Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005253

Physical Location & Seq

Genomic Coordinates Forward (+)

54339376 .. 54343248

Gene Structure 3873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0397500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1605 bp

ATGCATAATCCTTCGATAACCACCACCCAGGAACCCAGTCCTGTCTATGACCTTGTGTCCCAATTGGGTCGGTTTGCCTTGAGCACAAGGTTTCGAAACCTGCGCTCTGAGGGCCACTCCGCCCTTTTGTCTAATTTCCTCTACTTTGATGGGCCCAGAAACCCCAAGGTCAGTGCTTCTCTCAGTTTGAACACTAGAGGCAGCGGCTCCAGCATTCGGAGAATTGTCACCGAGTTCAATAGAGCTATTAGGTTCCATTGTGACAAATTCCCTATTGGCTTCGCTTCTCTTGGCGTTGGTGGTGGGGATAGCAATGGATCAGATAATGGTGCCGGTGCCGCGGACGACAATAATGGATTGAGAGACAATGGCTGCGCTCTTAACGACAATGGAGTAGCCTTGAATGGTGCGGTGGCAGGCAGCGCCAAAAAAGTGCTGATTTTGATGAGTGACACCGGGGGCGGTCATAGAGCTTCAGCAGAAGCTATTAAGGCAGCCTTTAATGAAGAATTTGGAGATGAATATCAGGTGTTTGTTACAGACTTATGGTCGGATCATACGCCTTGGCCATTTAATCAACTTCCCAGGAGCTATAATTTCTTGGTGAAACATGGACCATTATGGAAAATGACATATTATGGAACTGCTCCACGCCTGGTGCATCAATCTAATTTTGCTGCGACTTCAACATTTATAGCTCGGGAGGTTGCCAAAGGACTGATGAAATACCAGCCAGATATTATTATCAGTGTGCATCCGCTGATGCAACACGTACCACTTCGTGTACTGAGGCAAAAGGGTCTGTTGGAGAAGATAGTTTTTACTACAGTCATCACAGATTTAAGCACTTGTCATCCTACATGGTTTCATAAGCTTGTAACAAGATGTTATTGTCCGACATCTGAGGTTGCGAAAAGGGCATCGAAAGCCGGACTCAAGCCTTCGCAAATCAAGGTTTATGGCCTCCCTGTGCGGCCTTCTTTTGTCAAGCCTGTGCGACCAAAGGCTGAGCTTCGGAGAGAATTAGGAATGGAAGAGCATCTTCCTTCTGTGTTGCTGATGGGAGGAGGAGAAGGGATGGGTCCTATTGAGGCTACAGCCCGAGCACTTGGGGATGCATTATATGATGAAAATCTTGGGGAGCCTATGGGTCAGGTCCTTGTGGTATGTGGTCGCAACAAAAAGCTTGCAGAAAAGTTGCGCGCAATCAATTGGAAGGTTCCTGTCCAGGTGAAGGGATTTGTCACTAAAATGGAGGAAGGCATGGGAGCTTGTGATTGCATAATTACAAAGGCGGGCCCAGGGACTATTGCAGAAGCAATGATAAGAGGCCTCCCAATTATTCTGAATGATTACATTGCGGGGCAGGAAGTTGGAAATGTCCCATATGTTGTCGAAAACGGGTGTGGGAAATATTCTAAATCTCCAAAAGAGATAGCAAGGATTGTTTCAGAGTGGTTTGGTCCAAAAGCTGATGAGCTGCAGGCGATGTCGCAAAACGCATTGAAGCTGGCAAGGCCTGATTCTGTGTTCAAGATTGTTCATGATATGCACGAGCTTGTTCGACAACGAAGCTTTGTACCCCAGTACTCATGTACAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0002039 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

ko04115 ko04120 ko05162 map04115 map04120 map05162

Pfam Domains

Protein Families

zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

534

Amino Acids

58.45

Weight (kDa)

9.12

Isoelectric Point (pI)

38.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MGDG_synth	PF06925	156 - 324	5.3e-63	Monogalactosyldiacylglycerol (MGDG) synthase
Glyco_tran_28_C	PF04101	381 - 472	1.1e-08	Glycosyltransferase family 28 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25560 AT5G25560 AT5G25560 AT5G25560 AT5G25560 AT5G25560
fragaria_vesca	FvH4_2g30250 FvH4_2g30250 FvH4_2g30250
malus_domestica	MD08G1135100.v1.1 MD15G1113900.v1.1
prunus_persica	Prupe.1G465000_v2.0.a1
pyrus_communis	pycom08g11400 pycom15g10220
rosa_chinensis	RchiOBHm_Chr6g0312621
rosa_laevigata	RLG00000010310
rosa_multiflora	Rmu_co8415537.1_g000003 Rmu_sc0002859.1_g000008 Rmu_ssc0000412.1_g000002
rosa_roxburghii	Rroxscaffold_7G00156640
rosa_rugosa	Rorug06G0397500 Rorug06G0397600 Rorug06G0397700 Rorug06G0397800
rosa_samantha	Rh6AG515000 Rh6BG525000 Rh6CG530400 Rh6DG517100
rosa_wichuraiana	Rw6G044740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	108
AccB1I	GGYRCC	2 cut(s)	329, 335
AccII	CGCG	2 cut(s)	341, 1203
AclWI	GGATC	2 cut(s)	325, 561
AcoI	YGGCCR	1 cut(s)	566
AcsI	RAATTY	2 cut(s)	266, 509
AcuI	CTGAAG	1 cut(s)	459
AdeI	CACNNNGTG	1 cut(s)	782
AfaI	GTAC	5 cut(s)	774, 786, 1581, 1589, 1597
AfiI	CCNNNNNNNGG	2 cut(s)	216, 1234
AflIII	ACRYGT	1 cut(s)	769
AgsI	TTSAA	6 cut(s)	190, 238, 403, 687, 1507, 1534
AhdI	GACNNNNNGTC	2 cut(s)	55, 547
AjnI	CCWGG	5 cut(s)	27, 584, 654, 1227, 1300
Alw21I	GWGCWC	2 cut(s)	86, 1108
Alw26I	GTCTC	1 cut(s)	357
AlwI	GGATC	2 cut(s)	325, 561
Ama87I	CYCGRG	2 cut(s)	699, 1101
AoxI	GGCC	8 cut(s)	112, 152, 566, 961, 974, 1297, 1330, 1517
ApaI	GGGCCC	2 cut(s)	156, 1301
ApeKI	GCWGC	6 cut(s)	201, 372, 420, 494, 677, 1480
ApoI	RAATTY	2 cut(s)	266, 509
AspLEI	GCGC	5 cut(s)	105, 377, 425, 1203, 1205
AspS9I	GGNCC	9 cut(s)	112, 152, 153, 614, 1082, 1156, 1297, 1298, 1463
AsuC2I	CCSGG	1 cut(s)	457
AsuHPI	GGTGA	3 cut(s)	220, 616, 1243
AsuII	TTCGAA	1 cut(s)	94
AvaI	CYCGRG	2 cut(s)	699, 1101
AvaII	GGWCC	4 cut(s)	614, 1082, 1156, 1463
BaeGI	GKGCMC	2 cut(s)	156, 1301
BalI	TGGCCA	1 cut(s)	568
BanI	GGYRCC	2 cut(s)	329, 335
BanII	GRGCYC	2 cut(s)	156, 1301
BauI	CACGAG	1 cut(s)	1553
Bbv12I	GWGCWC	2 cut(s)	86, 1108
BbvI	GCAGC	6 cut(s)	213, 359, 432, 506, 664, 1467
BccI	CCATC	3 cut(s)	143, 1054, 1072
BciT130I	CCWGG	5 cut(s)	29, 586, 656, 1229, 1302
BcnI	CCSGG	1 cut(s)	457
BcoDI	GTCTC	1 cut(s)	357
BfaI	CTAG	1 cut(s)	195
BfmI	CTRYAG	3 cut(s)	825, 1095, 1481
BfoI	RGCGCY	1 cut(s)	426
BfuAI	ACCTGC	1 cut(s)	108
BisI	GCNGC	9 cut(s)	202, 205, 339, 373, 421, 495, 678, 974, 1481
BlpI	GCTNAGC	1 cut(s)	1008
BlsI	GCNGC	9 cut(s)	203, 206, 340, 374, 422, 496, 679, 975, 1482
BmcAI	AGTACT	1 cut(s)	1589
Bme1390I	CCNGG	6 cut(s)	29, 457, 586, 656, 1229, 1302
Bme18I	GGWCC	4 cut(s)	614, 1082, 1156, 1463
BmeRI	GACNNNNNGTC	2 cut(s)	55, 547
BmeT110I	CYCGRG	2 cut(s)	699, 1101
BmgT120I	GGNCC	9 cut(s)	112, 152, 153, 614, 1082, 1156, 1297, 1298, 1463
BmrFI	CCNGG	6 cut(s)	29, 457, 586, 656, 1229, 1302
BmrI	ACTGGG	2 cut(s)	30, 1579
BmsI	GCATC	6 cut(s)	670, 753, 763, 929, 1048, 1105
BmuI	ACTGGG	2 cut(s)	30, 1579
BplI	GAGNNNNNCTC	2 cut(s)	101, 133
BpmI	CTGGAG	1 cut(s)	193
Bpu1102I	GCTNAGC	1 cut(s)	1008
Bpu14I	TTCGAA	1 cut(s)	94
BpuEI	CTTGAG	2 cut(s)	100, 920
BpuMI	CCSGG	1 cut(s)	457
BsaAI	YACGTR	1 cut(s)	772
BsaBI	GATNNNNATC	2 cut(s)	522, 1131
BsaJI	CCNNGG	8 cut(s)	27, 165, 339, 456, 563, 584, 1300, 1301
Bsc4I	CCNNNNNNNGG	2 cut(s)	216, 1234
Bse118I	RCCGGY	1 cut(s)	332
Bse1I	ACTGG	2 cut(s)	36, 1585
Bse3DI	GCAATG	3 cut(s)	319, 1326, 1356
Bse8I	GATNNNNATC	2 cut(s)	522, 1131
BseBI	CCWGG	5 cut(s)	29, 586, 656, 1229, 1302
BseDI	CCNNGG	8 cut(s)	27, 165, 339, 456, 563, 584, 1300, 1301
BseGI	GGATG	4 cut(s)	754, 853, 1083, 1120
BseJI	GATNNNNATC	2 cut(s)	522, 1131
BseLI	CCNNNNNNNGG	2 cut(s)	216, 1234
BseMI	GCAATG	3 cut(s)	319, 1326, 1356
BseMII	CTCAG	5 cut(s)	99, 196, 779, 894, 999
BseNI	ACTGG	2 cut(s)	36, 1585
BsePI	GCGCGC	1 cut(s)	1201
BseRI	GAGGAG	2 cut(s)	1080, 1083
BseSI	GKGCMC	2 cut(s)	156, 1301
BseXI	GCAGC	6 cut(s)	213, 359, 432, 506, 664, 1467
Bsh1236I	CGCG	2 cut(s)	341, 1203
BshFI	GGCC	8 cut(s)	114, 154, 568, 963, 976, 1299, 1332, 1519
BshNI	GGYRCC	2 cut(s)	329, 335
BsiHKAI	GWGCWC	2 cut(s)	86, 1108
BsiHKCI	CYCGRG	2 cut(s)	699, 1101
BsiSI	CCGG	3 cut(s)	333, 456, 930
BslFI	GGGAC	3 cut(s)	43, 1318, 1367
BslI	CCNNNNNNNGG	2 cut(s)	216, 1234
BsmAI	GTCTC	1 cut(s)	357
BsmFI	GGGAC	3 cut(s)	43, 1318, 1367
BsmI	GAATGC	1 cut(s)	213
BsnI	GGCC	8 cut(s)	114, 154, 568, 963, 976, 1299, 1332, 1519
BsoBI	CYCGRG	2 cut(s)	699, 1101
Bsp119I	TTCGAA	1 cut(s)	94
Bsp120I	GGGCCC	2 cut(s)	152, 1297
Bsp1286I	GDGCHC	4 cut(s)	86, 156, 1108, 1301
Bsp1407I	TGTACA	1 cut(s)	1595
Bsp143I	GATC	2 cut(s)	317, 553
Bsp1720I	GCTNAGC	1 cut(s)	1008
BspANI	GGCC	8 cut(s)	114, 154, 568, 963, 976, 1299, 1332, 1519
BspCNI	CTCAG	5 cut(s)	100, 195, 780, 895, 1000
BspFNI	CGCG	2 cut(s)	341, 1203
BspHI	TCATGA	1 cut(s)	1543
BspMAI	CTGCAG	1 cut(s)	1485
BspMI	ACCTGC	1 cut(s)	108
BspPI	GGATC	2 cut(s)	325, 561
BspQI	GCTCTTC	1 cut(s)	1029
BspT104I	TTCGAA	1 cut(s)	94
BspT107I	GGYRCC	2 cut(s)	329, 335
BsrDI	GCAATG	3 cut(s)	319, 1326, 1356
BsrFI	RCCGGY	1 cut(s)	332
BsrGI	TGTACA	1 cut(s)	1595
BsrI	ACTGG	2 cut(s)	36, 1585
BssAI	RCCGGY	1 cut(s)	332
BssECI	CCNNGG	8 cut(s)	27, 165, 339, 456, 563, 584, 1300, 1301
BssHII	GCGCGC	1 cut(s)	1201
BssMI	GATC	2 cut(s)	317, 553
BssSI	CACGAG	1 cut(s)	1553
BssT1I	CCWWGG	2 cut(s)	165, 563
Bst2BI	CACGAG	1 cut(s)	1553
Bst2UI	CCWGG	5 cut(s)	29, 586, 656, 1229, 1302
Bst4CI	ACNGT	1 cut(s)	829
Bst6I	CTCTTC	1 cut(s)	1029
BstAUI	TGTACA	1 cut(s)	1595
BstBAI	YACGTR	1 cut(s)	772
BstBI	TTCGAA	1 cut(s)	94
BstC8I	GCNNGC	6 cut(s)	418, 1188, 1203, 1297, 1485, 1512
BstDEI	CTNAG	5 cut(s)	108, 182, 788, 903, 1008
BstDSI	CCRYGG	1 cut(s)	339
BstF5I	GGATG	4 cut(s)	754, 853, 1083, 1120
BstFNI	CGCG	2 cut(s)	341, 1203
BstH2I	RGCGCY	1 cut(s)	426
BstHHI	GCGC	5 cut(s)	105, 377, 425, 1203, 1205
BstKTI	GATC	2 cut(s)	320, 556
BstMAI	GTCTC	1 cut(s)	357
BstMBI	GATC	2 cut(s)	317, 553
BstMWI	GCNNNNNNNGC	8 cut(s)	111, 210, 338, 422, 491, 917, 926, 1516
BstNI	CCWGG	5 cut(s)	29, 586, 656, 1229, 1302
BstSCI	CCNGG	6 cut(s)	27, 455, 584, 654, 1227, 1300
BstSFI	CTRYAG	3 cut(s)	825, 1095, 1481
BstSLI	GKGCMC	2 cut(s)	156, 1301
BstUI	CGCG	2 cut(s)	341, 1203
BstV1I	GCAGC	6 cut(s)	213, 359, 432, 506, 664, 1467
BsuRI	GGCC	8 cut(s)	114, 154, 568, 963, 976, 1299, 1332, 1519
BtgI	CCRYGG	1 cut(s)	339
BtgZI	GCGATG	1 cut(s)	1502
BtsCI	GGATG	4 cut(s)	754, 853, 1083, 1120
BtsIMutI	CAGTG	2 cut(s)	178, 754
BveI	ACCTGC	1 cut(s)	108
Cac8I	GCNNGC	6 cut(s)	418, 1188, 1203, 1297, 1485, 1512
CciI	TCATGA	1 cut(s)	1543
CfoI	GCGC	5 cut(s)	105, 377, 425, 1203, 1205
Cfr10I	RCCGGY	1 cut(s)	332
Cfr13I	GGNCC	9 cut(s)	112, 152, 153, 614, 1082, 1156, 1297, 1298, 1463
Cfr42I	CCGCGG	1 cut(s)	342
Csp6I	GTAC	5 cut(s)	773, 785, 1580, 1588, 1596
CviAII	CATG	5 cut(s)	611, 861, 1264, 1544, 1593
CviQI	GTAC	5 cut(s)	773, 785, 1580, 1588, 1596
DdeI	CTNAG	5 cut(s)	108, 182, 788, 903, 1008
DpnI	GATC	2 cut(s)	319, 555
DpnII	GATC	2 cut(s)	317, 553
DraIII	CACNNNGTG	1 cut(s)	782
DriI	GACNNNNNGTC	2 cut(s)	55, 547
EaeI	YGGCCR	1 cut(s)	566
Eam1104I	CTCTTC	1 cut(s)	1029
Eam1105I	GACNNNNNGTC	2 cut(s)	55, 547
EarI	CTCTTC	1 cut(s)	1029
EciI	GGCGGA	1 cut(s)	109
Eco130I	CCWWGG	2 cut(s)	165, 563
Eco147I	AGGCCT	2 cut(s)	1332, 1519
Eco24I	GRGCYC	2 cut(s)	156, 1301
Eco47I	GGWCC	4 cut(s)	614, 1082, 1156, 1463
Eco57I	CTGAAG	1 cut(s)	459
Eco88I	CYCGRG	2 cut(s)	699, 1101
EcoO109I	RGGNCCY	2 cut(s)	1082, 1156
EcoRII	CCWGG	5 cut(s)	27, 584, 654, 1227, 1300
EcoT14I	CCWWGG	2 cut(s)	165, 563
EcoT22I	ATGCAT	2 cut(s)	6, 1120
EcoT38I	GRGCYC	2 cut(s)	156, 1301
ErhI	CCWWGG	2 cut(s)	165, 563
FaeI	CATG	5 cut(s)	614, 864, 1267, 1547, 1596
FalI	AAGNNNNNCTT	4 cut(s)	482, 514, 1026, 1058
FaqI	GGGAC	3 cut(s)	43, 1318, 1367
FatI	CATG	5 cut(s)	610, 860, 1263, 1543, 1592
FauI	CCCGC	2 cut(s)	1288, 1354
FauNDI	CATATG	1 cut(s)	1387
Fnu4HI	GCNGC	9 cut(s)	202, 205, 339, 373, 421, 495, 678, 974, 1481
FokI	GGATG	4 cut(s)	741, 840, 1090, 1127
FriOI	GRGCYC	2 cut(s)	156, 1301
Fsp4HI	GCNGC	9 cut(s)	202, 205, 339, 373, 421, 495, 678, 974, 1481
FspBI	CTAG	1 cut(s)	195
GlaI	GCGC	5 cut(s)	104, 376, 424, 1202, 1204
GluI	GCNGC	9 cut(s)	202, 205, 339, 373, 421, 495, 678, 974, 1481
GsuI	CTGGAG	1 cut(s)	193
HaeII	RGCGCY	1 cut(s)	426
HaeIII	GGCC	8 cut(s)	114, 154, 568, 963, 976, 1299, 1332, 1519
HapII	CCGG	3 cut(s)	333, 456, 930
HhaI	GCGC	5 cut(s)	105, 377, 425, 1203, 1205
Hin1II	CATG	5 cut(s)	614, 864, 1267, 1547, 1596
Hin6I	GCGC	5 cut(s)	103, 375, 423, 1201, 1203
HinP1I	GCGC	5 cut(s)	103, 375, 423, 1201, 1203
HindIII	AAGCTT	3 cut(s)	872, 1184, 1573
HinfI	GANTC	2 cut(s)	933, 1523
HpaII	CCGG	3 cut(s)	333, 456, 930
HphI	GGTGA	3 cut(s)	220, 616, 1243
Hpy166II	GTNNAC	1 cut(s)	785
Hpy188I	TCNGA	9 cut(s)	109, 219, 322, 553, 897, 904, 1017, 1347, 1453
Hpy188III	TCNNGA	3 cut(s)	701, 1534, 1544
Hpy8I	GTNNAC	1 cut(s)	785
HpyAV	CCTTC	8 cut(s)	21, 951, 987, 1056, 1067, 1210, 1228, 1253
HpyCH4III	ACNGT	1 cut(s)	829
HpyCH4IV	ACGT	1 cut(s)	771
HpyF10VI	GCNNNNNNNGC	8 cut(s)	111, 210, 338, 422, 491, 917, 926, 1516
HpyF3I	CTNAG	5 cut(s)	108, 182, 788, 903, 1008
HpySE526I	ACGT	1 cut(s)	771
Hsp92II	CATG	5 cut(s)	614, 864, 1267, 1547, 1596
HspAI	GCGC	5 cut(s)	103, 375, 423, 1201, 1203
KspI	CCGCGG	1 cut(s)	342
Kzo9I	GATC	2 cut(s)	317, 553
LguI	GCTCTTC	1 cut(s)	1029
LmnI	GCTCC	5 cut(s)	212, 588, 652, 1141, 1268
Lsp1109I	GCAGC	6 cut(s)	213, 359, 432, 506, 664, 1467
LweI	GCATC	6 cut(s)	670, 753, 763, 929, 1048, 1105
MaeI	CTAG	1 cut(s)	195
MaeII	ACGT	1 cut(s)	771
MaeIII	GTNAC	6 cut(s)	226, 260, 449, 535, 877, 1243
MalI	GATC	2 cut(s)	319, 555
MboI	GATC	2 cut(s)	317, 553
MboII	GAAGA	4 cut(s)	518, 823, 1034, 1046
MfeI	CAATTG	2 cut(s)	62, 1210
MhlI	GDGCHC	4 cut(s)	86, 156, 1108, 1301
MlsI	TGGCCA	1 cut(s)	568
MluNI	TGGCCA	1 cut(s)	568
MlyI	GAGTC	1 cut(s)	927
MmeI	TCCRAC	4 cut(s)	531, 786, 920, 1354
Mox20I	TGGCCA	1 cut(s)	568
Mph1103I	ATGCAT	2 cut(s)	6, 1120
MscI	TGGCCA	1 cut(s)	568
MseI	TTAA	5 cut(s)	381, 489, 501, 573, 842
MslI	CAYNNNNRTG	1 cut(s)	1250
Msp20I	TGGCCA	1 cut(s)	568
MspA1I	CMGCKG	3 cut(s)	204, 341, 760
MspI	CCGG	3 cut(s)	333, 456, 930
MspR9I	CCNGG	6 cut(s)	29, 457, 586, 656, 1229, 1302
MunI	CAATTG	2 cut(s)	62, 1210
Mva1269I	GAATGC	1 cut(s)	213
MvaI	CCWGG	5 cut(s)	29, 586, 656, 1229, 1302
MvnI	CGCG	2 cut(s)	341, 1203
MwoI	GCNNNNNNNGC	8 cut(s)	111, 210, 338, 422, 491, 917, 926, 1516
NciI	CCSGG	1 cut(s)	457
NdeI	CATATG	1 cut(s)	1387
NdeII	GATC	2 cut(s)	317, 553
NlaIII	CATG	5 cut(s)	614, 864, 1267, 1547, 1596
NmuCI	GTSAC	4 cut(s)	226, 260, 449, 1243
NsiI	ATGCAT	2 cut(s)	6, 1120
NspV	TTCGAA	1 cut(s)	94
PagI	TCATGA	1 cut(s)	1543
PasI	CCCWGGG	1 cut(s)	1301
PauI	GCGCGC	1 cut(s)	1201
PceI	AGGCCT	2 cut(s)	1332, 1519
PciSI	GCTCTTC	1 cut(s)	1029
PctI	GAATGC	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	1523
PkrI	GCNGC	9 cut(s)	203, 206, 340, 374, 422, 496, 679, 975, 1482
PleI	GAGTC	1 cut(s)	927
PpsI	GAGTC	1 cut(s)	927
Ppu21I	YACGTR	1 cut(s)	772
PpuMI	RGGWCCY	2 cut(s)	1082, 1156
Psp5II	RGGWCCY	2 cut(s)	1082, 1156
Psp6I	CCWGG	5 cut(s)	27, 584, 654, 1227, 1300
PspGI	CCWGG	5 cut(s)	27, 584, 654, 1227, 1300
PspOMI	GGGCCC	2 cut(s)	152, 1297
PspPI	GGNCC	9 cut(s)	112, 152, 153, 614, 1082, 1156, 1297, 1298, 1463
PspPPI	RGGWCCY	2 cut(s)	1082, 1156
PstI	CTGCAG	1 cut(s)	1485
PteI	GCGCGC	1 cut(s)	1201
RsaI	GTAC	5 cut(s)	774, 786, 1581, 1589, 1597
RsaNI	GTAC	5 cut(s)	773, 785, 1580, 1588, 1596
RseI	CAYNNNNRTG	1 cut(s)	1250
SacII	CCGCGG	1 cut(s)	342
SapI	GCTCTTC	1 cut(s)	1029
SaqAI	TTAA	5 cut(s)	381, 489, 501, 573, 842
SatI	GCNGC	9 cut(s)	202, 205, 339, 373, 421, 495, 678, 974, 1481
Sau3AI	GATC	2 cut(s)	317, 553
Sau96I	GGNCC	9 cut(s)	112, 152, 153, 614, 1082, 1156, 1297, 1298, 1463
ScaI	AGTACT	1 cut(s)	1589
SchI	GAGTC	1 cut(s)	927
ScrFI	CCNGG	6 cut(s)	29, 457, 586, 656, 1229, 1302
SduI	GDGCHC	4 cut(s)	86, 156, 1108, 1301
SfaNI	GCATC	6 cut(s)	670, 753, 763, 929, 1048, 1105
SfcI	CTRYAG	3 cut(s)	825, 1095, 1481
Sfr303I	CCGCGG	1 cut(s)	342
SfuI	TTCGAA	1 cut(s)	94
SgrBI	CCGCGG	1 cut(s)	342
SinI	GGWCC	4 cut(s)	614, 1082, 1156, 1463
SmiMI	CAYNNNNRTG	1 cut(s)	1250
SmlI	CTYRAG	2 cut(s)	79, 935
SmoI	CTYRAG	2 cut(s)	79, 935
SseBI	AGGCCT	2 cut(s)	1332, 1519
SspI	AATATT	1 cut(s)	1415
SspMI	CTAG	1 cut(s)	195
StuI	AGGCCT	2 cut(s)	1332, 1519
StyD4I	CCNGG	6 cut(s)	27, 455, 584, 654, 1227, 1300
StyI	CCWWGG	2 cut(s)	165, 563
TaaI	ACNGT	1 cut(s)	829
TaiI	ACGT	1 cut(s)	774
TaqI	TCGA	5 cut(s)	14, 94, 923, 1395, 1564
TatI	WGTACW	3 cut(s)	784, 1587, 1595
TauI	GCSGC	3 cut(s)	207, 341, 976
TfiI	GAWTC	1 cut(s)	1523
Tru1I	TTAA	5 cut(s)	381, 489, 501, 573, 842
Tru9I	TTAA	5 cut(s)	381, 489, 501, 573, 842
TscAI	CASTG	2 cut(s)	178, 754
TseFI	GTSAC	4 cut(s)	226, 260, 449, 1243
TseI	GCWGC	6 cut(s)	201, 372, 420, 494, 677, 1480
Tsp45I	GTSAC	4 cut(s)	226, 260, 449, 1243
TspDTI	ATGAA	6 cut(s)	519, 534, 737, 857, 1143, 1532
TspRI	CASTG	2 cut(s)	178, 754
VpaK11BI	GGWCC	4 cut(s)	614, 1082, 1156, 1463
XapI	RAATTY	2 cut(s)	266, 509
XspI	CTAG	1 cut(s)	195
ZrmI	AGTACT	1 cut(s)	1589
Zsp2I	ATGCAT	2 cut(s)	6, 1120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.