RchiOBHm_Chr6g0307851

Protein TIC 22, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0012495
Physical Location & Seq
Forward (+)
66070577 .. 66073674
3098 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27678

Sequence Viewer

Length: 945 bp
ATGCAAACACAAGTGAAAATAACACACCAAGAATCCCTCGGCAAAATTATCAAAAACGAAAACCACCGTTTAGCTCGCTTCTACTCTCTCTCTCTCTCTCTCACACACTCACTGATGGAGTCCCCAAAGCCCTTGGGCCCTCTGCTCTCCCTCTCCACCTTCATACACCACCACTGCCTCCGCCTCGCCGCCGACCTCTCCAGCCGCCTCGAAGACACCAAACGCCTCGCCGGAAACTTCCTGCCGCCGGCGACCAGGCGCCTGCTTTCCGCCCCGGGCACTCCGCCTCTGGCTTGGGTGGGCCAACCGAACCATGCCTTGGCCGCCACCACCGCGACTCTGAGCTCCGACCACGTGGCGAAGAGCCTAGTCGGCACGGCGGTGTATACGGTTAGCAATGCGAACAATGAGTTCGTGCTTATCTCTGACCCCAGTGAAGCCAAGTCCATTGGCCTCCTTTGCTTCCGCAAAGAAGACGCCGAAGCCTTCCTCGCTCAGGTTCGGACTAGGACGCGAGAGTTGAGAAGTCCAGCGAAGGTCGTCCCAATCACTCTTGACCAGGTGTACATGCTGAAGGTAGAAGGAATTGCATTTAGGTTTTTGCCTGATCCAGTTCAAATAAAGAATGCACTTGAGCTCAAAGCTGCGGACAGGAGTGCATTTGATGGAGTTCCTGTTTTTCAGTCCGACCTTCTGGTTGTGAAGAAGAAAAACAAGCGTTACTGCCCAATATATTTCACTAAGGAAGATATAGAAAAGGAATTGTCAAAGGTTTCCAGATCATCCCGAGGACCAGGGGTTTCTCAAAATATTATGGTTGGTAGTCTGGAAGATGTTTTGAGAAAAATGGAGTCAAGTGAGAAGAATTCGGGCTGGGAAGATCTGATTTTTATTCCACCTGGCAAAAGCTACTCCCAACATATTCAAGATGTGGTTAAAAAATGA

Protein Analysis

314

Amino Acids

34.85

Weight (kDa)

9.46

Isoelectric Point (pI)

46.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tic22 PF04278 48 - 310 9.2e-113 Tic22-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33350 AT4G33350
fragaria_vesca FvH4_2g34490
malus_domestica MD08G1102400.v1.1 MD15G1083800.v1.1
prunus_persica Prupe.1G436300_v2.0.a1
pyrus_communis pycom08g08320 pycom15g07850 pycom15g07890
rosa_chinensis RchiOBHm_Chr6g0307851
rosa_laevigata RLG00000010693
rosa_multiflora Rmu_sc0003252.1_g000014
rosa_roxburghii Rroxscaffold_7G00160820
rosa_rugosa Rorug06G0361400
rosa_samantha Rh6AG470200 Rh6BG481200 Rh6CG486500 Rh6DG472700
rosa_wichuraiana Rw6G041050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 258
AccB7I CCANNNNNTGG 1 cut(s) 319
AccI GTMKAC 1 cut(s) 386
AccII CGCG 2 cut(s) 335, 514
AclWI GGATC 1 cut(s) 602
AcoI YGGCCR 1 cut(s) 321
AcsI RAATTY 1 cut(s) 865
AcuI CTGAAG 1 cut(s) 593
AcvI CACGTG 1 cut(s) 355
AcyI GRCGYC 2 cut(s) 259, 477
AfaI GTAC 1 cut(s) 566
AfiI CCNNNNNNNGG 3 cut(s) 247, 319, 496
AgsI TTSAA 2 cut(s) 617, 926
AjnI CCWGG 4 cut(s) 254, 558, 793, 898
AjuI GAANNNNNNNTTGG 2 cut(s) 302, 334
AleI CACNNNNGTG 1 cut(s) 380
AluBI AGCT 5 cut(s) 74, 345, 637, 644, 909
AluI AGCT 5 cut(s) 74, 345, 637, 644, 909
Alw21I GWGCWC 2 cut(s) 347, 639
AlwI GGATC 1 cut(s) 602
Ama87I CYCGRG 2 cut(s) 274, 786
AoxI GGCC 4 cut(s) 136, 301, 321, 451
ApaI GGGCCC 1 cut(s) 140
ApeKI GCWGC 1 cut(s) 644
ApoI RAATTY 1 cut(s) 865
AspLEI GCGC 1 cut(s) 261
AspS9I GGNCC 4 cut(s) 136, 137, 301, 791
AsuC2I CCSGG 2 cut(s) 275, 276
AvaI CYCGRG 2 cut(s) 274, 786
AvaII GGWCC 1 cut(s) 791
BaeGI GKGCMC 2 cut(s) 140, 281
BanI GGYRCC 1 cut(s) 258
BanII GRGCYC 3 cut(s) 140, 347, 639
BbrPI CACGTG 1 cut(s) 355
BbsI GAAGAC 2 cut(s) 219, 480
Bbv12I GWGCWC 2 cut(s) 347, 639
BbvI GCAGC 1 cut(s) 631
BccI CCATC 2 cut(s) 109, 659
BceAI ACGGC 1 cut(s) 393
BciT130I CCWGG 4 cut(s) 256, 560, 795, 900
BcnI CCSGG 2 cut(s) 275, 276
BfaI CTAG 2 cut(s) 368, 507
BfoI RGCGCY 1 cut(s) 262
BglI GCCNNNNNGGC 1 cut(s) 372
BglII AGATCT 1 cut(s) 880
BisI GCNGC 5 cut(s) 189, 205, 245, 324, 645
BlsI GCNGC 5 cut(s) 190, 206, 246, 325, 646
Bme1390I CCNGG 6 cut(s) 256, 275, 276, 560, 795, 900
Bme18I GGWCC 1 cut(s) 791
BmeT110I CYCGRG 2 cut(s) 274, 786
BmgT120I GGNCC 4 cut(s) 136, 137, 301, 791
BmiI GGNNCC 2 cut(s) 138, 260
BmrFI CCNGG 6 cut(s) 256, 275, 276, 560, 795, 900
BmrI ACTGGG 1 cut(s) 426
BmuI ACTGGG 1 cut(s) 426
BpiI GAAGAC 2 cut(s) 219, 480
BpmI CTGGAG 1 cut(s) 184
Bpu10I CCTNAGC 1 cut(s) 495
BpuEI CTTGAG 1 cut(s) 653
BpuMI CCSGG 2 cut(s) 275, 276
BsaAI YACGTR 1 cut(s) 355
BsaHI GRCGYC 2 cut(s) 259, 477
BsaJI CCNNGG 7 cut(s) 37, 132, 273, 274, 318, 787, 794
BsaXI ACNNNNNCTCC 2 cut(s) 660, 690
Bsc4I CCNNNNNNNGG 3 cut(s) 247, 319, 496
Bse118I RCCGGY 1 cut(s) 247
Bse1I ACTGG 2 cut(s) 432, 611
Bse3DI GCAATG 1 cut(s) 403
BseBI CCWGG 4 cut(s) 256, 560, 795, 900
BseDI CCNNGG 7 cut(s) 37, 132, 273, 274, 318, 787, 794
BseGI GGATG 1 cut(s) 782
BseLI CCNNNNNNNGG 3 cut(s) 247, 319, 496
BseMI GCAATG 1 cut(s) 403
BseMII CTCAG 2 cut(s) 332, 509
BseNI ACTGG 2 cut(s) 432, 611
BseSI GKGCMC 2 cut(s) 140, 281
BseXI GCAGC 1 cut(s) 631
BseYI CCCAGC 1 cut(s) 873
Bsh1236I CGCG 2 cut(s) 335, 514
BshFI GGCC 4 cut(s) 138, 303, 323, 453
BshNI GGYRCC 1 cut(s) 258
BsiHKAI GWGCWC 2 cut(s) 347, 639
BsiHKCI CYCGRG 2 cut(s) 274, 786
BsiSI CCGG 3 cut(s) 231, 248, 275
BslFI GGGAC 2 cut(s) 106, 527
BslI CCNNNNNNNGG 3 cut(s) 247, 319, 496
BsmFI GGGAC 2 cut(s) 106, 527
BsmI GAATGC 1 cut(s) 631
BsnI GGCC 4 cut(s) 138, 303, 323, 453
BsoBI CYCGRG 2 cut(s) 274, 786
Bsp120I GGGCCC 1 cut(s) 136
Bsp1286I GDGCHC 4 cut(s) 140, 281, 347, 639
Bsp1407I TGTACA 1 cut(s) 564
Bsp143I GATC 3 cut(s) 607, 779, 880
BspANI GGCC 4 cut(s) 138, 303, 323, 453
BspCNI CTCAG 2 cut(s) 333, 508
BspFNI CGCG 2 cut(s) 335, 514
BspLI GGNNCC 2 cut(s) 138, 260
BspPI GGATC 1 cut(s) 602
BspQI GCTCTTC 1 cut(s) 356
BspT107I GGYRCC 1 cut(s) 258
BsrDI GCAATG 1 cut(s) 403
BsrFI RCCGGY 1 cut(s) 247
BsrGI TGTACA 1 cut(s) 564
BsrI ACTGG 2 cut(s) 432, 611
BssAI RCCGGY 1 cut(s) 247
BssECI CCNNGG 7 cut(s) 37, 132, 273, 274, 318, 787, 794
BssMI GATC 3 cut(s) 607, 779, 880
BssNAI GTATAC 1 cut(s) 387
BssNI GRCGYC 2 cut(s) 259, 477
BssT1I CCWWGG 2 cut(s) 132, 318
Bst1107I GTATAC 1 cut(s) 387
Bst2UI CCWGG 4 cut(s) 256, 560, 795, 900
Bst4CI ACNGT 2 cut(s) 68, 391
Bst6I CTCTTC 1 cut(s) 356
BstACI GRCGYC 2 cut(s) 259, 477
BstAUI TGTACA 1 cut(s) 564
BstBAI YACGTR 1 cut(s) 355
BstC8I GCNNGC 3 cut(s) 76, 249, 263
BstDEI CTNAG 3 cut(s) 341, 495, 741
BstENI CCTNNNNNAGG 1 cut(s) 494
BstF5I GGATG 1 cut(s) 782
BstFNI CGCG 2 cut(s) 335, 514
BstH2I RGCGCY 1 cut(s) 262
BstHHI GCGC 1 cut(s) 261
BstKTI GATC 3 cut(s) 610, 782, 883
BstMBI GATC 3 cut(s) 607, 779, 880
BstMWI GCNNNNNNNGC 5 cut(s) 323, 332, 372, 459, 491
BstNI CCWGG 4 cut(s) 256, 560, 795, 900
BstNSI RCATGY 1 cut(s) 571
BstSCI CCNGG 6 cut(s) 254, 273, 274, 558, 793, 898
BstSLI GKGCMC 2 cut(s) 140, 281
BstUI CGCG 2 cut(s) 335, 514
BstV1I GCAGC 1 cut(s) 631
BstV2I GAAGAC 2 cut(s) 219, 480
BstX2I RGATCY 1 cut(s) 880
BstYI RGATCY 1 cut(s) 880
BstZ17I GTATAC 1 cut(s) 387
BsuRI GGCC 4 cut(s) 138, 303, 323, 453
BtsCI GGATG 1 cut(s) 782
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 3 cut(s) 110, 172, 439
Cac8I GCNNGC 3 cut(s) 76, 249, 263
CfoI GCGC 1 cut(s) 261
Cfr10I RCCGGY 1 cut(s) 247
Cfr13I GGNCC 4 cut(s) 136, 137, 301, 791
Cfr9I CCCGGG 1 cut(s) 274
CseI GACGC 2 cut(s) 485, 520
CsiI ACCWGGT 1 cut(s) 558
Csp6I GTAC 1 cut(s) 565
CviAII CATG 2 cut(s) 314, 568
CviQI GTAC 1 cut(s) 565
DdeI CTNAG 3 cut(s) 341, 495, 741
DinI GGCGCC 1 cut(s) 260
DpnI GATC 3 cut(s) 609, 781, 882
DpnII GATC 3 cut(s) 607, 779, 880
EaeI YGGCCR 1 cut(s) 321
Eam1104I CTCTTC 1 cut(s) 356
EarI CTCTTC 1 cut(s) 356
EciI GGCGGA 3 cut(s) 170, 259, 273
Ecl136II GAGCTC 2 cut(s) 345, 637
Eco130I CCWWGG 2 cut(s) 132, 318
Eco24I GRGCYC 3 cut(s) 140, 347, 639
Eco47I GGWCC 1 cut(s) 791
Eco53kI GAGCTC 2 cut(s) 345, 637
Eco57I CTGAAG 1 cut(s) 593
Eco72I CACGTG 1 cut(s) 355
Eco88I CYCGRG 2 cut(s) 274, 786
EcoICRI GAGCTC 2 cut(s) 345, 637
EcoNI CCTNNNNNAGG 1 cut(s) 494
EcoO109I RGGNCCY 1 cut(s) 137
EcoRI GAATTC 1 cut(s) 865
EcoRII CCWGG 4 cut(s) 254, 558, 793, 898
EcoT14I CCWWGG 2 cut(s) 132, 318
EcoT38I GRGCYC 3 cut(s) 140, 347, 639
EgeI GGCGCC 1 cut(s) 260
EheI GGCGCC 1 cut(s) 260
ErhI CCWWGG 2 cut(s) 132, 318
FaeI CATG 2 cut(s) 317, 571
FaiI YATR 8 cut(s) 164, 315, 387, 569, 733, 752, 815, 921
FaqI GGGAC 2 cut(s) 106, 527
FatI CATG 2 cut(s) 313, 567
FblI GTMKAC 1 cut(s) 386
Fnu4HI GCNGC 5 cut(s) 189, 205, 245, 324, 645
FokI GGATG 1 cut(s) 769
FriOI GRGCYC 3 cut(s) 140, 347, 639
Fsp4HI GCNGC 5 cut(s) 189, 205, 245, 324, 645
FspBI CTAG 2 cut(s) 368, 507
GlaI GCGC 1 cut(s) 260
GluI GCNGC 5 cut(s) 189, 205, 245, 324, 645
GsaI CCCAGC 1 cut(s) 877
GsuI CTGGAG 1 cut(s) 184
HaeII RGCGCY 1 cut(s) 262
HaeIII GGCC 4 cut(s) 138, 303, 323, 453
HapII CCGG 3 cut(s) 231, 248, 275
HgaI GACGC 2 cut(s) 485, 520
HhaI GCGC 1 cut(s) 261
Hin1I GRCGYC 2 cut(s) 259, 477
Hin1II CATG 2 cut(s) 317, 571
Hin6I GCGC 1 cut(s) 259
HinP1I GCGC 1 cut(s) 259
HinfI GANTC 4 cut(s) 32, 119, 337, 851
HpaII CCGG 3 cut(s) 231, 248, 275
Hpy166II GTNNAC 2 cut(s) 387, 565
Hpy188I TCNGA 6 cut(s) 342, 349, 427, 504, 688, 885
Hpy188III TCNNGA 5 cut(s) 554, 777, 786, 827, 926
Hpy8I GTNNAC 2 cut(s) 387, 565
HpyAV CCTTC 6 cut(s) 169, 496, 529, 568, 575, 701
HpyCH4III ACNGT 2 cut(s) 68, 391
HpyCH4IV ACGT 1 cut(s) 354
HpyCH4V TGCA 4 cut(s) 4, 590, 629, 659
HpyF10VI GCNNNNNNNGC 5 cut(s) 323, 332, 372, 459, 491
HpyF3I CTNAG 3 cut(s) 341, 495, 741
HpySE526I ACGT 1 cut(s) 354
Hsp92I GRCGYC 2 cut(s) 259, 477
Hsp92II CATG 2 cut(s) 317, 571
HspAI GCGC 1 cut(s) 259
KasI GGCGCC 1 cut(s) 258
KroI GCCGGC 1 cut(s) 247
KroNI GCCGGC 1 cut(s) 249
Kzo9I GATC 3 cut(s) 607, 779, 880
LguI GCTCTTC 1 cut(s) 356
LmnI GCTCC 1 cut(s) 350
Lsp1109I GCAGC 1 cut(s) 631
MabI ACCWGGT 1 cut(s) 558
MaeI CTAG 2 cut(s) 368, 507
MaeII ACGT 1 cut(s) 354
MaeIII GTNAC 1 cut(s) 719
MalI GATC 3 cut(s) 609, 781, 882
MboI GATC 3 cut(s) 607, 779, 880
MboII GAAGA 9 cut(s) 224, 373, 485, 715, 718, 758, 842, 874, 890
MflI RGATCY 1 cut(s) 880
MhlI GDGCHC 4 cut(s) 140, 281, 347, 639
MluCI AATT 4 cut(s) 45, 585, 761, 865
Mly113I GGCGCC 1 cut(s) 259
MlyI GAGTC 3 cut(s) 128, 331, 860
MmeI TCCRAC 2 cut(s) 372, 711
MreI CGCCGGCG 1 cut(s) 247
MroNI GCCGGC 1 cut(s) 247
MseI TTAA 1 cut(s) 936
MslI CAYNNNNRTG 1 cut(s) 380
MspI CCGG 3 cut(s) 231, 248, 275
MspR9I CCNGG 6 cut(s) 256, 275, 276, 560, 795, 900
Mva1269I GAATGC 1 cut(s) 631
MvaI CCWGG 4 cut(s) 256, 560, 795, 900
MvnI CGCG 2 cut(s) 335, 514
MwoI GCNNNNNNNGC 5 cut(s) 323, 332, 372, 459, 491
NaeI GCCGGC 1 cut(s) 249
NarI GGCGCC 1 cut(s) 259
NciI CCSGG 2 cut(s) 275, 276
NdeII GATC 3 cut(s) 607, 779, 880
NgoMIV GCCGGC 1 cut(s) 247
NlaIII CATG 2 cut(s) 317, 571
NlaIV GGNNCC 2 cut(s) 138, 260
NmeAIII GCCGAG 1 cut(s) 18
NspI RCATGY 1 cut(s) 571
OliI CACNNNNGTG 1 cut(s) 380
PciSI GCTCTTC 1 cut(s) 356
PctI GAATGC 1 cut(s) 631
PdiI GCCGGC 1 cut(s) 249
PfeI GAWTC 1 cut(s) 32
PflMI CCANNNNNTGG 1 cut(s) 319
PkrI GCNGC 5 cut(s) 190, 206, 246, 325, 646
PleI GAGTC 3 cut(s) 127, 331, 859
PluTI GGCGCC 1 cut(s) 262
PmaCI CACGTG 1 cut(s) 355
PmlI CACGTG 1 cut(s) 355
PpsI GAGTC 3 cut(s) 127, 331, 859
Ppu21I YACGTR 1 cut(s) 355
Psp124BI GAGCTC 2 cut(s) 347, 639
Psp6I CCWGG 4 cut(s) 254, 558, 793, 898
PspCI CACGTG 1 cut(s) 355
PspFI CCCAGC 1 cut(s) 873
PspGI CCWGG 4 cut(s) 254, 558, 793, 898
PspN4I GGNNCC 2 cut(s) 138, 260
PspOMI GGGCCC 1 cut(s) 136
PspPI GGNCC 4 cut(s) 136, 137, 301, 791
PsuI RGATCY 1 cut(s) 880
RsaI GTAC 1 cut(s) 566
RsaNI GTAC 1 cut(s) 565
RseI CAYNNNNRTG 1 cut(s) 380
SacI GAGCTC 2 cut(s) 347, 639
SapI GCTCTTC 1 cut(s) 356
SaqAI TTAA 1 cut(s) 936
SatI GCNGC 5 cut(s) 189, 205, 245, 324, 645
Sau3AI GATC 3 cut(s) 607, 779, 880
Sau96I GGNCC 4 cut(s) 136, 137, 301, 791
SchI GAGTC 3 cut(s) 128, 331, 860
ScrFI CCNGG 6 cut(s) 256, 275, 276, 560, 795, 900
SduI GDGCHC 4 cut(s) 140, 281, 347, 639
SexAI ACCWGGT 1 cut(s) 558
SfoI GGCGCC 1 cut(s) 260
SgrAI CRCCGGYG 1 cut(s) 247
SinI GGWCC 1 cut(s) 791
SmaI CCCGGG 1 cut(s) 276
SmiMI CAYNNNNRTG 1 cut(s) 380
SmlI CTYRAG 1 cut(s) 632
SmoI CTYRAG 1 cut(s) 632
Sse9I AATT 4 cut(s) 45, 585, 761, 865
SspDI GGCGCC 1 cut(s) 258
SspI AATATT 1 cut(s) 811
SspMI CTAG 2 cut(s) 368, 507
SstI GAGCTC 2 cut(s) 347, 639
StyD4I CCNGG 6 cut(s) 254, 273, 274, 558, 793, 898
StyI CCWWGG 2 cut(s) 132, 318
TaaI ACNGT 2 cut(s) 68, 391
TaiI ACGT 1 cut(s) 357
TaqI TCGA 1 cut(s) 210
TasI AATT 4 cut(s) 45, 585, 761, 865
TatI WGTACW 1 cut(s) 564
TauI GCSGC 4 cut(s) 191, 207, 247, 326
TfiI GAWTC 1 cut(s) 32
Tru1I TTAA 1 cut(s) 936
Tru9I TTAA 1 cut(s) 936
TscAI CASTG 3 cut(s) 117, 179, 439
TseI GCWGC 1 cut(s) 644
TspDTI ATGAA 1 cut(s) 151
TspMI CCCGGG 1 cut(s) 274
TspRI CASTG 3 cut(s) 117, 179, 439
Van91I CCANNNNNTGG 1 cut(s) 319
VpaK11BI GGWCC 1 cut(s) 791
XagI CCTNNNNNAGG 1 cut(s) 494
XapI RAATTY 1 cut(s) 865
XceI RCATGY 1 cut(s) 571
XmaI CCCGGG 1 cut(s) 274
XmiI GTMKAC 1 cut(s) 386
XspI CTAG 2 cut(s) 368, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.