Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005253

Physical Location & Seq

Genomic Coordinates Reverse (-)

38796078 .. 38799009

Gene Structure 2932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G465000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGTTAGACAGAACAAAATGGAGGATGCCCATTTGAATCTATCGTGCATGCTCACTGTAGAATCAAAAGTAGAATCAAGGGATACTGGAAAGGCCACTGAATTGTTGGAGAGAGGACACATGGAGTATGGTTGTTCACACTACAGGCGAAGGTGCCGCATTAGAGCTCCTTGCTGCAATGAGATTTTTGATTGTCGCCATTGTCATAATGAAGCAAAGAACAATATCAATGTCGATCAGAAGCATAGGCATGACATACCACGTCATCAAGTCAAACAGGTGATATGTTCACTTTGTGGCACTGAGCAAGAGGTTGGACAAGTTTGTGTTAACTGTGGTGTATGCATGGGGAAATATTTCTGTGGAACTTGCAAGCTATTTGATGATGATACATCTAAGAGACAGTACCACTGCAATGGATGTGGAATTTGCAGAATTGGAGGGCGTGAGAATTTCTTCCACTGCTACAAGTGTGGCTGCTGCTACTCAATTATGTTAAAAAACAGCCACCCTTGTGTGGAGGGAGCAATGCATCACGACTGCCCTGTTTGCTTTGAGTTCTTATTTGAATCAACAAATGATGTTACGGTGATGCTGTGTGGACACACTATTCACAAGGATTGCTTAAAAGAGATGAGGGAGCATTATCAATATGCGTGCCCTCTTTGCTCCAAATCAGTTTGTGATATGTCCAAGGTATGGGAGAAATATGACATGGAGATTGCAGCTACACCAATGCCTGAACCATATAAAAACAAATTGGTCTGGATCCTCTGCAACGACTGCGGGAAAAGCTCACAAGTGCAGTACCATGTTGTGGCCCAGAAATGCCTGAACTGTAAATCCTACAACACTCGCCAAACGAGAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0002039 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

ko04115 ko04120 ko05162 map04115 map04120 map05162

Pfam Domains

Protein Families

zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

291

Amino Acids

33.44

Weight (kDa)

8.11

Isoelectric Point (pI)

44.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25560 AT5G25560 AT5G25560 AT5G25560 AT5G25560 AT5G25560
fragaria_vesca	FvH4_2g30250 FvH4_2g30250 FvH4_2g30250
malus_domestica	MD08G1135100.v1.1 MD15G1113900.v1.1
prunus_persica	Prupe.1G465000_v2.0.a1
pyrus_communis	pycom08g11400 pycom15g10220
rosa_chinensis	RchiOBHm_Chr6g0312621
rosa_laevigata	RLG00000010310
rosa_multiflora	Rmu_co8415537.1_g000003 Rmu_sc0002859.1_g000008 Rmu_ssc0000412.1_g000002
rosa_roxburghii	Rroxscaffold_7G00156640
rosa_rugosa	Rorug06G0397500 Rorug06G0397600 Rorug06G0397700 Rorug06G0397800
rosa_samantha	Rh6AG515000 Rh6BG525000 Rh6CG530400 Rh6DG517100
rosa_wichuraiana	Rw6G044740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	153
AccB7I	CCANNNNNTGG	2 cut(s)	699, 817
AciI	CCGC	2 cut(s)	157, 786
AclWI	GGATC	2 cut(s)	763, 776
AcsI	RAATTY	2 cut(s)	426, 451
AdeI	CACNNNGTG	1 cut(s)	296
AfaI	GTAC	2 cut(s)	407, 809
AfiI	CCNNNNNNNGG	3 cut(s)	517, 699, 817
AgsI	TTSAA	2 cut(s)	37, 569
AjiI	CACGTC	1 cut(s)	263
AleI	CACNNNNGTG	1 cut(s)	513
AloI	GAACNNNNNNTCC	2 cut(s)	827, 859
AluBI	AGCT	4 cut(s)	167, 376, 728, 795
AluI	AGCT	4 cut(s)	167, 376, 728, 795
Alw21I	GWGCWC	1 cut(s)	169
Alw26I	GTCTC	1 cut(s)	394
AlwI	GGATC	2 cut(s)	763, 776
AoxI	GGCC	2 cut(s)	93, 819
ApeKI	GCWGC	4 cut(s)	174, 477, 480, 725
ApoI	RAATTY	2 cut(s)	426, 451
Asp700I	GAANNNNTTC	2 cut(s)	356, 455
AspS9I	GGNCC	1 cut(s)	820
AsuHPI	GGTGA	2 cut(s)	292, 601
BaeGI	GKGCMC	1 cut(s)	662
BamHI	GGATCC	1 cut(s)	768
BanI	GGYRCC	1 cut(s)	153
BanII	GRGCYC	1 cut(s)	169
Bbv12I	GWGCWC	1 cut(s)	169
BbvI	GCAGC	4 cut(s)	161, 464, 467, 737
BciVI	GTATCC	1 cut(s)	76
BcoDI	GTCTC	1 cut(s)	394
BfmI	CTRYAG	2 cut(s)	57, 142
BfuI	GTATCC	1 cut(s)	76
BisI	GCNGC	5 cut(s)	157, 175, 478, 481, 726
BlsI	GCNGC	5 cut(s)	158, 176, 479, 482, 727
BmgBI	CACGTC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	820
BmiI	GGNNCC	2 cut(s)	155, 770
BmsI	GCATC	3 cut(s)	16, 541, 582
BsaJI	CCNNGG	1 cut(s)	693
Bsc4I	CCNNNNNNNGG	3 cut(s)	517, 699, 817
Bse1I	ACTGG	1 cut(s)	91
Bse3DI	GCAATG	3 cut(s)	184, 421, 534
BseDI	CCNNGG	1 cut(s)	693
BseGI	GGATG	2 cut(s)	31, 425
BseLI	CCNNNNNNNGG	3 cut(s)	517, 699, 817
BseMI	GCAATG	3 cut(s)	184, 421, 534
BseMII	CTCAG	1 cut(s)	294
BseNI	ACTGG	1 cut(s)	91
BseSI	GKGCMC	1 cut(s)	662
BseXI	GCAGC	4 cut(s)	161, 464, 467, 737
BsgI	GTGCAG	1 cut(s)	824
BshFI	GGCC	2 cut(s)	95, 821
BshNI	GGYRCC	1 cut(s)	153
BsiHKAI	GWGCWC	1 cut(s)	169
BslI	CCNNNNNNNGG	3 cut(s)	517, 699, 817
BsmAI	GTCTC	1 cut(s)	394
BsnI	GGCC	2 cut(s)	95, 821
Bsp1286I	GDGCHC	2 cut(s)	169, 662
Bsp143I	GATC	2 cut(s)	235, 768
BspACI	CCGC	2 cut(s)	157, 786
BspANI	GGCC	2 cut(s)	95, 821
BspCNI	CTCAG	1 cut(s)	295
BspLI	GGNNCC	2 cut(s)	155, 770
BspPI	GGATC	2 cut(s)	763, 776
BspT107I	GGYRCC	1 cut(s)	153
BsrDI	GCAATG	3 cut(s)	184, 421, 534
BsrI	ACTGG	1 cut(s)	91
BssECI	CCNNGG	1 cut(s)	693
BssMI	GATC	2 cut(s)	235, 768
BssT1I	CCWWGG	1 cut(s)	693
Bst4CI	ACNGT	5 cut(s)	58, 335, 405, 589, 839
BstAPI	GCANNNNNTGC	1 cut(s)	783
BstC8I	GCNNGC	3 cut(s)	50, 374, 658
BstDEI	CTNAG	2 cut(s)	303, 396
BstF5I	GGATG	2 cut(s)	31, 425
BstKTI	GATC	2 cut(s)	238, 771
BstMAI	GTCTC	1 cut(s)	394
BstMBI	GATC	2 cut(s)	235, 768
BstMWI	GCNNNNNNNGC	4 cut(s)	549, 666, 783, 792
BstNSI	RCATGY	1 cut(s)	52
BstSFI	CTRYAG	2 cut(s)	57, 142
BstSLI	GKGCMC	1 cut(s)	662
BstV1I	GCAGC	4 cut(s)	161, 464, 467, 737
BstX2I	RGATCY	1 cut(s)	768
BstXI	CCANNNNNNTGG	1 cut(s)	416
BstYI	RGATCY	1 cut(s)	768
BsuI	GTATCC	1 cut(s)	76
BsuRI	GGCC	2 cut(s)	95, 821
BtrI	CACGTC	1 cut(s)	263
BtsCI	GGATG	2 cut(s)	31, 425
BtsI	GCAGTG	2 cut(s)	409, 460
BtsIMutI	CAGTG	5 cut(s)	54, 96, 300, 409, 460
Cac8I	GCNNGC	3 cut(s)	50, 374, 658
Cfr13I	GGNCC	1 cut(s)	820
Csp6I	GTAC	2 cut(s)	406, 808
CspCI	CAANNNNNGTGG	2 cut(s)	403, 438
CviAII	CATG	6 cut(s)	49, 121, 251, 346, 715, 812
CviJI	RGCY	9 cut(s)	95, 167, 376, 477, 507, 728, 795, 821, 870
CviKI_1	RGCY	9 cut(s)	95, 167, 376, 477, 507, 728, 795, 821, 870
CviQI	GTAC	2 cut(s)	406, 808
DdeI	CTNAG	2 cut(s)	303, 396
DpnI	GATC	2 cut(s)	237, 770
DpnII	GATC	2 cut(s)	235, 768
DraIII	CACNNNGTG	1 cut(s)	296
Ecl136II	GAGCTC	1 cut(s)	167
Eco130I	CCWWGG	1 cut(s)	693
Eco24I	GRGCYC	1 cut(s)	169
Eco53kI	GAGCTC	1 cut(s)	167
EcoICRI	GAGCTC	1 cut(s)	167
EcoT14I	CCWWGG	1 cut(s)	693
EcoT22I	ATGCAT	2 cut(s)	347, 534
EcoT38I	GRGCYC	1 cut(s)	169
ErhI	CCWWGG	1 cut(s)	693
FaeI	CATG	6 cut(s)	52, 124, 254, 349, 718, 815
FalI	AAGNNNNNCTT	2 cut(s)	608, 640
FatI	CATG	6 cut(s)	48, 120, 250, 345, 714, 811
FauI	CCCGC	1 cut(s)	779
Fnu4HI	GCNGC	5 cut(s)	157, 175, 478, 481, 726
FokI	GGATG	2 cut(s)	38, 432
FriOI	GRGCYC	1 cut(s)	169
Fsp4HI	GCNGC	5 cut(s)	157, 175, 478, 481, 726
GluI	GCNGC	5 cut(s)	157, 175, 478, 481, 726
HaeIII	GGCC	2 cut(s)	95, 821
Hin1II	CATG	6 cut(s)	52, 124, 254, 349, 718, 815
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HinfI	GANTC	4 cut(s)	37, 62, 74, 569
HpaI	GTTAAC	1 cut(s)	331
HphI	GGTGA	2 cut(s)	292, 601
Hpy166II	GTNNAC	4 cut(s)	137, 290, 331, 602
Hpy188I	TCNGA	1 cut(s)	240
Hpy188III	TCNNGA	2 cut(s)	536, 766
Hpy8I	GTNNAC	4 cut(s)	137, 290, 331, 602
HpyAV	CCTTC	1 cut(s)	144
HpyCH4III	ACNGT	5 cut(s)	58, 335, 405, 589, 839
HpyCH4IV	ACGT	1 cut(s)	262
HpyF10VI	GCNNNNNNNGC	4 cut(s)	549, 666, 783, 792
HpyF3I	CTNAG	2 cut(s)	303, 396
HpySE526I	ACGT	1 cut(s)	262
Hsp92II	CATG	6 cut(s)	52, 124, 254, 349, 718, 815
KspAI	GTTAAC	1 cut(s)	331
Kzo9I	GATC	2 cut(s)	235, 768
LmnI	GCTCC	4 cut(s)	172, 524, 640, 674
LpnPI	CCDG	8 cut(s)	72, 130, 263, 558, 751, 753, 836, 845
Lsp1109I	GCAGC	4 cut(s)	161, 464, 467, 737
LweI	GCATC	3 cut(s)	16, 541, 582
MaeII	ACGT	1 cut(s)	262
MaeIII	GTNAC	1 cut(s)	583
MalI	GATC	2 cut(s)	237, 770
MboI	GATC	2 cut(s)	235, 768
MboII	GAAGA	1 cut(s)	448
MflI	RGATCY	1 cut(s)	768
MhlI	GDGCHC	2 cut(s)	169, 662
MluCI	AATT	6 cut(s)	101, 426, 435, 451, 489, 758
MmeI	TCCRAC	2 cut(s)	87, 295
MnlI	CCTC	9 cut(s)	16, 107, 304, 434, 514, 630, 672, 782, 860
Mph1103I	ATGCAT	2 cut(s)	347, 534
MroXI	GAANNNNTTC	2 cut(s)	356, 455
MseI	TTAA	3 cut(s)	330, 497, 626
MslI	CAYNNNNRTG	3 cut(s)	249, 414, 513
MwoI	GCNNNNNNNGC	4 cut(s)	549, 666, 783, 792
NdeII	GATC	2 cut(s)	235, 768
NlaIII	CATG	6 cut(s)	52, 124, 254, 349, 718, 815
NlaIV	GGNNCC	2 cut(s)	155, 770
NsiI	ATGCAT	2 cut(s)	347, 534
NspI	RCATGY	1 cut(s)	52
OliI	CACNNNNGTG	1 cut(s)	513
PaeI	GCATGC	1 cut(s)	52
PdmI	GAANNNNTTC	2 cut(s)	356, 455
PfeI	GAWTC	4 cut(s)	37, 62, 74, 569
PflMI	CCANNNNNTGG	2 cut(s)	699, 817
PkrI	GCNGC	5 cut(s)	158, 176, 479, 482, 727
Psp124BI	GAGCTC	1 cut(s)	169
PspN4I	GGNNCC	2 cut(s)	155, 770
PspPI	GGNCC	1 cut(s)	820
PsuI	RGATCY	1 cut(s)	768
RsaI	GTAC	2 cut(s)	407, 809
RsaNI	GTAC	2 cut(s)	406, 808
RseI	CAYNNNNRTG	3 cut(s)	249, 414, 513
SacI	GAGCTC	1 cut(s)	169
SaqAI	TTAA	3 cut(s)	330, 497, 626
SatI	GCNGC	5 cut(s)	157, 175, 478, 481, 726
Sau3AI	GATC	2 cut(s)	235, 768
Sau96I	GGNCC	1 cut(s)	820
SduI	GDGCHC	2 cut(s)	169, 662
SetI	ASST	9 cut(s)	155, 169, 265, 282, 315, 378, 699, 730, 797
SfaNI	GCATC	3 cut(s)	16, 541, 582
SfcI	CTRYAG	2 cut(s)	57, 142
SmiMI	CAYNNNNRTG	3 cut(s)	249, 414, 513
SphI	GCATGC	1 cut(s)	52
Sse9I	AATT	6 cut(s)	101, 426, 435, 451, 489, 758
SsiI	CCGC	2 cut(s)	157, 786
SspI	AATATT	1 cut(s)	356
SstI	GAGCTC	1 cut(s)	169
StyI	CCWWGG	1 cut(s)	693
TaaI	ACNGT	5 cut(s)	58, 335, 405, 589, 839
TaiI	ACGT	1 cut(s)	265
TaqI	TCGA	1 cut(s)	234
TasI	AATT	6 cut(s)	101, 426, 435, 451, 489, 758
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	4 cut(s)	37, 62, 74, 569
Tru1I	TTAA	3 cut(s)	330, 497, 626
Tru9I	TTAA	3 cut(s)	330, 497, 626
TscAI	CASTG	5 cut(s)	61, 103, 307, 416, 467
TseI	GCWGC	4 cut(s)	174, 477, 480, 725
TspDTI	ATGAA	1 cut(s)	225
TspRI	CASTG	5 cut(s)	61, 103, 307, 416, 467
Van91I	CCANNNNNTGG	2 cut(s)	699, 817
XapI	RAATTY	2 cut(s)	426, 451
XceI	RCATGY	1 cut(s)	52
XcmI	CCANNNNNNNNNTGG	1 cut(s)	103
XmnI	GAANNNNTTC	2 cut(s)	356, 455
Zsp2I	ATGCAT	2 cut(s)	347, 534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.