Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0012495

Physical Location & Seq

Genomic Coordinates Reverse (-)

4840763 .. 4841988

Gene Structure 1226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g07850.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGGCTGGATTGTATTGGAAAACCATTCAGCTTTACTCGGCTCACGCACTGAGACGATGGAGTCCGCAAAGCCCTACCCGCGCTCAAACCCTCTGCTCTCGCTCTCCACCTTCATACACCAGCACTGCCTCCGCCTCGGCGCCGAGCTCTCCACCCGTTTCGAAGACACCAAGCGGCTCGCGGGAATCCTAGCCGGAAACTTCGCGCCGCTGGCGAGCAGGCGCATGTGTTCGGCTCCGGTTGCTCCGCCCTTCGCGTGGCTGGCTCAGAGCAATCACGCCCTGGCCGCTACCCTCAGCTCGGACCACGTGGCGAAGAGCCTGGCCGGCACGGCGGTGTATACGGTTAGCAATTCGAACAATGAGTTCGTGCTCATATCGATCCCAATGAGAGCAGGTCCATTGGATTGCTTTGCTTTCGGCAGGAAGACGCCGAAGCATTCCTCGCTCAAGTTCGATCGAGGAGAGAATTACGAAGTGCGGCTAAAGTTGTCCCGATTACTCTTGACCAGGTGTACATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tic22

Protein Analysis

175

Amino Acids

19.09

Weight (kDa)

9.62

Isoelectric Point (pI)

34.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33350 AT4G33350
fragaria_vesca	FvH4_2g34490
malus_domestica	MD08G1102400.v1.1 MD15G1083800.v1.1
prunus_persica	Prupe.1G436300_v2.0.a1
pyrus_communis	pycom08g08320 pycom15g07850 pycom15g07890
rosa_chinensis	RchiOBHm_Chr6g0307851
rosa_laevigata	RLG00000010693
rosa_multiflora	Rmu_sc0003252.1_g000014
rosa_roxburghii	Rroxscaffold_7G00160820
rosa_rugosa	Rorug06G0361400
rosa_samantha	Rh6AG470200 Rh6BG481200 Rh6CG486500 Rh6DG472700
rosa_wichuraiana	Rw6G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	61
Acc36I	ACCTGC	1 cut(s)	386
AccB1I	GGYRCC	1 cut(s)	140
AccI	GTMKAC	1 cut(s)	341
AccII	CGCG	4 cut(s)	82, 182, 206, 257
AclWI	GGATC	1 cut(s)	376
AcoI	YGGCCR	2 cut(s)	285, 324
AcvI	CACGTG	1 cut(s)	310
AcyI	GRCGYC	2 cut(s)	141, 431
AfaI	GTAC	1 cut(s)	517
AfiI	CCNNNNNNNGG	2 cut(s)	258, 301
AjnI	CCWGG	3 cut(s)	282, 321, 509
AleI	CACNNNNGTG	1 cut(s)	335
AluBI	AGCT	3 cut(s)	32, 148, 300
AluI	AGCT	3 cut(s)	32, 148, 300
Alw21I	GWGCWC	2 cut(s)	150, 375
Alw26I	GTCTC	1 cut(s)	47
AlwI	GGATC	1 cut(s)	376
AoxI	GGCC	2 cut(s)	285, 324
AspLEI	GCGC	4 cut(s)	84, 143, 208, 225
AspS9I	GGNCC	2 cut(s)	304, 398
AsuII	TTCGAA	2 cut(s)	162, 356
AvaII	GGWCC	2 cut(s)	304, 398
BanI	GGYRCC	1 cut(s)	140
BanII	GRGCYC	1 cut(s)	150
BbrPI	CACGTG	1 cut(s)	310
BbsI	GAAGAC	2 cut(s)	171, 434
Bbv12I	GWGCWC	2 cut(s)	150, 375
BbvCI	CCTCAGC	1 cut(s)	296
BccI	CCATC	1 cut(s)	52
BceAI	ACGGC	1 cut(s)	348
BciT130I	CCWGG	3 cut(s)	284, 323, 511
BcoDI	GTCTC	1 cut(s)	47
BfaI	CTAG	1 cut(s)	191
BfoI	RGCGCY	1 cut(s)	144
BfuAI	ACCTGC	1 cut(s)	386
BglI	GCCNNNNNGGC	2 cut(s)	327, 332
BisI	GCNGC	4 cut(s)	176, 209, 288, 482
BlsI	GCNGC	4 cut(s)	177, 210, 289, 483
Bme1390I	CCNGG	3 cut(s)	284, 323, 511
Bme18I	GGWCC	2 cut(s)	304, 398
BmgT120I	GGNCC	2 cut(s)	304, 398
BmiI	GGNNCC	2 cut(s)	142, 237
BmrFI	CCNGG	3 cut(s)	284, 323, 511
BpiI	GAAGAC	2 cut(s)	171, 434
Bpu10I	CCTNAGC	1 cut(s)	296
Bpu14I	TTCGAA	2 cut(s)	162, 356
BpuEI	CTTGAG	1 cut(s)	434
Bsa29I	ATCGAT	1 cut(s)	380
BsaAI	YACGTR	1 cut(s)	310
BsaHI	GRCGYC	2 cut(s)	141, 431
BsaJI	CCNNGG	2 cut(s)	136, 282
BsaWI	WCCGGW	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	2 cut(s)	258, 301
Bse118I	RCCGGY	1 cut(s)	326
BseBI	CCWGG	3 cut(s)	284, 323, 511
BseCI	ATCGAT	1 cut(s)	380
BseDI	CCNNGG	2 cut(s)	136, 282
BseLI	CCNNNNNNNGG	2 cut(s)	258, 301
BseMII	CTCAG	3 cut(s)	42, 281, 310
BseRI	GAGGAG	1 cut(s)	477
Bsh1236I	CGCG	4 cut(s)	82, 182, 206, 257
Bsh1285I	CGRYCG	1 cut(s)	460
BshFI	GGCC	2 cut(s)	287, 326
BshNI	GGYRCC	1 cut(s)	140
BshVI	ATCGAT	1 cut(s)	380
BsiEI	CGRYCG	1 cut(s)	460
BsiHKAI	GWGCWC	2 cut(s)	150, 375
BsiSI	CCGG	3 cut(s)	195, 239, 327
BslFI	GGGAC	1 cut(s)	478
BslI	CCNNNNNNNGG	2 cut(s)	258, 301
BsmAI	GTCTC	1 cut(s)	47
BsmBI	CGTCTC	1 cut(s)	47
BsmFI	GGGAC	1 cut(s)	478
BsmI	GAATGC	1 cut(s)	439
BsnI	GGCC	2 cut(s)	287, 326
Bsp119I	TTCGAA	2 cut(s)	162, 356
Bsp1286I	GDGCHC	2 cut(s)	150, 375
Bsp1407I	TGTACA	1 cut(s)	515
Bsp143I	GATC	2 cut(s)	381, 457
BspANI	GGCC	2 cut(s)	287, 326
BspCNI	CTCAG	3 cut(s)	43, 280, 309
BspDI	ATCGAT	1 cut(s)	380
BspFNI	CGCG	4 cut(s)	82, 182, 206, 257
BspLI	GGNNCC	2 cut(s)	142, 237
BspMI	ACCTGC	1 cut(s)	386
BspPI	GGATC	1 cut(s)	376
BspQI	GCTCTTC	1 cut(s)	311
BspT104I	TTCGAA	2 cut(s)	162, 356
BspT107I	GGYRCC	1 cut(s)	140
BsrFI	RCCGGY	1 cut(s)	326
BsrGI	TGTACA	1 cut(s)	515
BssAI	RCCGGY	1 cut(s)	326
BssECI	CCNNGG	2 cut(s)	136, 282
BssMI	GATC	2 cut(s)	381, 457
BssNAI	GTATAC	1 cut(s)	342
BssNI	GRCGYC	2 cut(s)	141, 431
Bst1107I	GTATAC	1 cut(s)	342
Bst2UI	CCWGG	3 cut(s)	284, 323, 511
Bst4CI	ACNGT	1 cut(s)	346
Bst6I	CTCTTC	1 cut(s)	311
BstACI	GRCGYC	2 cut(s)	141, 431
BstAUI	TGTACA	1 cut(s)	515
BstBAI	YACGTR	1 cut(s)	310
BstBI	TTCGAA	2 cut(s)	162, 356
BstC8I	GCNNGC	6 cut(s)	180, 213, 217, 221, 264, 328
BstDEI	CTNAG	3 cut(s)	51, 267, 296
BstFNI	CGCG	4 cut(s)	82, 182, 206, 257
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	4 cut(s)	84, 143, 208, 225
BstKTI	GATC	2 cut(s)	384, 460
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	2 cut(s)	381, 457
BstMCI	CGRYCG	1 cut(s)	460
BstMWI	GCNNNNNNNGC	8 cut(s)	79, 212, 242, 263, 287, 327, 332, 445
BstNI	CCWGG	3 cut(s)	284, 323, 511
BstNSI	RCATGY	2 cut(s)	229, 522
BstSCI	CCNGG	3 cut(s)	282, 321, 509
BstUI	CGCG	4 cut(s)	82, 182, 206, 257
BstV2I	GAAGAC	2 cut(s)	171, 434
BstZ17I	GTATAC	1 cut(s)	342
Bsu15I	ATCGAT	1 cut(s)	380
BsuRI	GGCC	2 cut(s)	287, 326
BsuTUI	ATCGAT	1 cut(s)	380
BtsI	GCAGTG	1 cut(s)	124
BtsIMutI	CAGTG	2 cut(s)	48, 124
BveI	ACCTGC	1 cut(s)	386
Cac8I	GCNNGC	6 cut(s)	180, 213, 217, 221, 264, 328
CfoI	GCGC	4 cut(s)	84, 143, 208, 225
Cfr10I	RCCGGY	1 cut(s)	326
Cfr13I	GGNCC	2 cut(s)	304, 398
ClaI	ATCGAT	1 cut(s)	380
CseI	GACGC	1 cut(s)	439
CsiI	ACCWGGT	1 cut(s)	509
Csp6I	GTAC	1 cut(s)	516
CviAII	CATG	2 cut(s)	226, 519
CviQI	GTAC	1 cut(s)	516
DdeI	CTNAG	3 cut(s)	51, 267, 296
DinI	GGCGCC	1 cut(s)	142
DpnI	GATC	2 cut(s)	383, 459
DpnII	GATC	2 cut(s)	381, 457
DrdI	GACNNNNNNGTC	1 cut(s)	61
DseDI	GACNNNNNNGTC	1 cut(s)	61
EaeI	YGGCCR	2 cut(s)	285, 324
Eam1104I	CTCTTC	1 cut(s)	311
EarI	CTCTTC	1 cut(s)	311
EciI	GGCGGA	2 cut(s)	122, 237
Ecl136II	GAGCTC	1 cut(s)	148
Eco24I	GRGCYC	1 cut(s)	150
Eco47I	GGWCC	2 cut(s)	304, 398
Eco53kI	GAGCTC	1 cut(s)	148
Eco72I	CACGTG	1 cut(s)	310
EcoICRI	GAGCTC	1 cut(s)	148
EcoRII	CCWGG	3 cut(s)	282, 321, 509
EcoT38I	GRGCYC	1 cut(s)	150
EgeI	GGCGCC	1 cut(s)	142
EheI	GGCGCC	1 cut(s)	142
Esp3I	CGTCTC	1 cut(s)	47
FaeI	CATG	2 cut(s)	229, 522
FaiI	YATR	5 cut(s)	116, 227, 342, 377, 520
FaqI	GGGAC	1 cut(s)	478
FatI	CATG	2 cut(s)	225, 518
FauI	CCCGC	2 cut(s)	87, 175
FblI	GTMKAC	1 cut(s)	341
Fnu4HI	GCNGC	4 cut(s)	176, 209, 288, 482
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	4 cut(s)	176, 209, 288, 482
FspBI	CTAG	1 cut(s)	191
GlaI	GCGC	4 cut(s)	83, 142, 207, 224
GluI	GCNGC	4 cut(s)	176, 209, 288, 482
HaeII	RGCGCY	1 cut(s)	144
HaeIII	GGCC	2 cut(s)	287, 326
HapII	CCGG	3 cut(s)	195, 239, 327
HgaI	GACGC	1 cut(s)	439
HhaI	GCGC	4 cut(s)	84, 143, 208, 225
Hin1I	GRCGYC	2 cut(s)	141, 431
Hin1II	CATG	2 cut(s)	229, 522
Hin6I	GCGC	4 cut(s)	82, 141, 206, 223
HinP1I	GCGC	4 cut(s)	82, 141, 206, 223
HinfI	GANTC	2 cut(s)	62, 186
HpaII	CCGG	3 cut(s)	195, 239, 327
Hpy166II	GTNNAC	2 cut(s)	342, 516
Hpy188I	TCNGA	2 cut(s)	270, 304
Hpy188III	TCNNGA	2 cut(s)	495, 505
Hpy8I	GTNNAC	2 cut(s)	342, 516
HpyAV	CCTTC	2 cut(s)	121, 262
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	1 cut(s)	309
HpyF10VI	GCNNNNNNNGC	8 cut(s)	79, 212, 242, 263, 287, 327, 332, 445
HpyF3I	CTNAG	3 cut(s)	51, 267, 296
HpySE526I	ACGT	1 cut(s)	309
Hsp92I	GRCGYC	2 cut(s)	141, 431
Hsp92II	CATG	2 cut(s)	229, 522
HspAI	GCGC	4 cut(s)	82, 141, 206, 223
KasI	GGCGCC	1 cut(s)	140
KroI	GCCGGC	1 cut(s)	326
KroNI	GCCGGC	1 cut(s)	328
Kzo9I	GATC	2 cut(s)	381, 457
LguI	GCTCTTC	1 cut(s)	311
LmnI	GCTCC	2 cut(s)	241, 250
MabI	ACCWGGT	1 cut(s)	509
MaeI	CTAG	1 cut(s)	191
MaeII	ACGT	1 cut(s)	309
MalI	GATC	2 cut(s)	383, 459
MboI	GATC	2 cut(s)	381, 457
MboII	GAAGA	3 cut(s)	176, 328, 439
MhlI	GDGCHC	2 cut(s)	150, 375
MluCI	AATT	2 cut(s)	352, 469
Mly113I	GGCGCC	1 cut(s)	141
MlyI	GAGTC	1 cut(s)	71
MnlI	CCTC	6 cut(s)	102, 140, 146, 305, 454, 455
MroNI	GCCGGC	1 cut(s)	326
MslI	CAYNNNNRTG	1 cut(s)	335
MspA1I	CMGCKG	1 cut(s)	211
MspI	CCGG	3 cut(s)	195, 239, 327
MspR9I	CCNGG	3 cut(s)	284, 323, 511
Mva1269I	GAATGC	1 cut(s)	439
MvaI	CCWGG	3 cut(s)	284, 323, 511
MvnI	CGCG	4 cut(s)	82, 182, 206, 257
MwoI	GCNNNNNNNGC	8 cut(s)	79, 212, 242, 263, 287, 327, 332, 445
NaeI	GCCGGC	1 cut(s)	328
NarI	GGCGCC	1 cut(s)	141
NdeII	GATC	2 cut(s)	381, 457
NgoMIV	GCCGGC	1 cut(s)	326
NlaIII	CATG	2 cut(s)	229, 522
NlaIV	GGNNCC	2 cut(s)	142, 237
NmeAIII	GCCGAG	3 cut(s)	18, 117, 169
NspI	RCATGY	2 cut(s)	229, 522
NspV	TTCGAA	2 cut(s)	162, 356
OliI	CACNNNNGTG	1 cut(s)	335
PciSI	GCTCTTC	1 cut(s)	311
PctI	GAATGC	1 cut(s)	439
PdiI	GCCGGC	1 cut(s)	328
PfeI	GAWTC	1 cut(s)	186
PkrI	GCNGC	4 cut(s)	177, 210, 289, 483
Ple19I	CGATCG	1 cut(s)	460
PleI	GAGTC	1 cut(s)	70
PluTI	GGCGCC	1 cut(s)	144
PmaCI	CACGTG	1 cut(s)	310
PmlI	CACGTG	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	70
Ppu21I	YACGTR	1 cut(s)	310
Psp124BI	GAGCTC	1 cut(s)	150
Psp6I	CCWGG	3 cut(s)	282, 321, 509
PspCI	CACGTG	1 cut(s)	310
PspGI	CCWGG	3 cut(s)	282, 321, 509
PspN4I	GGNNCC	2 cut(s)	142, 237
PspPI	GGNCC	2 cut(s)	304, 398
PvuI	CGATCG	1 cut(s)	460
RsaI	GTAC	1 cut(s)	517
RsaNI	GTAC	1 cut(s)	516
RseI	CAYNNNNRTG	1 cut(s)	335
SacI	GAGCTC	1 cut(s)	150
SapI	GCTCTTC	1 cut(s)	311
SatI	GCNGC	4 cut(s)	176, 209, 288, 482
Sau3AI	GATC	2 cut(s)	381, 457
Sau96I	GGNCC	2 cut(s)	304, 398
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	3 cut(s)	284, 323, 511
SduI	GDGCHC	2 cut(s)	150, 375
SetI	ASST	7 cut(s)	34, 113, 150, 302, 312, 400, 515
SexAI	ACCWGGT	1 cut(s)	509
SfoI	GGCGCC	1 cut(s)	142
SfuI	TTCGAA	2 cut(s)	162, 356
SinI	GGWCC	2 cut(s)	304, 398
SmiMI	CAYNNNNRTG	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
Sse9I	AATT	2 cut(s)	352, 469
SspDI	GGCGCC	1 cut(s)	140
SspMI	CTAG	1 cut(s)	191
SstI	GAGCTC	1 cut(s)	150
StyD4I	CCNGG	3 cut(s)	282, 321, 509
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	5 cut(s)	162, 356, 380, 456, 460
TasI	AATT	2 cut(s)	352, 469
TatI	WGTACW	1 cut(s)	515
TauI	GCSGC	4 cut(s)	178, 211, 290, 484
TfiI	GAWTC	1 cut(s)	186
TscAI	CASTG	2 cut(s)	55, 131
TspDTI	ATGAA	1 cut(s)	103
TspRI	CASTG	2 cut(s)	55, 131
VpaK11BI	GGWCC	2 cut(s)	304, 398
XceI	RCATGY	2 cut(s)	229, 522
XmiI	GTMKAC	1 cut(s)	341
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.