pycom15g07890

Protein TIC 22, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0012495
Physical Location & Seq
Reverse (-)
4865183 .. 4865632
450 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g07890.1

Sequence Viewer

Length: 450 bp
ATGGAGTGCGCGAAGACCTACCCGCGCTCAAACCCTCTGCTCTCGCTCTCCACCTTCATACACCAGCACTGCCTCCGCCTCGGCGCCGAGCTCTCCACCCGTTTCGAAGACACCAAGCGGCTCGCGGGAATCCTAGCTGGAAACTTCGCGCCGCTGGCGAGCAGGCGCATGTGTTCGGCTCCGGTTGCTCCGCCCTTCGCGTGGCTGGCTCAGAGCAATCACGCCCTGGCCGCTACCCTCAGCTCGGACCACGTGGCGAAGAGCCTGGCCGGCACGGCGGTGTATACGGTTAGCAATTCGAACAATGAGTTCGTGCTGATCTCTGATCCCAAAGAGGCCAAGTCCATTGGATTGCTTTGCTTTCGGCAGGAAGACGCCGCAGCATTCCTCGCTCAAGTTAGCATTTTTAATTTTTTTTTGGAGGGAAAGATTAGTAGGATGAGTAATTAG

Protein Analysis

150

Amino Acids

16.18

Weight (kDa)

8.8

Isoelectric Point (pI)

43.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tic22 PF04278 13 - 134 9.2e-35 Tic22-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33350 AT4G33350
fragaria_vesca FvH4_2g34490
malus_domestica MD08G1102400.v1.1 MD15G1083800.v1.1
prunus_persica Prupe.1G436300_v2.0.a1
pyrus_communis pycom08g08320 pycom15g07850 pycom15g07890
rosa_chinensis RchiOBHm_Chr6g0307851
rosa_laevigata RLG00000010693
rosa_multiflora Rmu_sc0003252.1_g000014
rosa_roxburghii Rroxscaffold_7G00160820
rosa_rugosa Rorug06G0361400
rosa_samantha Rh6AG470200 Rh6BG481200 Rh6CG486500 Rh6DG472700
rosa_wichuraiana Rw6G041050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 83
AccI GTMKAC 1 cut(s) 284
AccII CGCG 5 cut(s) 11, 25, 125, 149, 200
AciI CCGC 9 cut(s) 23, 76, 118, 125, 152, 191, 231, 278, 378
AclWI GGATC 1 cut(s) 320
AcoI YGGCCR 2 cut(s) 228, 267
AcvI CACGTG 1 cut(s) 253
AcyI GRCGYC 2 cut(s) 84, 375
AfiI CCNNNNNNNGG 2 cut(s) 201, 244
AjnI CCWGG 2 cut(s) 225, 264
AleI CACNNNNGTG 1 cut(s) 278
AluBI AGCT 3 cut(s) 91, 137, 243
AluI AGCT 3 cut(s) 91, 137, 243
Alw21I GWGCWC 1 cut(s) 93
AlwI GGATC 1 cut(s) 320
AoxI GGCC 3 cut(s) 228, 267, 336
ApeKI GCWGC 1 cut(s) 380
AspLEI GCGC 5 cut(s) 11, 27, 86, 151, 168
AspS9I GGNCC 1 cut(s) 247
AsuII TTCGAA 2 cut(s) 105, 299
AvaII GGWCC 1 cut(s) 247
BanI GGYRCC 1 cut(s) 83
BanII GRGCYC 1 cut(s) 93
BbrPI CACGTG 1 cut(s) 253
BbsI GAAGAC 3 cut(s) 20, 114, 378
Bbv12I GWGCWC 1 cut(s) 93
BbvCI CCTCAGC 1 cut(s) 239
BbvI GCAGC 1 cut(s) 392
BceAI ACGGC 1 cut(s) 291
BciT130I CCWGG 2 cut(s) 227, 266
BfaI CTAG 1 cut(s) 134
BfoI RGCGCY 1 cut(s) 87
BglI GCCNNNNNGGC 2 cut(s) 270, 275
BisI GCNGC 5 cut(s) 119, 152, 231, 378, 381
BlsI GCNGC 5 cut(s) 120, 153, 232, 379, 382
Bme1390I CCNGG 2 cut(s) 227, 266
Bme18I GGWCC 1 cut(s) 247
BmgT120I GGNCC 1 cut(s) 247
BmiI GGNNCC 2 cut(s) 85, 180
BmrFI CCNGG 2 cut(s) 227, 266
BpiI GAAGAC 3 cut(s) 20, 114, 378
Bpu10I CCTNAGC 1 cut(s) 239
Bpu14I TTCGAA 2 cut(s) 105, 299
BpuEI CTTGAG 1 cut(s) 378
BsaAI YACGTR 1 cut(s) 253
BsaHI GRCGYC 2 cut(s) 84, 375
BsaJI CCNNGG 2 cut(s) 79, 225
BsaWI WCCGGW 1 cut(s) 181
Bsc4I CCNNNNNNNGG 2 cut(s) 201, 244
Bse118I RCCGGY 1 cut(s) 269
BseBI CCWGG 2 cut(s) 227, 266
BseDI CCNNGG 2 cut(s) 79, 225
BseGI GGATG 1 cut(s) 444
BseLI CCNNNNNNNGG 2 cut(s) 201, 244
BseMII CTCAG 2 cut(s) 224, 253
BseXI GCAGC 1 cut(s) 392
Bsh1236I CGCG 5 cut(s) 11, 25, 125, 149, 200
BshFI GGCC 3 cut(s) 230, 269, 338
BshNI GGYRCC 1 cut(s) 83
BsiHKAI GWGCWC 1 cut(s) 93
BsiSI CCGG 2 cut(s) 182, 270
BslI CCNNNNNNNGG 2 cut(s) 201, 244
BsmI GAATGC 1 cut(s) 383
BsnI GGCC 3 cut(s) 230, 269, 338
Bsp119I TTCGAA 2 cut(s) 105, 299
Bsp1286I GDGCHC 1 cut(s) 93
Bsp143I GATC 2 cut(s) 318, 325
BspACI CCGC 9 cut(s) 23, 76, 118, 125, 152, 191, 231, 278, 378
BspANI GGCC 3 cut(s) 230, 269, 338
BspCNI CTCAG 2 cut(s) 223, 252
BspFNI CGCG 5 cut(s) 11, 25, 125, 149, 200
BspLI GGNNCC 2 cut(s) 85, 180
BspPI GGATC 1 cut(s) 320
BspQI GCTCTTC 1 cut(s) 254
BspT104I TTCGAA 2 cut(s) 105, 299
BspT107I GGYRCC 1 cut(s) 83
BsrFI RCCGGY 1 cut(s) 269
BssAI RCCGGY 1 cut(s) 269
BssECI CCNNGG 2 cut(s) 79, 225
BssMI GATC 2 cut(s) 318, 325
BssNAI GTATAC 1 cut(s) 285
BssNI GRCGYC 2 cut(s) 84, 375
Bst1107I GTATAC 1 cut(s) 285
Bst2UI CCWGG 2 cut(s) 227, 266
Bst4CI ACNGT 1 cut(s) 289
Bst6I CTCTTC 1 cut(s) 254
BstACI GRCGYC 2 cut(s) 84, 375
BstBAI YACGTR 1 cut(s) 253
BstBI TTCGAA 2 cut(s) 105, 299
BstC8I GCNNGC 6 cut(s) 123, 156, 160, 164, 207, 271
BstDEI CTNAG 2 cut(s) 210, 239
BstF5I GGATG 1 cut(s) 444
BstFNI CGCG 5 cut(s) 11, 25, 125, 149, 200
BstH2I RGCGCY 1 cut(s) 87
BstHHI GCGC 5 cut(s) 11, 27, 86, 151, 168
BstKTI GATC 2 cut(s) 321, 328
BstMBI GATC 2 cut(s) 318, 325
BstMWI GCNNNNNNNGC 7 cut(s) 155, 185, 206, 230, 270, 275, 389
BstNI CCWGG 2 cut(s) 227, 266
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 2 cut(s) 225, 264
BstUI CGCG 5 cut(s) 11, 25, 125, 149, 200
BstV1I GCAGC 1 cut(s) 392
BstV2I GAAGAC 3 cut(s) 20, 114, 378
BstZ17I GTATAC 1 cut(s) 285
BsuRI GGCC 3 cut(s) 230, 269, 338
BtsCI GGATG 1 cut(s) 444
BtsI GCAGTG 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 67
Cac8I GCNNGC 6 cut(s) 123, 156, 160, 164, 207, 271
CfoI GCGC 5 cut(s) 11, 27, 86, 151, 168
Cfr10I RCCGGY 1 cut(s) 269
Cfr13I GGNCC 1 cut(s) 247
CseI GACGC 1 cut(s) 383
CviAII CATG 1 cut(s) 169
DdeI CTNAG 2 cut(s) 210, 239
DinI GGCGCC 1 cut(s) 85
DpnI GATC 2 cut(s) 320, 327
DpnII GATC 2 cut(s) 318, 325
EaeI YGGCCR 2 cut(s) 228, 267
Eam1104I CTCTTC 1 cut(s) 254
EarI CTCTTC 1 cut(s) 254
EciI GGCGGA 2 cut(s) 65, 180
Ecl136II GAGCTC 1 cut(s) 91
Eco24I GRGCYC 1 cut(s) 93
Eco47I GGWCC 1 cut(s) 247
Eco53kI GAGCTC 1 cut(s) 91
Eco72I CACGTG 1 cut(s) 253
EcoICRI GAGCTC 1 cut(s) 91
EcoRII CCWGG 2 cut(s) 225, 264
EcoT38I GRGCYC 1 cut(s) 93
EgeI GGCGCC 1 cut(s) 85
EheI GGCGCC 1 cut(s) 85
FaeI CATG 1 cut(s) 172
FaiI YATR 3 cut(s) 59, 170, 285
FatI CATG 1 cut(s) 168
FauI CCCGC 2 cut(s) 30, 118
FblI GTMKAC 1 cut(s) 284
Fnu4HI GCNGC 5 cut(s) 119, 152, 231, 378, 381
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 5 cut(s) 119, 152, 231, 378, 381
FspBI CTAG 1 cut(s) 134
GlaI GCGC 5 cut(s) 10, 26, 85, 150, 167
GluI GCNGC 5 cut(s) 119, 152, 231, 378, 381
HaeII RGCGCY 1 cut(s) 87
HaeIII GGCC 3 cut(s) 230, 269, 338
HapII CCGG 2 cut(s) 182, 270
HgaI GACGC 1 cut(s) 383
HhaI GCGC 5 cut(s) 11, 27, 86, 151, 168
Hin1I GRCGYC 2 cut(s) 84, 375
Hin1II CATG 1 cut(s) 172
Hin6I GCGC 5 cut(s) 9, 25, 84, 149, 166
HinP1I GCGC 5 cut(s) 9, 25, 84, 149, 166
HinfI GANTC 1 cut(s) 129
HpaII CCGG 2 cut(s) 182, 270
Hpy166II GTNNAC 1 cut(s) 285
Hpy188I TCNGA 3 cut(s) 213, 247, 325
Hpy8I GTNNAC 1 cut(s) 285
HpyAV CCTTC 2 cut(s) 64, 205
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4IV ACGT 1 cut(s) 252
HpyF10VI GCNNNNNNNGC 7 cut(s) 155, 185, 206, 230, 270, 275, 389
HpyF3I CTNAG 2 cut(s) 210, 239
HpySE526I ACGT 1 cut(s) 252
Hsp92I GRCGYC 2 cut(s) 84, 375
Hsp92II CATG 1 cut(s) 172
HspAI GCGC 5 cut(s) 9, 25, 84, 149, 166
KasI GGCGCC 1 cut(s) 83
KroI GCCGGC 1 cut(s) 269
KroNI GCCGGC 1 cut(s) 271
Kzo9I GATC 2 cut(s) 318, 325
LguI GCTCTTC 1 cut(s) 254
LmnI GCTCC 2 cut(s) 184, 193
Lsp1109I GCAGC 1 cut(s) 392
MaeI CTAG 1 cut(s) 134
MaeII ACGT 1 cut(s) 252
MalI GATC 2 cut(s) 320, 327
MboI GATC 2 cut(s) 318, 325
MboII GAAGA 4 cut(s) 25, 119, 271, 383
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 3 cut(s) 295, 409, 445
Mly113I GGCGCC 1 cut(s) 84
MnlI CCTC 7 cut(s) 45, 83, 89, 248, 328, 398, 415
MroNI GCCGGC 1 cut(s) 269
MseI TTAA 1 cut(s) 408
MslI CAYNNNNRTG 1 cut(s) 278
MspA1I CMGCKG 1 cut(s) 154
MspI CCGG 2 cut(s) 182, 270
MspR9I CCNGG 2 cut(s) 227, 266
Mva1269I GAATGC 1 cut(s) 383
MvaI CCWGG 2 cut(s) 227, 266
MvnI CGCG 5 cut(s) 11, 25, 125, 149, 200
MwoI GCNNNNNNNGC 7 cut(s) 155, 185, 206, 230, 270, 275, 389
NaeI GCCGGC 1 cut(s) 271
NarI GGCGCC 1 cut(s) 84
NdeII GATC 2 cut(s) 318, 325
NgoMIV GCCGGC 1 cut(s) 269
NlaIII CATG 1 cut(s) 172
NlaIV GGNNCC 2 cut(s) 85, 180
NmeAIII GCCGAG 2 cut(s) 60, 112
NspI RCATGY 1 cut(s) 172
NspV TTCGAA 2 cut(s) 105, 299
OliI CACNNNNGTG 1 cut(s) 278
PciSI GCTCTTC 1 cut(s) 254
PctI GAATGC 1 cut(s) 383
PdiI GCCGGC 1 cut(s) 271
PfeI GAWTC 1 cut(s) 129
PkrI GCNGC 5 cut(s) 120, 153, 232, 379, 382
PluTI GGCGCC 1 cut(s) 87
PmaCI CACGTG 1 cut(s) 253
PmlI CACGTG 1 cut(s) 253
Ppu21I YACGTR 1 cut(s) 253
Psp124BI GAGCTC 1 cut(s) 93
Psp6I CCWGG 2 cut(s) 225, 264
PspCI CACGTG 1 cut(s) 253
PspGI CCWGG 2 cut(s) 225, 264
PspN4I GGNNCC 2 cut(s) 85, 180
PspPI GGNCC 1 cut(s) 247
RseI CAYNNNNRTG 1 cut(s) 278
SacI GAGCTC 1 cut(s) 93
SapI GCTCTTC 1 cut(s) 254
SaqAI TTAA 1 cut(s) 408
SatI GCNGC 5 cut(s) 119, 152, 231, 378, 381
Sau3AI GATC 2 cut(s) 318, 325
Sau96I GGNCC 1 cut(s) 247
ScrFI CCNGG 2 cut(s) 227, 266
SduI GDGCHC 1 cut(s) 93
SetI ASST 6 cut(s) 20, 56, 93, 139, 245, 255
SfoI GGCGCC 1 cut(s) 85
SfuI TTCGAA 2 cut(s) 105, 299
SinI GGWCC 1 cut(s) 247
SmiMI CAYNNNNRTG 1 cut(s) 278
SmlI CTYRAG 1 cut(s) 393
SmoI CTYRAG 1 cut(s) 393
Sse9I AATT 3 cut(s) 295, 409, 445
SsiI CCGC 9 cut(s) 23, 76, 118, 125, 152, 191, 231, 278, 378
SspDI GGCGCC 1 cut(s) 83
SspMI CTAG 1 cut(s) 134
SstI GAGCTC 1 cut(s) 93
StyD4I CCNGG 2 cut(s) 225, 264
TaaI ACNGT 1 cut(s) 289
TaiI ACGT 1 cut(s) 255
TaqI TCGA 2 cut(s) 105, 299
TasI AATT 3 cut(s) 295, 409, 445
TauI GCSGC 4 cut(s) 121, 154, 233, 380
TfiI GAWTC 1 cut(s) 129
Tru1I TTAA 1 cut(s) 408
Tru9I TTAA 1 cut(s) 408
TscAI CASTG 1 cut(s) 74
TseI GCWGC 1 cut(s) 380
TspDTI ATGAA 1 cut(s) 46
TspRI CASTG 1 cut(s) 74
VpaK11BI GGWCC 1 cut(s) 247
XceI RCATGY 1 cut(s) 172
XmiI GTMKAC 1 cut(s) 284
XspI CTAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.