 cut(s)	13, 220, 886
Ppu21I	YACGTR	1 cut(s)	244
Psp124BI	GAGCTC	2 cut(s)	236, 666
Psp6I	CCWGG	5 cut(s)	140, 447, 585, 820, 925
PspCI	CACGTG	1 cut(s)	244
PspFI	CCCAGC	1 cut(s)	900
PspGI	CCWGG	5 cut(s)	140, 447, 585, 820, 925
PspN4I	GGNNCC	2 cut(s)	24, 146
PspOMI	GGGCCC	1 cut(s)	22
PspPI	GGNCC	4 cut(s)	22, 23, 187, 818
PstI	CTGCAG	1 cut(s)	676
PsuI	RGATCY	1 cut(s)	907
RsaI	GTAC	2 cut(s)	455, 593
RsaNI	GTAC	2 cut(s)	454, 592
RseI	CAYNNNNRTG	1 cut(s)	269
SacI	GAGCTC	2 cut(s)	236, 666
SapI	GCTCTTC	1 cut(s)	245
SaqAI	TTAA	2 cut(s)	548, 963
SatI	GCNGC	6 cut(s)	75, 91, 131, 210, 213, 672
Sau3AI	GATC	4 cut(s)	496, 634, 806, 907
Sau96I	GGNCC	4 cut(s)	22, 23, 187, 818
SchI	GAGTC	3 cut(s)	14, 220, 887
ScrFI	CCNGG	7 cut(s)	142, 161, 162, 449, 587, 822, 927
SduI	GDGCHC	4 cut(s)	26, 167, 236, 666
SexAI	ACCWGGT	2 cut(s)	447, 585
SfcI	CTRYAG	1 cut(s)	672
SfoI	GGCGCC	1 cut(s)	146
SgrAI	CRCCGGYG	1 cut(s)	133
SinI	GGWCC	1 cut(s)	818
SmaI	CCCGGG	1 cut(s)	162
SmiMI	CAYNNNNRTG	1 cut(s)	269
SmlI	CTYRAG	2 cut(s)	521, 659
SmoI	CTYRAG	2 cut(s)	521, 659
Sse9I	AATT	4 cut(s)	474, 612, 788, 892
SspDI	GGCGCC	1 cut(s)	144
SspI	AATATT	1 cut(s)	838
SspMI	CTAG	3 cut(s)	257, 396, 534
SstI	GAGCTC	2 cut(s)	236, 666
StyD4I	CCNGG	7 cut(s)	140, 159, 160, 447, 585, 820, 925
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	1 cut(s)	96
TasI	AATT	4 cut(s)	474, 612, 788, 892
TatI	WGTACW	2 cut(s)	453, 591
TauI	GCSGC	5 cut(s)	77, 93, 133, 212, 215
Tru1I	TTAA	2 cut(s)	548, 963
Tru9I	TTAA	2 cut(s)	548, 963
TscAI	CASTG	2 cut(s)	65, 328
TseI	GCWGC	1 cut(s)	671
TspDTI	ATGAA	1 cut(s)	37
TspGWI	ACGGA	1 cut(s)	708
TspMI	CCCGGG	1 cut(s)	160
TspRI	CASTG	2 cut(s)	65, 328
VpaK11BI	GGWCC	1 cut(s)	818
XagI	CCTNNNNNAGG	1 cut(s)	383
XapI	RAATTY	1 cut(s)	892
XceI	RCATGY	2 cut(s)	460, 598
XmaI	CCCGGG	1 cut(s)	160
XmiI	GTMKAC	1 cut(s)	275
XspI	CTAG	3 cut(s)	257, 396, 534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.