RLG00000010310

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0005253
Physical Location & Seq
Forward (+)
491257 .. 494231
2975 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010310

Sequence Viewer

Length: 1404 bp
ATGTCTTCCCCTGTGCTGTTGTCACCCATATCTCTTGAAAACCTCATTGAACTTACCATATCTGAAAATCTTGTTAGGGAAACAGTATACTTTGGGTTGTCTCAGCTGCAGCCTTATGCAAAACTGTTCTCTAGGTTCCATCCATATTTGTTTCCTTGTGTTTCGAATTCAGATGTAGTAGAGAACGAATGCTTTTATCAGAACACATTTGATCGTGTGATATATTTCTTTTACCATAGGTTGGGGCTTCTGTTCGTTGTGCCCAGTATAGTTGGATTTGGTTCCAGGGATGGAAGCTCTGGAGATCCTGAATGCTGCATTGTAGTTATTGTTTGGGTTCTTATAGAACTATTTGTTTTGATGAATCTTCCTCTCGGAGAAATGCTGATTGGAGCTGTTCAACCTTGGTTGGATTTTGTTGTTGCTGATTGCAATAGTCTTCAGCAGTGTAGAAGCAAGCAGAGTGTCATGGGGTGCTTTAGCCTTGTTGCCAGCTTATACACACTGTCCTACCTTTGGAGAAAGCAACATACAATGCTTACACAGAGAGTGATGGAGGAGTTCCACTATCATCTATCAAATGGGAAGTGCATGCTCACAATAGAAGCAAAGGACAATGAAAAGTCCATTGAATCTCTAGATAGAGGACTCACAGAGTATGGTTGTCCGCATTATCGGCGAAGGTGCCGCATTAGGGCTCCTTGTTGCAATGAGATTTTTGATTGTCGCCATTGTCATAATGAAGCAAAGAACAATATTAATGTTGACCCAAAACTCAGACATGACATACCACGGCATCATGTCGAACAGGTGATATGTTCACTTTGTGGCACTGAGCAAGAGGTTCAACAAGTCTGTGTCAACTGTGGTGTATGTATGGGCAAATACTTCTGTGAGACATGCAAGCTATTTGATGATGATATATCGAAGAAACAGTACCATTGTGATGGCTGTGGGATATGCAGAATTGGGGGGCGTGATAATTTCTTTCATTGCTACAAATGTGGCTGCTGCTACTCAATTCTGCTGAAAAACAGTCACCCTTGTGTGGAAGGAGCAATGCATCATGACTGCCCTGTTTGCTTCGAGTTCTTATTCGACTCAAGAAATGATGTTACAGTGATGCCATGTGGACACACTATTCACAAGCATTGCTTGAAAGAGATGAGAGACCATTTGCAATTTGCTTGCCCTCTTTGCTCCAAGTCAGTTTGTGATATGTCCAAGGTATGGGAGAAATATGATATGGAGATCGCAGCTACACCAATGCCCGAACCATATCAAAATAAACAAGTTTCAATTCTGTGCAACGACTGTGGGAAGAGCTCACAAGTGCAGTTTCACATTGTGGCGCAGAAATGCTCAAATTGCAAATCTTACAATACTCGCCAAACAAGAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0002039 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

468

Amino Acids

53.59

Weight (kDa)

6.58

Isoelectric Point (pI)

53.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CHY PF05495 222 - 296 6.6e-17 CHY zinc finger
zf-RING_2 PF13639 357 - 400 7.7e-08 Ring finger domain
zf-RING_5 PF14634 357 - 402 1.8e-06 zinc-RING finger domain
zf-RING_UBOX PF13445 358 - 398 2.9e-06 RING-type zinc-finger
zinc_ribbon_6 PF14599 405 - 463 6.9e-26 Zinc-ribbon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 684
AccB7I CCANNNNNTGG 2 cut(s) 241, 1230
AccI GTMKAC 1 cut(s) 87
AciI CCGC 2 cut(s) 668, 688
AclWI GGATC 1 cut(s) 299
AcsI RAATTY 1 cut(s) 166
AcuI CTGAAG 1 cut(s) 425
AdeI CACNNNGTG 2 cut(s) 827, 1348
AfaI GTAC 1 cut(s) 938
AfiI CCNNNNNNNGG 5 cut(s) 241, 516, 694, 1048, 1230
AgsI TTSAA 7 cut(s) 38, 50, 401, 632, 848, 1159, 1299
AjnI CCWGG 1 cut(s) 284
AjuI GAANNNNNNNTTGG 2 cut(s) 372, 404
AleI CACNNNNGTG 1 cut(s) 1044
AluBI AGCT 7 cut(s) 106, 297, 395, 495, 907, 1259, 1326
AluI AGCT 7 cut(s) 106, 297, 395, 495, 907, 1259, 1326
Alw21I GWGCWC 1 cut(s) 1328
Alw26I GTCTC 3 cut(s) 105, 890, 1164
AlwI GGATC 1 cut(s) 299
ApeKI GCWGC 6 cut(s) 106, 109, 315, 1008, 1011, 1256
ApoI RAATTY 1 cut(s) 166
AseI ATTAAT 1 cut(s) 759
AspLEI GCGC 1 cut(s) 1354
AsuHPI GGTGA 3 cut(s) 15, 823, 1031
AsuII TTCGAA 1 cut(s) 164
BaeGI GKGCMC 1 cut(s) 264
BanI GGYRCC 1 cut(s) 684
BanII GRGCYC 2 cut(s) 700, 1328
BarI GAAGNNNNNNTAC 2 cut(s) 920, 952
BbsI GAAGAC 1 cut(s) 431
Bbv12I GWGCWC 1 cut(s) 1328
BbvI GCAGC 6 cut(s) 93, 121, 302, 995, 998, 1268
BccI CCATC 4 cut(s) 147, 284, 547, 941
BceAI ACGGC 1 cut(s) 809
BciT130I CCWGG 1 cut(s) 286
BcoDI GTCTC 3 cut(s) 105, 890, 1164
BfaI CTAG 2 cut(s) 132, 638
BfmI CTRYAG 1 cut(s) 107
BisI GCNGC 7 cut(s) 107, 110, 316, 688, 1009, 1012, 1257
BlsI GCNGC 7 cut(s) 108, 111, 317, 689, 1010, 1013, 1258
Bme1390I CCNGG 1 cut(s) 286
BmiI GGNNCC 4 cut(s) 137, 283, 686, 699
BmrFI CCNGG 1 cut(s) 286
BmrI ACTGGG 1 cut(s) 258
BmsI GCATC 3 cut(s) 805, 1072, 1113
BmuI ACTGGG 1 cut(s) 258
BpiI GAAGAC 1 cut(s) 431
BpmI CTGGAG 1 cut(s) 321
Bpu14I TTCGAA 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 1087
BsaI GGTCTC 1 cut(s) 1164
BsaJI CCNNGG 4 cut(s) 285, 404, 791, 1224
Bsc4I CCNNNNNNNGG 5 cut(s) 241, 516, 694, 1048, 1230
Bse1I ACTGG 1 cut(s) 264
Bse3DI GCAATG 4 cut(s) 715, 991, 1065, 1150
BseBI CCWGG 1 cut(s) 286
BseDI CCNNGG 4 cut(s) 285, 404, 791, 1224
BseGI GGATG 2 cut(s) 139, 295
BseLI CCNNNNNNNGG 5 cut(s) 241, 516, 694, 1048, 1230
BseMI GCAATG 4 cut(s) 715, 991, 1065, 1150
BseMII CTCAG 3 cut(s) 116, 790, 825
BseNI ACTGG 1 cut(s) 264
BseRI GAGGAG 1 cut(s) 572
BseSI GKGCMC 1 cut(s) 264
BseXI GCAGC 6 cut(s) 93, 121, 302, 995, 998, 1268
BsgI GTGCAG 1 cut(s) 1355
BshNI GGYRCC 1 cut(s) 684
BsiHKAI GWGCWC 1 cut(s) 1328
BslI CCNNNNNNNGG 5 cut(s) 241, 516, 694, 1048, 1230
BsmAI GTCTC 3 cut(s) 105, 890, 1164
BsmI GAATGC 2 cut(s) 194, 317
Bso31I GGTCTC 1 cut(s) 1164
Bsp119I TTCGAA 1 cut(s) 164
Bsp1286I GDGCHC 3 cut(s) 264, 700, 1328
Bsp143I GATC 3 cut(s) 211, 304, 1251
BspACI CCGC 2 cut(s) 668, 688
BspCNI CTCAG 3 cut(s) 115, 789, 826
BspHI TCATGA 1 cut(s) 1066
BspLI GGNNCC 4 cut(s) 137, 283, 686, 699
BspMAI CTGCAG 1 cut(s) 111
BspPI GGATC 1 cut(s) 299
BspQI GCTCTTC 1 cut(s) 1316
BspT104I TTCGAA 1 cut(s) 164
BspT107I GGYRCC 1 cut(s) 684
BspTNI GGTCTC 1 cut(s) 1164
BsrDI GCAATG 4 cut(s) 715, 991, 1065, 1150
BsrI ACTGG 1 cut(s) 264
BssECI CCNNGG 4 cut(s) 285, 404, 791, 1224
BssMI GATC 3 cut(s) 211, 304, 1251
BssNAI GTATAC 1 cut(s) 88
BssT1I CCWWGG 2 cut(s) 404, 1224
Bst1107I GTATAC 1 cut(s) 88
Bst2UI CCWGG 1 cut(s) 286
Bst4CI ACNGT 8 cut(s) 85, 126, 507, 866, 936, 1037, 1120, 1316
Bst6I CTCTTC 1 cut(s) 1316
BstBI TTCGAA 1 cut(s) 164
BstC8I GCNNGC 5 cut(s) 458, 493, 593, 905, 1189
BstDEI CTNAG 3 cut(s) 102, 776, 834
BstDSI CCRYGG 1 cut(s) 791
BstF5I GGATG 2 cut(s) 139, 295
BstHHI GCGC 1 cut(s) 1354
BstKTI GATC 3 cut(s) 214, 307, 1254
BstMAI GTCTC 3 cut(s) 105, 890, 1164
BstMBI GATC 3 cut(s) 211, 304, 1251
BstMWI GCNNNNNNNGC 4 cut(s) 676, 1080, 1197, 1368
BstNI CCWGG 1 cut(s) 286
BstNSI RCATGY 2 cut(s) 595, 903
BstSCI CCNGG 1 cut(s) 284
BstSFI CTRYAG 1 cut(s) 107
BstSLI GKGCMC 1 cut(s) 264
BstV1I GCAGC 6 cut(s) 93, 121, 302, 995, 998, 1268
BstV2I GAAGAC 1 cut(s) 431
BstX2I RGATCY 1 cut(s) 304
BstXI CCANNNNNNTGG 1 cut(s) 947
BstYI RGATCY 1 cut(s) 304
BstZ17I GTATAC 1 cut(s) 88
BtgI CCRYGG 1 cut(s) 791
BtsCI GGATG 2 cut(s) 139, 295
BtsI GCAGTG 1 cut(s) 452
BtsIMutI CAGTG 4 cut(s) 452, 503, 831, 1125
Cac8I GCNNGC 5 cut(s) 458, 493, 593, 905, 1189
CciI TCATGA 1 cut(s) 1066
CfoI GCGC 1 cut(s) 1354
Csp6I GTAC 1 cut(s) 937
CspCI CAANNNNNGTGG 2 cut(s) 1297, 1332
CviAII CATG 7 cut(s) 469, 592, 782, 800, 900, 1067, 1128
CviQI GTAC 1 cut(s) 937
DdeI CTNAG 3 cut(s) 102, 776, 834
DpnI GATC 3 cut(s) 213, 306, 1253
DpnII GATC 3 cut(s) 211, 304, 1251
DraIII CACNNNGTG 2 cut(s) 827, 1348
Eam1104I CTCTTC 1 cut(s) 1316
EarI CTCTTC 1 cut(s) 1316
Ecl136II GAGCTC 1 cut(s) 1326
Eco130I CCWWGG 2 cut(s) 404, 1224
Eco24I GRGCYC 2 cut(s) 700, 1328
Eco31I GGTCTC 1 cut(s) 1164
Eco53kI GAGCTC 1 cut(s) 1326
Eco57I CTGAAG 1 cut(s) 425
EcoICRI GAGCTC 1 cut(s) 1326
EcoRI GAATTC 1 cut(s) 166
EcoRII CCWGG 1 cut(s) 284
EcoT14I CCWWGG 2 cut(s) 404, 1224
EcoT22I ATGCAT 1 cut(s) 1065
EcoT38I GRGCYC 2 cut(s) 700, 1328
ErhI CCWWGG 2 cut(s) 404, 1224
FaeI CATG 7 cut(s) 472, 595, 785, 803, 903, 1070, 1131
FalI AAGNNNNNCTT 2 cut(s) 1139, 1171
FatI CATG 7 cut(s) 468, 591, 781, 799, 899, 1066, 1127
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 7 cut(s) 107, 110, 316, 688, 1009, 1012, 1257
FokI GGATG 2 cut(s) 126, 302
FriOI GRGCYC 2 cut(s) 700, 1328
Fsp4HI GCNGC 7 cut(s) 107, 110, 316, 688, 1009, 1012, 1257
FspBI CTAG 2 cut(s) 132, 638
GlaI GCGC 1 cut(s) 1353
GluI GCNGC 7 cut(s) 107, 110, 316, 688, 1009, 1012, 1257
GsuI CTGGAG 1 cut(s) 321
HhaI GCGC 1 cut(s) 1354
Hin1II CATG 7 cut(s) 472, 595, 785, 803, 903, 1070, 1131
Hin6I GCGC 1 cut(s) 1352
HinP1I GCGC 1 cut(s) 1352
HincII GTYRAC 2 cut(s) 766, 862
HindII GTYRAC 2 cut(s) 766, 862
HinfI GANTC 4 cut(s) 364, 632, 648, 1100
HphI GGTGA 3 cut(s) 15, 823, 1031
Hpy166II GTNNAC 5 cut(s) 88, 766, 821, 862, 1133
Hpy188I TCNGA 5 cut(s) 64, 172, 201, 377, 779
Hpy188III TCNNGA 6 cut(s) 35, 300, 308, 638, 1067, 1104
Hpy8I GTNNAC 5 cut(s) 88, 766, 821, 862, 1133
HpyAV CCTTC 2 cut(s) 675, 1046
HpyCH4III ACNGT 8 cut(s) 85, 126, 507, 866, 936, 1037, 1120, 1316
HpyF10VI GCNNNNNNNGC 4 cut(s) 676, 1080, 1197, 1368
HpyF3I CTNAG 3 cut(s) 102, 776, 834
Hsp92II CATG 7 cut(s) 472, 595, 785, 803, 903, 1070, 1131
HspAI GCGC 1 cut(s) 1352
Kzo9I GATC 3 cut(s) 211, 304, 1251
LguI GCTCTTC 1 cut(s) 1316
LmnI GCTCC 4 cut(s) 392, 703, 1055, 1205
LpnPI CCDG 9 cut(s) 24, 271, 277, 285, 298, 321, 505, 794, 1089
Lsp1109I GCAGC 6 cut(s) 93, 121, 302, 995, 998, 1268
LweI GCATC 3 cut(s) 805, 1072, 1113
MaeI CTAG 2 cut(s) 132, 638
MaeIII GTNAC 3 cut(s) 21, 1037, 1114
MalI GATC 3 cut(s) 213, 306, 1253
MboI GATC 3 cut(s) 211, 304, 1251
MboII GAAGA 4 cut(s) 359, 431, 940, 1333
MflI RGATCY 1 cut(s) 304
MhlI GDGCHC 3 cut(s) 264, 700, 1328
MluCI AATT 7 cut(s) 166, 966, 982, 1020, 1181, 1299, 1366
MlyI GAGTC 2 cut(s) 642, 1094
MmeI TCCRAC 2 cut(s) 253, 390
MnlI CCTC 7 cut(s) 53, 381, 550, 638, 835, 1203, 1391
Mph1103I ATGCAT 1 cut(s) 1065
MseI TTAA 1 cut(s) 759
MslI CAYNNNNRTG 2 cut(s) 945, 1044
MspA1I CMGCKG 1 cut(s) 106
MspR9I CCNGG 1 cut(s) 286
Mva1269I GAATGC 2 cut(s) 194, 317
MvaI CCWGG 1 cut(s) 286
MwoI GCNNNNNNNGC 4 cut(s) 676, 1080, 1197, 1368
NdeII GATC 3 cut(s) 211, 304, 1251
NlaIII CATG 7 cut(s) 472, 595, 785, 803, 903, 1070, 1131
NlaIV GGNNCC 4 cut(s) 137, 283, 686, 699
NmuCI GTSAC 2 cut(s) 21, 1037
NsiI ATGCAT 1 cut(s) 1065
NspI RCATGY 2 cut(s) 595, 903
NspV TTCGAA 1 cut(s) 164
OliI CACNNNNGTG 1 cut(s) 1044
PaeI GCATGC 1 cut(s) 595
PagI TCATGA 1 cut(s) 1066
PciSI GCTCTTC 1 cut(s) 1316
PctI GAATGC 2 cut(s) 194, 317
PfeI GAWTC 2 cut(s) 364, 632
PflMI CCANNNNNTGG 2 cut(s) 241, 1230
PkrI GCNGC 7 cut(s) 108, 111, 317, 689, 1010, 1013, 1258
PleI GAGTC 2 cut(s) 642, 1094
PpsI GAGTC 2 cut(s) 642, 1094
PshBI ATTAAT 1 cut(s) 759
Psp124BI GAGCTC 1 cut(s) 1328
Psp6I CCWGG 1 cut(s) 284
PspGI CCWGG 1 cut(s) 284
PspN4I GGNNCC 4 cut(s) 137, 283, 686, 699
PstI CTGCAG 1 cut(s) 111
PsuI RGATCY 1 cut(s) 304
PvuII CAGCTG 1 cut(s) 106
RsaI GTAC 1 cut(s) 938
RsaNI GTAC 1 cut(s) 937
RseI CAYNNNNRTG 2 cut(s) 945, 1044
SacI GAGCTC 1 cut(s) 1328
SapI GCTCTTC 1 cut(s) 1316
SaqAI TTAA 1 cut(s) 759
SatI GCNGC 7 cut(s) 107, 110, 316, 688, 1009, 1012, 1257
Sau3AI GATC 3 cut(s) 211, 304, 1251
SchI GAGTC 2 cut(s) 642, 1094
ScrFI CCNGG 1 cut(s) 286
SduI GDGCHC 3 cut(s) 264, 700, 1328
SfaNI GCATC 3 cut(s) 805, 1072, 1113
SfcI CTRYAG 1 cut(s) 107
SfuI TTCGAA 1 cut(s) 164
SmiMI CAYNNNNRTG 2 cut(s) 945, 1044
SmlI CTYRAG 1 cut(s) 1102
SmoI CTYRAG 1 cut(s) 1102
SphI GCATGC 1 cut(s) 595
Sse9I AATT 7 cut(s) 166, 966, 982, 1020, 1181, 1299, 1366
SsiI CCGC 2 cut(s) 668, 688
SspI AATATT 1 cut(s) 757
SspMI CTAG 2 cut(s) 132, 638
SstI GAGCTC 1 cut(s) 1328
StyD4I CCNGG 1 cut(s) 284
StyI CCWWGG 2 cut(s) 404, 1224
TaaI ACNGT 8 cut(s) 85, 126, 507, 866, 936, 1037, 1120, 1316
TaqI TCGA 5 cut(s) 164, 804, 926, 1086, 1098
TasI AATT 7 cut(s) 166, 966, 982, 1020, 1181, 1299, 1366
TauI GCSGC 1 cut(s) 690
TfiI GAWTC 2 cut(s) 364, 632
Tru1I TTAA 1 cut(s) 759
Tru9I TTAA 1 cut(s) 759
TscAI CASTG 4 cut(s) 452, 510, 838, 1125
TseFI GTSAC 2 cut(s) 21, 1037
TseI GCWGC 6 cut(s) 106, 109, 315, 1008, 1011, 1256
Tsp45I GTSAC 2 cut(s) 21, 1037
TspDTI ATGAA 4 cut(s) 377, 633, 756, 980
TspRI CASTG 4 cut(s) 452, 510, 838, 1125
Van91I CCANNNNNTGG 2 cut(s) 241, 1230
VspI ATTAAT 1 cut(s) 759
XapI RAATTY 1 cut(s) 166
XbaI TCTAGA 1 cut(s) 637
XceI RCATGY 2 cut(s) 595, 903
XmiI GTMKAC 1 cut(s) 87
XspI CTAG 2 cut(s) 132, 638
Zsp2I ATGCAT 1 cut(s) 1065
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.