Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0012495

Physical Location & Seq

Genomic Coordinates Reverse (-)

3710142 .. 3713121

Gene Structure 2980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00160820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGAGTCCCCAAACCCCTTGGGCCCTCTGCTCTCCCTCTCCACCTTCATACGCCACCACTGCCTCCGCCTCGCCGCCGACCTCTCCAGCCGCCTCGAAGACACCAAACGCCTCGCCGGAAACTTCCTGCCGCCGGCGACCAGGCGCCTGCTTTCCGCCTCGGGCACTCCGCCGCCGCTGGCTTGGGTGGGCCAGCCGAACCACGCGTTGGCCGCCACCACCGCGACTCTGAGCTCCGACCACGTGGCGAAGAGCCTAGTCGGCACGGCGGTGTATACGGTTAGCAATGCGAACAATGAGTTCGTGCTTATCTCTGACCCCAGTGAAGCCAAGTCCATTGGCCTCCTTTGCTTCCGCAAAGAAGACGCCGAAGCCTTTCTCGCTCAGGTTCGGACTAGGACACGAGAGTTAAGAAGTCCGGCGAAGGTCGTCCCAATCACTCTTGACCAGCTCAAAGCTGCGGACAGGAGTGCATTTGATGGAGTTCCTGTTTTTCAGTCCGACCTTCTGGTTGTGAAGAAGAAAAACAAGCGTTACTGCCCAATATATTTTACTAAGGAAGATATAGAAAAGGAATTGTCAAAGGTTTCCAGATCATCCCGAGGACCAGGGGTTTCTCAAAATATTATGGTATTGGATAAGCTTCCATCAGTTGGTAGTCTGGAAGATGTTTTGAGAAAAATGGAGTCAAGTGAGAAGAATTCGGGCTGGGAAGATCTGATTTTTATTCCACCTGGCAAAAGCTACTCCCAACACATTCAAGATGTGGTTAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tic22

Protein Analysis

259

Amino Acids

28.42

Weight (kDa)

9.32

Isoelectric Point (pI)

54.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tic22	PF04278	10 - 151	1.2e-42	Tic22-like family
Tic22	PF04278	152 - 255	5.9e-41	Tic22-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33350 AT4G33350
fragaria_vesca	FvH4_2g34490
malus_domestica	MD08G1102400.v1.1 MD15G1083800.v1.1
prunus_persica	Prupe.1G436300_v2.0.a1
pyrus_communis	pycom08g08320 pycom15g07850 pycom15g07890
rosa_chinensis	RchiOBHm_Chr6g0307851
rosa_laevigata	RLG00000010693
rosa_multiflora	Rmu_sc0003252.1_g000014
rosa_roxburghii	Rroxscaffold_7G00160820
rosa_rugosa	Rorug06G0361400
rosa_samantha	Rh6AG470200 Rh6BG481200 Rh6CG486500 Rh6DG472700
rosa_wichuraiana	Rw6G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	144
AccB7I	CCANNNNNTGG	2 cut(s)	208, 653
AccI	GTMKAC	1 cut(s)	275
AccII	CGCG	2 cut(s)	206, 224
AcoI	YGGCCR	1 cut(s)	210
AcsI	RAATTY	1 cut(s)	700
AcvI	CACGTG	1 cut(s)	244
AcyI	GRCGYC	2 cut(s)	145, 366
AfiI	CCNNNNNNNGG	3 cut(s)	133, 208, 653
AflIII	ACRYGT	1 cut(s)	204
AgsI	TTSAA	1 cut(s)	761
AjnI	CCWGG	3 cut(s)	140, 607, 733
AjuI	GAANNNNNNNTTGG	2 cut(s)	191, 223
AleI	CACNNNNGTG	1 cut(s)	269
AluBI	AGCT	5 cut(s)	234, 451, 458, 643, 744
AluI	AGCT	5 cut(s)	234, 451, 458, 643, 744
Alw21I	GWGCWC	1 cut(s)	236
Ama87I	CYCGRG	2 cut(s)	160, 600
AoxI	GGCC	4 cut(s)	22, 190, 210, 340
ApaI	GGGCCC	1 cut(s)	26
ApeKI	GCWGC	1 cut(s)	458
ApoI	RAATTY	1 cut(s)	700
Asp700I	GAANNNNTTC	1 cut(s)	375
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	4 cut(s)	22, 23, 190, 605
AvaI	CYCGRG	2 cut(s)	160, 600
AvaII	GGWCC	1 cut(s)	605
BaeGI	GKGCMC	2 cut(s)	26, 167
BanI	GGYRCC	1 cut(s)	144
BanII	GRGCYC	2 cut(s)	26, 236
BauI	CACGAG	1 cut(s)	402
BbrPI	CACGTG	1 cut(s)	244
BbsI	GAAGAC	2 cut(s)	105, 369
Bbv12I	GWGCWC	1 cut(s)	236
BbvI	GCAGC	1 cut(s)	445
BccI	CCATC	2 cut(s)	473, 655
BceAI	ACGGC	1 cut(s)	282
BciT130I	CCWGG	3 cut(s)	142, 609, 735
BfaI	CTAG	2 cut(s)	257, 396
BfoI	RGCGCY	1 cut(s)	148
BglI	GCCNNNNNGGC	1 cut(s)	261
BglII	AGATCT	1 cut(s)	715
BisI	GCNGC	7 cut(s)	75, 91, 131, 173, 176, 213, 459
BlsI	GCNGC	7 cut(s)	76, 92, 132, 174, 177, 214, 460
Bme1390I	CCNGG	3 cut(s)	142, 609, 735
Bme18I	GGWCC	1 cut(s)	605
BmeT110I	CYCGRG	2 cut(s)	160, 600
BmgT120I	GGNCC	4 cut(s)	22, 23, 190, 605
BmiI	GGNNCC	2 cut(s)	24, 146
BmrFI	CCNGG	3 cut(s)	142, 609, 735
BmrI	ACTGGG	1 cut(s)	315
BmuI	ACTGGG	1 cut(s)	315
BpiI	GAAGAC	2 cut(s)	105, 369
BpmI	CTGGAG	1 cut(s)	70
Bpu10I	CCTNAGC	1 cut(s)	384
BsaAI	YACGTR	1 cut(s)	244
BsaHI	GRCGYC	2 cut(s)	145, 366
BsaJI	CCNNGG	4 cut(s)	18, 159, 601, 608
BsaXI	ACNNNNNCTCC	2 cut(s)	474, 504
Bsc4I	CCNNNNNNNGG	3 cut(s)	133, 208, 653
Bse118I	RCCGGY	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	321
Bse3DI	GCAATG	1 cut(s)	292
BseBI	CCWGG	3 cut(s)	142, 609, 735
BseDI	CCNNGG	4 cut(s)	18, 159, 601, 608
BseGI	GGATG	1 cut(s)	596
BseLI	CCNNNNNNNGG	3 cut(s)	133, 208, 653
BseMI	GCAATG	1 cut(s)	292
BseMII	CTCAG	2 cut(s)	221, 398
BseNI	ACTGG	1 cut(s)	321
BseSI	GKGCMC	2 cut(s)	26, 167
BseXI	GCAGC	1 cut(s)	445
BseYI	CCCAGC	1 cut(s)	708
Bsh1236I	CGCG	2 cut(s)	206, 224
BshFI	GGCC	4 cut(s)	24, 192, 212, 342
BshNI	GGYRCC	1 cut(s)	144
BsiHKAI	GWGCWC	1 cut(s)	236
BsiHKCI	CYCGRG	2 cut(s)	160, 600
BsiSI	CCGG	3 cut(s)	117, 134, 419
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	3 cut(s)	133, 208, 653
BsmFI	GGGAC	1 cut(s)	416
BsnI	GGCC	4 cut(s)	24, 192, 212, 342
BsoBI	CYCGRG	2 cut(s)	160, 600
Bsp120I	GGGCCC	1 cut(s)	22
Bsp1286I	GDGCHC	3 cut(s)	26, 167, 236
Bsp143I	GATC	2 cut(s)	593, 715
BspANI	GGCC	4 cut(s)	24, 192, 212, 342
BspCNI	CTCAG	2 cut(s)	222, 397
BspFNI	CGCG	2 cut(s)	206, 224
BspLI	GGNNCC	2 cut(s)	24, 146
BspQI	GCTCTTC	1 cut(s)	245
BspT107I	GGYRCC	1 cut(s)	144
BsrDI	GCAATG	1 cut(s)	292
BsrFI	RCCGGY	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	321
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	4 cut(s)	18, 159, 601, 608
BssMI	GATC	2 cut(s)	593, 715
BssNAI	GTATAC	1 cut(s)	276
BssNI	GRCGYC	2 cut(s)	145, 366
BssSI	CACGAG	1 cut(s)	402
BssT1I	CCWWGG	1 cut(s)	18
Bst1107I	GTATAC	1 cut(s)	276
Bst2BI	CACGAG	1 cut(s)	402
Bst2UI	CCWGG	3 cut(s)	142, 609, 735
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	1 cut(s)	245
BstACI	GRCGYC	2 cut(s)	145, 366
BstBAI	YACGTR	1 cut(s)	244
BstC8I	GCNNGC	4 cut(s)	135, 149, 180, 194
BstDEI	CTNAG	3 cut(s)	230, 384, 555
BstF5I	GGATG	1 cut(s)	596
BstFNI	CGCG	2 cut(s)	206, 224
BstH2I	RGCGCY	1 cut(s)	148
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	2 cut(s)	596, 718
BstMBI	GATC	2 cut(s)	593, 715
BstMWI	GCNNNNNNNGC	6 cut(s)	60, 212, 221, 261, 348, 380
BstNI	CCWGG	3 cut(s)	142, 609, 735
BstSCI	CCNGG	3 cut(s)	140, 607, 733
BstSLI	GKGCMC	2 cut(s)	26, 167
BstUI	CGCG	2 cut(s)	206, 224
BstV1I	GCAGC	1 cut(s)	445
BstV2I	GAAGAC	2 cut(s)	105, 369
BstX2I	RGATCY	1 cut(s)	715
BstYI	RGATCY	1 cut(s)	715
BstZ17I	GTATAC	1 cut(s)	276
BsuRI	GGCC	4 cut(s)	24, 192, 212, 342
BtsCI	GGATG	1 cut(s)	596
BtsI	GCAGTG	1 cut(s)	58
BtsIMutI	CAGTG	2 cut(s)	58, 328
Cac8I	GCNNGC	4 cut(s)	135, 149, 180, 194
CfoI	GCGC	1 cut(s)	147
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	4 cut(s)	22, 23, 190, 605
CseI	GACGC	1 cut(s)	374
DdeI	CTNAG	3 cut(s)	230, 384, 555
DinI	GGCGCC	1 cut(s)	146
DpnI	GATC	2 cut(s)	595, 717
DpnII	GATC	2 cut(s)	593, 715
EaeI	YGGCCR	1 cut(s)	210
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
EciI	GGCGGA	3 cut(s)	56, 145, 159
Ecl136II	GAGCTC	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	18
Eco24I	GRGCYC	2 cut(s)	26, 236
Eco47I	GGWCC	1 cut(s)	605
Eco53kI	GAGCTC	1 cut(s)	234
Eco72I	CACGTG	1 cut(s)	244
Eco88I	CYCGRG	2 cut(s)	160, 600
EcoICRI	GAGCTC	1 cut(s)	234
EcoO109I	RGGNCCY	1 cut(s)	23
EcoRI	GAATTC	1 cut(s)	700
EcoRII	CCWGG	3 cut(s)	140, 607, 733
EcoT14I	CCWWGG	1 cut(s)	18
EcoT38I	GRGCYC	2 cut(s)	26, 236
EgeI	GGCGCC	1 cut(s)	146
EheI	GGCGCC	1 cut(s)	146
ErhI	CCWWGG	1 cut(s)	18
FaiI	YATR	5 cut(s)	50, 276, 547, 566, 629
FaqI	GGGAC	1 cut(s)	416
FblI	GTMKAC	1 cut(s)	275
Fnu4HI	GCNGC	7 cut(s)	75, 91, 131, 173, 176, 213, 459
FokI	GGATG	1 cut(s)	583
FriOI	GRGCYC	2 cut(s)	26, 236
Fsp4HI	GCNGC	7 cut(s)	75, 91, 131, 173, 176, 213, 459
FspBI	CTAG	2 cut(s)	257, 396
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	7 cut(s)	75, 91, 131, 173, 176, 213, 459
GsaI	CCCAGC	1 cut(s)	712
GsuI	CTGGAG	1 cut(s)	70
HaeII	RGCGCY	1 cut(s)	148
HaeIII	GGCC	4 cut(s)	24, 192, 212, 342
HapII	CCGG	3 cut(s)	117, 134, 419
HgaI	GACGC	1 cut(s)	374
HhaI	GCGC	1 cut(s)	147
Hin1I	GRCGYC	2 cut(s)	145, 366
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HindIII	AAGCTT	1 cut(s)	641
HinfI	GANTC	3 cut(s)	5, 226, 686
HpaII	CCGG	3 cut(s)	117, 134, 419
Hpy166II	GTNNAC	1 cut(s)	276
Hpy188I	TCNGA	6 cut(s)	231, 238, 316, 393, 502, 720
Hpy188III	TCNNGA	5 cut(s)	443, 591, 600, 662, 761
Hpy8I	GTNNAC	1 cut(s)	276
HpyAV	CCTTC	3 cut(s)	55, 418, 515
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	1 cut(s)	473
HpyF10VI	GCNNNNNNNGC	6 cut(s)	60, 212, 221, 261, 348, 380
HpyF3I	CTNAG	3 cut(s)	230, 384, 555
HpySE526I	ACGT	1 cut(s)	243
Hsp92I	GRCGYC	2 cut(s)	145, 366
HspAI	GCGC	1 cut(s)	145
KasI	GGCGCC	1 cut(s)	144
KroI	GCCGGC	1 cut(s)	133
KroNI	GCCGGC	1 cut(s)	135
Kzo9I	GATC	2 cut(s)	593, 715
LguI	GCTCTTC	1 cut(s)	245
LmnI	GCTCC	1 cut(s)	239
Lsp1109I	GCAGC	1 cut(s)	445
MaeI	CTAG	2 cut(s)	257, 396
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	1 cut(s)	533
MalI	GATC	2 cut(s)	595, 717
MboI	GATC	2 cut(s)	593, 715
MboII	GAAGA	9 cut(s)	110, 262, 374, 529, 532, 572, 677, 709, 725
MflI	RGATCY	1 cut(s)	715
MhlI	GDGCHC	3 cut(s)	26, 167, 236
MluCI	AATT	2 cut(s)	575, 700
MluI	ACGCGT	1 cut(s)	204
Mly113I	GGCGCC	1 cut(s)	145
MlyI	GAGTC	3 cut(s)	14, 220, 695
MmeI	TCCRAC	2 cut(s)	261, 525
MreI	CGCCGGCG	1 cut(s)	133
MroNI	GCCGGC	1 cut(s)	133
MroXI	GAANNNNTTC	1 cut(s)	375
MseI	TTAA	2 cut(s)	410, 771
MslI	CAYNNNNRTG	1 cut(s)	269
MspA1I	CMGCKG	1 cut(s)	178
MspI	CCGG	3 cut(s)	117, 134, 419
MspR9I	CCNGG	3 cut(s)	142, 609, 735
MvaI	CCWGG	3 cut(s)	142, 609, 735
MvnI	CGCG	2 cut(s)	206, 224
MwoI	GCNNNNNNNGC	6 cut(s)	60, 212, 221, 261, 348, 380
NaeI	GCCGGC	1 cut(s)	135
NarI	GGCGCC	1 cut(s)	145
NdeII	GATC	2 cut(s)	593, 715
NgoMIV	GCCGGC	1 cut(s)	133
NlaIV	GGNNCC	2 cut(s)	24, 146
OliI	CACNNNNGTG	1 cut(s)	269
PciSI	GCTCTTC	1 cut(s)	245
PdiI	GCCGGC	1 cut(s)	135
PdmI	GAANNNNTTC	1 cut(s)	375
PflMI	CCANNNNNTGG	2 cut(s)	208, 653
PkrI	GCNGC	7 cut(s)	76, 92, 132, 174, 177, 214, 460
PleI	GAGTC	3 cut(s)	13, 220, 694
PluTI	GGCGCC	1 cut(s)	148
PmaCI	CACGTG	1 cut(s)	244
PmlI	CACGTG	1 cut(s)	244
PpsI	GAGTC	3 cut(s)	13, 220, 694
Ppu21I	YACGTR	1 cut(s)	244
Psp124BI	GAGCTC	1 cut(s)	236
Psp6I	CCWGG	3 cut(s)	140, 607, 733
PspCI	CACGTG	1 cut(s)	244
PspFI	CCCAGC	1 cut(s)	708
PspGI	CCWGG	3 cut(s)	140, 607, 733
PspN4I	GGNNCC	2 cut(s)	24, 146
PspOMI	GGGCCC	1 cut(s)	22
PspPI	GGNCC	4 cut(s)	22, 23, 190, 605
PsuI	RGATCY	1 cut(s)	715
RseI	CAYNNNNRTG	1 cut(s)	269
SacI	GAGCTC	1 cut(s)	236
SapI	GCTCTTC	1 cut(s)	245
SaqAI	TTAA	2 cut(s)	410, 771
SatI	GCNGC	7 cut(s)	75, 91, 131, 173, 176, 213, 459
Sau3AI	GATC	2 cut(s)	593, 715
Sau96I	GGNCC	4 cut(s)	22, 23, 190, 605
SchI	GAGTC	3 cut(s)	14, 220, 695
ScrFI	CCNGG	3 cut(s)	142, 609, 735
SduI	GDGCHC	3 cut(s)	26, 167, 236
SfoI	GGCGCC	1 cut(s)	146
SgrAI	CRCCGGYG	1 cut(s)	133
SinI	GGWCC	1 cut(s)	605
SmiMI	CAYNNNNRTG	1 cut(s)	269
Sse9I	AATT	2 cut(s)	575, 700
SspDI	GGCGCC	1 cut(s)	144
SspI	AATATT	1 cut(s)	625
SspMI	CTAG	2 cut(s)	257, 396
SstI	GAGCTC	1 cut(s)	236
StyD4I	CCNGG	3 cut(s)	140, 607, 733
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	1 cut(s)	96
TasI	AATT	2 cut(s)	575, 700
TauI	GCSGC	6 cut(s)	77, 93, 133, 175, 178, 215
Tru1I	TTAA	2 cut(s)	410, 771
Tru9I	TTAA	2 cut(s)	410, 771
TscAI	CASTG	2 cut(s)	65, 328
TseI	GCWGC	1 cut(s)	458
TspDTI	ATGAA	1 cut(s)	37
TspRI	CASTG	2 cut(s)	65, 328
Van91I	CCANNNNNTGG	2 cut(s)	208, 653
VpaK11BI	GGWCC	1 cut(s)	605
XapI	RAATTY	1 cut(s)	700
XmiI	GTMKAC	1 cut(s)	275
XmnI	GAANNNNTTC	1 cut(s)	375
XspI	CTAG	2 cut(s)	257, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.