Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0012495

Physical Location & Seq

Genomic Coordinates Reverse (-)

6683444 .. 6686231

Gene Structure 2788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g08320.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGAATGGGCCACCGAACTGTATGGGCTGGATTGTATTGGGCAACTAATTACAATTCAAACTGGGTTGCAATACTTATTTATCGAAACAACCATTCTGCGCTACTCGTCAGTCGTCACTCGCACTGAAACGATGGAGTCCCCAAAGCCCTACCCGCGCCCAAACCCTCTGCTATCGCTCTCCAGCTTCATACACCAGCACTGCCTCCGCCTCGGCGCCGAGCTCTCCACCCGTCTCGAAGATACCAAGCGGCTCGCCGGAACCATAGCAGGCAACTTCGCGCCGGCGGCGAGCAGGCGCATGCGTTCGGCGCCGGTTTCTCCTCCCTTCGCGTGGCTGGCTCAAAGAAATCACGCTCTGGCCGCTACCCTCAGCTCTGACCACGTGGCGAAGAGCCTGGCCGGGACGGCCGTATATACGGTTAGCAATTCGAACAATGAGTTCGTGCTCATCTCTGATCCCAATGAGGCCAAGTCCATTGGATTGCTTTGCTTTCGGCACGAAGATGCCGAAGCATTCCTCGCTCAAGTTCGATCGAGGAGAGAATTACGAAGTGCGGCTAAAGTTGTCCCGATTACTCTTGACCAGGTGTACATGCTGAAGGTTGAAGGAATTGCATTCCGGTTTCTGCCTGACCCAGTTCAAATAAGGAATGCACTTGAGCTCAAATCCGCTGACAGGAGTGCATTTGATGGAGTTCCTGTTTTTCAGTCCGACCTTCTGGTTATGAAGAAGAAAAACAAGCGTTACTGCCCAATATATTTCACCAAGGAAGATATTGAAAAAGAATTGTCAAAGGTATCCAGAGCATCCAGAGGACCAGGCGTTTCTCAACATATAATGGTTGGCAGTTTGGAAGATGTTTTGAGAAAAATGGAGTCAAGTGAAAAGAATTCAGGCTGGGAAGACCTGATTTTCATTCCACCAGGAAAAAGCTACTCACAGCACATTCAAGATGTGGTGAAACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tic22

Protein Analysis

324

Amino Acids

36.08

Weight (kDa)

8.94

Isoelectric Point (pI)

52.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33350 AT4G33350
fragaria_vesca	FvH4_2g34490
malus_domestica	MD08G1102400.v1.1 MD15G1083800.v1.1
prunus_persica	Prupe.1G436300_v2.0.a1
pyrus_communis	pycom08g08320 pycom15g07850 pycom15g07890
rosa_chinensis	RchiOBHm_Chr6g0307851
rosa_laevigata	RLG00000010693
rosa_multiflora	Rmu_sc0003252.1_g000014
rosa_roxburghii	Rroxscaffold_7G00160820
rosa_rugosa	Rorug06G0361400
rosa_samantha	Rh6AG470200 Rh6BG481200 Rh6CG486500 Rh6DG472700
rosa_wichuraiana	Rw6G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	215, 310
AccII	CGCG	3 cut(s)	157, 281, 332
AciI	CCGC	7 cut(s)	155, 208, 250, 287, 363, 557, 672
AclWI	GGATC	1 cut(s)	452
AcoI	YGGCCR	3 cut(s)	360, 399, 408
AcsI	RAATTY	1 cut(s)	892
AcuI	CTGAAG	1 cut(s)	620
AcvI	CACGTG	1 cut(s)	385
AcyI	GRCGYC	2 cut(s)	216, 311
AfaI	GTAC	1 cut(s)	593
AfiI	CCNNNNNNNGG	2 cut(s)	333, 678
AgsI	TTSAA	5 cut(s)	59, 608, 644, 782, 953
AjnI	CCWGG	4 cut(s)	396, 585, 820, 925
AluBI	AGCT	5 cut(s)	186, 223, 375, 664, 936
AluI	AGCT	5 cut(s)	186, 223, 375, 664, 936
Alw21I	GWGCWC	3 cut(s)	225, 450, 666
Alw26I	GTCTC	1 cut(s)	239
AlwI	GGATC	1 cut(s)	452
AoxI	GGCC	5 cut(s)	9, 360, 399, 408, 468
ApoI	RAATTY	1 cut(s)	892
AspLEI	GCGC	6 cut(s)	102, 159, 218, 283, 300, 313
AspS9I	GGNCC	2 cut(s)	9, 818
AsuC2I	CCSGG	1 cut(s)	403
AsuHPI	GGTGA	1 cut(s)	757
AsuII	TTCGAA	1 cut(s)	431
AvaII	GGWCC	1 cut(s)	818
BanI	GGYRCC	2 cut(s)	215, 310
BanII	GRGCYC	2 cut(s)	225, 666
BbrPI	CACGTG	1 cut(s)	385
BbsI	GAAGAC	1 cut(s)	912
Bbv12I	GWGCWC	3 cut(s)	225, 450, 666
BbvCI	CCTCAGC	1 cut(s)	371
BccI	CCATC	2 cut(s)	127, 686
BceAI	ACGGC	2 cut(s)	395, 423
BciT130I	CCWGG	4 cut(s)	398, 587, 822, 927
BciVI	GTATCC	1 cut(s)	811
BcnI	CCSGG	1 cut(s)	403
BcoDI	GTCTC	1 cut(s)	239
BfoI	RGCGCY	2 cut(s)	219, 314
BfuI	GTATCC	1 cut(s)	811
BglI	GCCNNNNNGGC	1 cut(s)	407
BisI	GCNGC	4 cut(s)	251, 288, 363, 558
BlsI	GCNGC	4 cut(s)	252, 289, 364, 559
Bme1390I	CCNGG	5 cut(s)	398, 403, 587, 822, 927
Bme18I	GGWCC	1 cut(s)	818
BmgT120I	GGNCC	2 cut(s)	9, 818
BmiI	GGNNCC	3 cut(s)	217, 262, 312
BmrFI	CCNGG	5 cut(s)	398, 403, 587, 822, 927
BmrI	ACTGGG	2 cut(s)	72, 632
BmsI	GCATC	2 cut(s)	496, 818
BmuI	ACTGGG	2 cut(s)	72, 632
BpiI	GAAGAC	1 cut(s)	912
BpmI	CTGGAG	1 cut(s)	166
Bpu10I	CCTNAGC	1 cut(s)	371
Bpu14I	TTCGAA	1 cut(s)	431
BpuEI	CTTGAG	2 cut(s)	510, 680
BpuMI	CCSGG	1 cut(s)	403
BsaAI	YACGTR	1 cut(s)	385
BsaHI	GRCGYC	2 cut(s)	216, 311
BsaJI	CCNNGG	2 cut(s)	211, 768
BsaWI	WCCGGW	1 cut(s)	621
BsaXI	ACNNNNNCTCC	2 cut(s)	687, 717
Bsc4I	CCNNNNNNNGG	2 cut(s)	333, 678
Bse118I	RCCGGY	2 cut(s)	283, 313
Bse1I	ACTGG	2 cut(s)	67, 638
BseBI	CCWGG	4 cut(s)	398, 587, 822, 927
BseDI	CCNNGG	2 cut(s)	211, 768
BseGI	GGATG	1 cut(s)	809
BseLI	CCNNNNNNNGG	2 cut(s)	333, 678
BseMII	CTCAG	1 cut(s)	385
BseNI	ACTGG	2 cut(s)	67, 638
BseRI	GAGGAG	2 cut(s)	312, 553
BseX3I	CGGCCG	1 cut(s)	408
BseYI	CCCAGC	1 cut(s)	900
Bsh1236I	CGCG	3 cut(s)	157, 281, 332
Bsh1285I	CGRYCG	2 cut(s)	411, 536
BshFI	GGCC	5 cut(s)	11, 362, 401, 410, 470
BshNI	GGYRCC	2 cut(s)	215, 310
BsiEI	CGRYCG	2 cut(s)	411, 536
BsiHKAI	GWGCWC	3 cut(s)	225, 450, 666
BsiSI	CCGG	5 cut(s)	258, 284, 314, 402, 622
BslFI	GGGAC	3 cut(s)	124, 418, 554
BslI	CCNNNNNNNGG	2 cut(s)	333, 678
BsmAI	GTCTC	1 cut(s)	239
BsmBI	CGTCTC	1 cut(s)	239
BsmFI	GGGAC	3 cut(s)	124, 418, 554
BsmI	GAATGC	3 cut(s)	515, 617, 658
BsnI	GGCC	5 cut(s)	11, 362, 401, 410, 470
Bsp119I	TTCGAA	1 cut(s)	431
Bsp1286I	GDGCHC	3 cut(s)	225, 450, 666
Bsp1407I	TGTACA	1 cut(s)	591
Bsp143I	GATC	2 cut(s)	457, 533
BspACI	CCGC	7 cut(s)	155, 208, 250, 287, 363, 557, 672
BspANI	GGCC	5 cut(s)	11, 362, 401, 410, 470
BspCNI	CTCAG	1 cut(s)	384
BspFNI	CGCG	3 cut(s)	157, 281, 332
BspLI	GGNNCC	3 cut(s)	217, 262, 312
BspPI	GGATC	1 cut(s)	452
BspQI	GCTCTTC	1 cut(s)	386
BspT104I	TTCGAA	1 cut(s)	431
BspT107I	GGYRCC	2 cut(s)	215, 310
BsrFI	RCCGGY	2 cut(s)	283, 313
BsrGI	TGTACA	1 cut(s)	591
BsrI	ACTGG	2 cut(s)	67, 638
BssAI	RCCGGY	2 cut(s)	283, 313
BssECI	CCNNGG	2 cut(s)	211, 768
BssMI	GATC	2 cut(s)	457, 533
BssNI	GRCGYC	2 cut(s)	216, 311
BssT1I	CCWWGG	1 cut(s)	768
Bst2UI	CCWGG	4 cut(s)	398, 587, 822, 927
Bst4CI	ACNGT	2 cut(s)	21, 421
Bst6I	CTCTTC	1 cut(s)	386
BstACI	GRCGYC	2 cut(s)	216, 311
BstAUI	TGTACA	1 cut(s)	591
BstBAI	YACGTR	1 cut(s)	385
BstBI	TTCGAA	1 cut(s)	431
BstC8I	GCNNGC	7 cut(s)	255, 271, 285, 292, 296, 302, 339
BstDEI	CTNAG	1 cut(s)	371
BstF5I	GGATG	1 cut(s)	809
BstFNI	CGCG	3 cut(s)	157, 281, 332
BstH2I	RGCGCY	2 cut(s)	219, 314
BstHHI	GCGC	6 cut(s)	102, 159, 218, 283, 300, 313
BstKTI	GATC	2 cut(s)	460, 536
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	2 cut(s)	457, 533
BstMCI	CGRYCG	2 cut(s)	411, 536
BstMWI	GCNNNNNNNGC	7 cut(s)	154, 287, 310, 338, 362, 407, 521
BstNI	CCWGG	4 cut(s)	398, 587, 822, 927
BstNSI	RCATGY	2 cut(s)	304, 598
BstSCI	CCNGG	5 cut(s)	396, 401, 585, 820, 925
BstUI	CGCG	3 cut(s)	157, 281, 332
BstV2I	GAAGAC	1 cut(s)	912
BstZI	CGGCCG	1 cut(s)	408
BsuI	GTATCC	1 cut(s)	811
BsuRI	GGCC	5 cut(s)	11, 362, 401, 410, 470
BtsCI	GGATG	1 cut(s)	809
BtsI	GCAGTG	1 cut(s)	199
BtsIMutI	CAGTG	2 cut(s)	123, 199
Cac8I	GCNNGC	7 cut(s)	255, 271, 285, 292, 296, 302, 339
CfoI	GCGC	6 cut(s)	102, 159, 218, 283, 300, 313
Cfr10I	RCCGGY	2 cut(s)	283, 313
Cfr13I	GGNCC	2 cut(s)	9, 818
CsiI	ACCWGGT	1 cut(s)	585
Csp6I	GTAC	1 cut(s)	592
CviAII	CATG	2 cut(s)	301, 595
CviQI	GTAC	1 cut(s)	592
DdeI	CTNAG	1 cut(s)	371
DinI	GGCGCC	2 cut(s)	217, 312
DpnI	GATC	2 cut(s)	459, 535
DpnII	GATC	2 cut(s)	457, 533
EaeI	YGGCCR	3 cut(s)	360, 399, 408
EagI	CGGCCG	1 cut(s)	408
Eam1104I	CTCTTC	1 cut(s)	386
EarI	CTCTTC	1 cut(s)	386
EciI	GGCGGA	1 cut(s)	197
Ecl136II	GAGCTC	2 cut(s)	223, 664
EclXI	CGGCCG	1 cut(s)	408
Eco130I	CCWWGG	1 cut(s)	768
Eco24I	GRGCYC	2 cut(s)	225, 666
Eco47I	GGWCC	1 cut(s)	818
Eco52I	CGGCCG	1 cut(s)	408
Eco53kI	GAGCTC	2 cut(s)	223, 664
Eco57I	CTGAAG	1 cut(s)	620
Eco72I	CACGTG	1 cut(s)	385
EcoICRI	GAGCTC	2 cut(s)	223, 664
EcoRI	GAATTC	1 cut(s)	892
EcoRII	CCWGG	4 cut(s)	396, 585, 820, 925
EcoT14I	CCWWGG	1 cut(s)	768
EcoT38I	GRGCYC	2 cut(s)	225, 666
EgeI	GGCGCC	2 cut(s)	217, 312
EheI	GGCGCC	2 cut(s)	217, 312
ErhI	CCWWGG	1 cut(s)	768
Esp3I	CGTCTC	1 cut(s)	239
FaeI	CATG	2 cut(s)	304, 598
FaqI	GGGAC	3 cut(s)	124, 418, 554
FatI	CATG	2 cut(s)	300, 594
FauI	CCCGC	1 cut(s)	162
Fnu4HI	GCNGC	4 cut(s)	251, 288, 363, 558
FokI	GGATG	1 cut(s)	796
FriOI	GRGCYC	2 cut(s)	225, 666
Fsp4HI	GCNGC	4 cut(s)	251, 288, 363, 558
GlaI	GCGC	6 cut(s)	101, 158, 217, 282, 299, 312
GluI	GCNGC	4 cut(s)	251, 288, 363, 558
GsaI	CCCAGC	1 cut(s)	904
GsuI	CTGGAG	1 cut(s)	166
HaeII	RGCGCY	2 cut(s)	219, 314
HaeIII	GGCC	5 cut(s)	11, 362, 401, 410, 470
HapII	CCGG	5 cut(s)	258, 284, 314, 402, 622
HhaI	GCGC	6 cut(s)	102, 159, 218, 283, 300, 313
Hin1I	GRCGYC	2 cut(s)	216, 311
Hin1II	CATG	2 cut(s)	304, 598
Hin6I	GCGC	6 cut(s)	100, 157, 216, 281, 298, 311
HinP1I	GCGC	6 cut(s)	100, 157, 216, 281, 298, 311
HinfI	GANTC	2 cut(s)	137, 878
HpaII	CCGG	5 cut(s)	258, 284, 314, 402, 622
HphI	GGTGA	1 cut(s)	757
Hpy166II	GTNNAC	1 cut(s)	592
Hpy188I	TCNGA	3 cut(s)	379, 457, 715
Hpy188III	TCNNGA	6 cut(s)	236, 571, 581, 804, 813, 953
Hpy8I	GTNNAC	1 cut(s)	592
HpyAV	CCTTC	4 cut(s)	337, 595, 602, 728
HpyCH4III	ACNGT	2 cut(s)	21, 421
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	4 cut(s)	70, 617, 656, 686
HpyF10VI	GCNNNNNNNGC	7 cut(s)	154, 287, 310, 338, 362, 407, 521
HpyF3I	CTNAG	1 cut(s)	371
HpySE526I	ACGT	1 cut(s)	384
Hsp92I	GRCGYC	2 cut(s)	216, 311
Hsp92II	CATG	2 cut(s)	304, 598
HspAI	GCGC	6 cut(s)	100, 157, 216, 281, 298, 311
KasI	GGCGCC	2 cut(s)	215, 310
KroI	GCCGGC	1 cut(s)	283
KroNI	GCCGGC	1 cut(s)	285
Kzo9I	GATC	2 cut(s)	457, 533
LguI	GCTCTTC	1 cut(s)	386
LweI	GCATC	2 cut(s)	496, 818
MabI	ACCWGGT	1 cut(s)	585
MaeII	ACGT	1 cut(s)	384
MaeIII	GTNAC	2 cut(s)	115, 746
MalI	GATC	2 cut(s)	459, 535
MboI	GATC	2 cut(s)	457, 533
MboII	GAAGA	8 cut(s)	251, 403, 515, 742, 745, 785, 869, 917
MhlI	GDGCHC	3 cut(s)	225, 450, 666
MluCI	AATT	7 cut(s)	48, 54, 427, 545, 612, 788, 892
Mly113I	GGCGCC	2 cut(s)	216, 311
MlyI	GAGTC	2 cut(s)	146, 887
MmeI	TCCRAC	1 cut(s)	738
MnlI	CCTC	9 cut(s)	177, 215, 221, 333, 380, 460, 530, 531, 809
MreI	CGCCGGCG	1 cut(s)	283
MroNI	GCCGGC	1 cut(s)	283
MslI	CAYNNNNRTG	1 cut(s)	504
MspA1I	CMGCKG	1 cut(s)	674
MspI	CCGG	5 cut(s)	258, 284, 314, 402, 622
MspR9I	CCNGG	5 cut(s)	398, 403, 587, 822, 927
Mva1269I	GAATGC	3 cut(s)	515, 617, 658
MvaI	CCWGG	4 cut(s)	398, 587, 822, 927
MvnI	CGCG	3 cut(s)	157, 281, 332
MwoI	GCNNNNNNNGC	7 cut(s)	154, 287, 310, 338, 362, 407, 521
NaeI	GCCGGC	1 cut(s)	285
NarI	GGCGCC	2 cut(s)	216, 311
NciI	CCSGG	1 cut(s)	403
NdeII	GATC	2 cut(s)	457, 533
NgoMIV	GCCGGC	1 cut(s)	283
NlaIII	CATG	2 cut(s)	304, 598
NlaIV	GGNNCC	3 cut(s)	217, 262, 312
NmeAIII	GCCGAG	2 cut(s)	192, 244
NmuCI	GTSAC	1 cut(s)	115
NspI	RCATGY	2 cut(s)	304, 598
NspV	TTCGAA	1 cut(s)	431
PaeI	GCATGC	1 cut(s)	304
PciSI	GCTCTTC	1 cut(s)	386
PcsI	WCGNNNNNNNCGW	1 cut(s)	507
PctI	GAATGC	3 cut(s)	515, 617, 658
PdiI	GCCGGC	1 cut(s)	285
PkrI	GCNGC	4 cut(s)	252, 289, 364, 559
Ple19I	CGATCG	1 cut(s)	536
PleI	GAGTC	2 cut(s)	145, 886
PluTI	GGCGCC	2 cut(s)	219, 314
PmaCI	CACGTG	1 cut(s)	385
PmlI	CACGTG	1 cut(s)	385
PpsI	GAGTC	2 cut(s)	145, 886
Ppu21I	YACGTR	1 cut(s)	385
Psp124BI	GAGCTC	2 cut(s)	225, 666
Psp6I	CCWGG	4 cut(s)	396, 585, 820, 925
PspCI	CACGTG	1 cut(s)	385
PspFI	CCCAGC	1 cut(s)	900
PspGI	CCWGG	4 cut(s)	396, 585, 820, 925
PspN4I	GGNNCC	3 cut(s)	217, 262, 312
PspPI	GGNCC	2 cut(s)	9, 818
PvuI	CGATCG	1 cut(s)	536
RsaI	GTAC	1 cut(s)	593
RsaNI	GTAC	1 cut(s)	592
RseI	CAYNNNNRTG	1 cut(s)	504
SacI	GAGCTC	2 cut(s)	225, 666
SapI	GCTCTTC	1 cut(s)	386
SatI	GCNGC	4 cut(s)	251, 288, 363, 558
Sau3AI	GATC	2 cut(s)	457, 533
Sau96I	GGNCC	2 cut(s)	9, 818
SchI	GAGTC	2 cut(s)	146, 887
ScrFI	CCNGG	5 cut(s)	398, 403, 587, 822, 927
SduI	GDGCHC	3 cut(s)	225, 450, 666
SexAI	ACCWGGT	1 cut(s)	585
SfaNI	GCATC	2 cut(s)	496, 818
SfiI	GGCCNNNNNGGCC	1 cut(s)	407
SfoI	GGCGCC	2 cut(s)	217, 312
SfuI	TTCGAA	1 cut(s)	431
SgrAI	CRCCGGYG	1 cut(s)	283
SinI	GGWCC	1 cut(s)	818
SmiMI	CAYNNNNRTG	1 cut(s)	504
SmlI	CTYRAG	2 cut(s)	525, 659
SmoI	CTYRAG	2 cut(s)	525, 659
SphI	GCATGC	1 cut(s)	304
Sse9I	AATT	7 cut(s)	48, 54, 427, 545, 612, 788, 892
SsiI	CCGC	7 cut(s)	155, 208, 250, 287, 363, 557, 672
SspDI	GGCGCC	2 cut(s)	215, 310
SstI	GAGCTC	2 cut(s)	225, 666
StyD4I	CCNGG	5 cut(s)	396, 401, 585, 820, 925
StyI	CCWWGG	1 cut(s)	768
TaaI	ACNGT	2 cut(s)	21, 421
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	5 cut(s)	84, 237, 431, 532, 536
TasI	AATT	7 cut(s)	48, 54, 427, 545, 612, 788, 892
TatI	WGTACW	1 cut(s)	591
TauI	GCSGC	4 cut(s)	253, 290, 365, 560
TscAI	CASTG	2 cut(s)	130, 206
TseFI	GTSAC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	3 cut(s)	178, 743, 907
TspRI	CASTG	2 cut(s)	130, 206
VpaK11BI	GGWCC	1 cut(s)	818
XapI	RAATTY	1 cut(s)	892
XceI	RCATGY	2 cut(s)	304, 598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.