RchiOBHm_Chr6g0312621

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0005253
Physical Location & Seq
Reverse (-)
69229361 .. 69234167
4807 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28124

Sequence Viewer

Length: 870 bp
ATGCTTACACAGAGAGTGATGGAGGAGTTCCACTCTCATCTATCAAATGGGAAGTGCATGCTCACAATTGAAGCAAAGGACAATGAAAAGTCCATCGAATCTCTTGATAGAGGACTCACAGAGTATGGTTGTCCGCATTATCGGCGAAGGTGCCGCATTAGGGCTCCTTGTTGCAATGAGATTTTTGATTGTCGCCATTGTCATAATGAAGCAAAGAACGATATTAATGTTGACCCAAAACTCAGACATGACATACCACGGCATCAAGTCGAACAGGTGATATGTTCACTTTGTGGCACTGAGCAAGAGGTTCAACAAGTCTGTGTCAACTGTGGTGTATGTATGGGCAAATACTTCTGTGAGACATGCAAGCTATTTGATGATGATATATCAAAGAAACAGTACCATTGCGGTGGCTGTGGGATATGCAGAATTGGGGGGCGTGATAATTTCTTTCATTGCTACAAATGTGGCTGCTGCTACTCAATTCTGCTGAAAAACAGTCACCCTTGTGTGGAAGGAGCAATGCATCATGACTGCCCTGTTTGCTTCGAGTTCTTATTCGACTCGAGAAATGATGTTACAGTGATGCCATGTGGACACACTATTCACAAGCATTGCTTGAAAGAGATGAGAGACCATTTGCAATATGCTTGCCCTCTTTGCTCCAAGTCAGTTTGTGATATGTCCAAGGTATGGGAGAAATATGATATGGAGATCGCAGCTACACCAATGCCCGAACCATATCAAAATATACAAGTTTCAATTCTGTGCAACGACTGTGGGAAGAGCTCACAAGTGCAGTTTCATATTGTGGCGCAGAAATGCTCAAATTGCAAATCTTACAATACTCGTCAAACAAGAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0002039 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

289

Amino Acids

33.19

Weight (kDa)

7.16

Isoelectric Point (pI)

49.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CHY PF05495 44 - 118 5.2e-19 CHY zinc finger
zf-RING_2 PF13639 179 - 222 3.2e-08 Ring finger domain
zf-RING_5 PF14634 179 - 224 3.2e-07 zinc-RING finger domain
zf-C3HC4 PF00097 180 - 222 9.1e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 180 - 220 1e-05 RING-type zinc-finger
zinc_ribbon_6 PF14599 227 - 285 8.4e-26 Zinc-ribbon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 150
AccB7I CCANNNNNTGG 1 cut(s) 696
AciI CCGC 3 cut(s) 134, 154, 411
AdeI CACNNNGTG 1 cut(s) 293
AfaI GTAC 1 cut(s) 404
AfiI CCNNNNNNNGG 3 cut(s) 160, 514, 696
AgsI TTSAA 4 cut(s) 71, 314, 625, 765
AleI CACNNNNGTG 1 cut(s) 510
AluBI AGCT 3 cut(s) 373, 725, 792
AluI AGCT 3 cut(s) 373, 725, 792
Alw21I GWGCWC 1 cut(s) 794
Alw26I GTCTC 2 cut(s) 356, 630
Ama87I CYCGRG 1 cut(s) 568
ApeKI GCWGC 3 cut(s) 474, 477, 722
AseI ATTAAT 1 cut(s) 225
AspLEI GCGC 1 cut(s) 820
AsuHPI GGTGA 2 cut(s) 289, 497
AvaI CYCGRG 1 cut(s) 568
BanI GGYRCC 1 cut(s) 150
BanII GRGCYC 2 cut(s) 166, 794
Bbv12I GWGCWC 1 cut(s) 794
BbvI GCAGC 3 cut(s) 461, 464, 734
BccI CCATC 2 cut(s) 13, 101
BceAI ACGGC 1 cut(s) 275
BcoDI GTCTC 2 cut(s) 356, 630
BisI GCNGC 4 cut(s) 154, 475, 478, 723
BlsI GCNGC 4 cut(s) 155, 476, 479, 724
BmeT110I CYCGRG 1 cut(s) 568
BmiI GGNNCC 2 cut(s) 152, 165
BmsI GCATC 3 cut(s) 271, 538, 579
BplI GAGNNNNNCTC 2 cut(s) 17, 49
BsaI GGTCTC 1 cut(s) 630
BsaJI CCNNGG 2 cut(s) 257, 690
Bsc4I CCNNNNNNNGG 3 cut(s) 160, 514, 696
Bse3DI GCAATG 5 cut(s) 181, 406, 457, 531, 616
BseDI CCNNGG 2 cut(s) 257, 690
BseLI CCNNNNNNNGG 3 cut(s) 160, 514, 696
BseMI GCAATG 5 cut(s) 181, 406, 457, 531, 616
BseMII CTCAG 2 cut(s) 256, 291
BseRI GAGGAG 1 cut(s) 38
BseXI GCAGC 3 cut(s) 461, 464, 734
BsgI GTGCAG 1 cut(s) 821
BshNI GGYRCC 1 cut(s) 150
BsiHKAI GWGCWC 1 cut(s) 794
BsiHKCI CYCGRG 1 cut(s) 568
BslI CCNNNNNNNGG 3 cut(s) 160, 514, 696
BsmAI GTCTC 2 cut(s) 356, 630
Bso31I GGTCTC 1 cut(s) 630
BsoBI CYCGRG 1 cut(s) 568
Bsp1286I GDGCHC 2 cut(s) 166, 794
Bsp143I GATC 1 cut(s) 717
BspACI CCGC 3 cut(s) 134, 154, 411
BspCNI CTCAG 2 cut(s) 255, 292
BspHI TCATGA 1 cut(s) 532
BspLI GGNNCC 2 cut(s) 152, 165
BspQI GCTCTTC 1 cut(s) 782
BspT107I GGYRCC 1 cut(s) 150
BspTNI GGTCTC 1 cut(s) 630
BsrDI GCAATG 5 cut(s) 181, 406, 457, 531, 616
BssECI CCNNGG 2 cut(s) 257, 690
BssMI GATC 1 cut(s) 717
BssT1I CCWWGG 1 cut(s) 690
Bst4CI ACNGT 5 cut(s) 332, 402, 503, 586, 782
Bst6I CTCTTC 1 cut(s) 782
BstC8I GCNNGC 3 cut(s) 59, 371, 655
BstDEI CTNAG 2 cut(s) 242, 300
BstDSI CCRYGG 1 cut(s) 257
BstHHI GCGC 1 cut(s) 820
BstKTI GATC 1 cut(s) 720
BstMAI GTCTC 2 cut(s) 356, 630
BstMBI GATC 1 cut(s) 717
BstMWI GCNNNNNNNGC 4 cut(s) 142, 546, 663, 834
BstNSI RCATGY 2 cut(s) 61, 369
BstV1I GCAGC 3 cut(s) 461, 464, 734
BstXI CCANNNNNNTGG 1 cut(s) 413
BtgI CCRYGG 1 cut(s) 257
BtsIMutI CAGTG 2 cut(s) 297, 591
Cac8I GCNNGC 3 cut(s) 59, 371, 655
CciI TCATGA 1 cut(s) 532
CfoI GCGC 1 cut(s) 820
Csp6I GTAC 1 cut(s) 403
CspCI CAANNNNNGTGG 2 cut(s) 763, 798
CviAII CATG 5 cut(s) 58, 248, 366, 533, 594
CviJI RGCY 7 cut(s) 164, 373, 417, 474, 725, 792, 867
CviKI_1 RGCY 7 cut(s) 164, 373, 417, 474, 725, 792, 867
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 2 cut(s) 242, 300
DpnI GATC 1 cut(s) 719
DpnII GATC 1 cut(s) 717
DraIII CACNNNGTG 1 cut(s) 293
Eam1104I CTCTTC 1 cut(s) 782
EarI CTCTTC 1 cut(s) 782
Ecl136II GAGCTC 1 cut(s) 792
Eco130I CCWWGG 1 cut(s) 690
Eco24I GRGCYC 2 cut(s) 166, 794
Eco31I GGTCTC 1 cut(s) 630
Eco53kI GAGCTC 1 cut(s) 792
Eco88I CYCGRG 1 cut(s) 568
EcoICRI GAGCTC 1 cut(s) 792
EcoT14I CCWWGG 1 cut(s) 690
EcoT22I ATGCAT 1 cut(s) 531
EcoT38I GRGCYC 2 cut(s) 166, 794
ErhI CCWWGG 1 cut(s) 690
FaeI CATG 5 cut(s) 61, 251, 369, 536, 597
FalI AAGNNNNNCTT 2 cut(s) 605, 637
FatI CATG 5 cut(s) 57, 247, 365, 532, 593
Fnu4HI GCNGC 4 cut(s) 154, 475, 478, 723
FriOI GRGCYC 2 cut(s) 166, 794
Fsp4HI GCNGC 4 cut(s) 154, 475, 478, 723
GlaI GCGC 1 cut(s) 819
GluI GCNGC 4 cut(s) 154, 475, 478, 723
HhaI GCGC 1 cut(s) 820
Hin1II CATG 5 cut(s) 61, 251, 369, 536, 597
Hin6I GCGC 1 cut(s) 818
HinP1I GCGC 1 cut(s) 818
HincII GTYRAC 2 cut(s) 232, 328
HindII GTYRAC 2 cut(s) 232, 328
HinfI GANTC 3 cut(s) 98, 114, 566
HphI GGTGA 2 cut(s) 289, 497
Hpy166II GTNNAC 4 cut(s) 232, 287, 328, 599
Hpy188I TCNGA 1 cut(s) 245
Hpy188III TCNNGA 3 cut(s) 104, 533, 570
Hpy8I GTNNAC 4 cut(s) 232, 287, 328, 599
HpyAV CCTTC 2 cut(s) 141, 512
HpyCH4III ACNGT 5 cut(s) 332, 402, 503, 586, 782
HpyCH4V TGCA 9 cut(s) 57, 174, 369, 429, 529, 646, 774, 802, 837
HpyF10VI GCNNNNNNNGC 4 cut(s) 142, 546, 663, 834
HpyF3I CTNAG 2 cut(s) 242, 300
Hsp92II CATG 5 cut(s) 61, 251, 369, 536, 597
HspAI GCGC 1 cut(s) 818
Kzo9I GATC 1 cut(s) 717
LguI GCTCTTC 1 cut(s) 782
LmnI GCTCC 3 cut(s) 169, 521, 671
LpnPI CCDG 2 cut(s) 260, 555
Lsp1109I GCAGC 3 cut(s) 461, 464, 734
LweI GCATC 3 cut(s) 271, 538, 579
MaeIII GTNAC 2 cut(s) 503, 580
MalI GATC 1 cut(s) 719
MboI GATC 1 cut(s) 717
MboII GAAGA 1 cut(s) 799
MfeI CAATTG 1 cut(s) 66
MhlI GDGCHC 2 cut(s) 166, 794
MluCI AATT 6 cut(s) 66, 432, 448, 486, 765, 832
MlyI GAGTC 2 cut(s) 108, 560
MnlI CCTC 5 cut(s) 16, 104, 301, 669, 857
Mph1103I ATGCAT 1 cut(s) 531
MseI TTAA 1 cut(s) 225
MslI CAYNNNNRTG 2 cut(s) 411, 510
MunI CAATTG 1 cut(s) 66
MwoI GCNNNNNNNGC 4 cut(s) 142, 546, 663, 834
NdeII GATC 1 cut(s) 717
NlaIII CATG 5 cut(s) 61, 251, 369, 536, 597
NlaIV GGNNCC 2 cut(s) 152, 165
NmuCI GTSAC 1 cut(s) 503
NsiI ATGCAT 1 cut(s) 531
NspI RCATGY 2 cut(s) 61, 369
OliI CACNNNNGTG 1 cut(s) 510
PaeI GCATGC 1 cut(s) 61
PaeR7I CTCGAG 1 cut(s) 568
PagI TCATGA 1 cut(s) 532
PciSI GCTCTTC 1 cut(s) 782
PfeI GAWTC 1 cut(s) 98
PflMI CCANNNNNTGG 1 cut(s) 696
PkrI GCNGC 4 cut(s) 155, 476, 479, 724
PleI GAGTC 2 cut(s) 108, 560
PpsI GAGTC 2 cut(s) 108, 560
PshBI ATTAAT 1 cut(s) 225
Psp124BI GAGCTC 1 cut(s) 794
PspN4I GGNNCC 2 cut(s) 152, 165
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
RseI CAYNNNNRTG 2 cut(s) 411, 510
SacI GAGCTC 1 cut(s) 794
SapI GCTCTTC 1 cut(s) 782
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 4 cut(s) 154, 475, 478, 723
Sau3AI GATC 1 cut(s) 717
SchI GAGTC 2 cut(s) 108, 560
SduI GDGCHC 2 cut(s) 166, 794
SetI ASST 7 cut(s) 152, 279, 312, 375, 696, 727, 794
SfaNI GCATC 3 cut(s) 271, 538, 579
Sfr274I CTCGAG 1 cut(s) 568
SlaI CTCGAG 1 cut(s) 568
SmiMI CAYNNNNRTG 2 cut(s) 411, 510
SmlI CTYRAG 1 cut(s) 568
SmoI CTYRAG 1 cut(s) 568
SphI GCATGC 1 cut(s) 61
Sse9I AATT 6 cut(s) 66, 432, 448, 486, 765, 832
SsiI CCGC 3 cut(s) 134, 154, 411
SstI GAGCTC 1 cut(s) 794
StyI CCWWGG 1 cut(s) 690
TaaI ACNGT 5 cut(s) 332, 402, 503, 586, 782
TaqI TCGA 5 cut(s) 96, 270, 552, 564, 569
TasI AATT 6 cut(s) 66, 432, 448, 486, 765, 832
TauI GCSGC 1 cut(s) 156
TfiI GAWTC 1 cut(s) 98
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 2 cut(s) 304, 591
TseFI GTSAC 1 cut(s) 503
TseI GCWGC 3 cut(s) 474, 477, 722
Tsp45I GTSAC 1 cut(s) 503
TspDTI ATGAA 4 cut(s) 99, 222, 446, 797
TspRI CASTG 2 cut(s) 304, 591
Van91I CCANNNNNTGG 1 cut(s) 696
VspI ATTAAT 1 cut(s) 225
XceI RCATGY 2 cut(s) 61, 369
XhoI CTCGAG 1 cut(s) 568
Zsp2I ATGCAT 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.