Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000412.1

Orthogroup ID

OG0005253

Physical Location & Seq

Genomic Coordinates Reverse (-)

24741 .. 26507

Gene Structure 1767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000412.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

atggaggagttcccctctcatctatcaaatgggaagtgcatgctcacaatagaagcaaaggacaatgaaaagtccatcgaatctctagatagaggactcacagagtatggttgtccgcattatcggcgaaggtgccgcattagggctccttgttgcaatgagatttttgattgtcgccattgtcataatgaagcaaagaacaatattaatgttgaaccaaaactcagacatgacataccacggcatcaagtcgaacaggtgatatgttcactttgtggcactgagcaagaggttcaacaagtctgtgtcaactgtggtgtatgcatgggcaaatacttctgtgagacatgcaagctatttgatgatgatatatcgaagaaacagtaccattgcgatggctgtgggatatgcagaattggggggcgtgataatttctttcattgctacaaatgtggtggcggttccaggcgacgacggcggcgcggagctggccggagggaggccggaggcgtcccagacctcttctgggcggcgttcgaggtcggaggaggtcgggcttgccggtttctgggcagccacctcacctgcagttgcaggttctctgcagcactgcagaccctctttgctccaagtcagtttgtgatatgtccaaggtatgggagaaatatgatatggagatcgcagctacaccaatgcccgaaccatatcaaaataaacaagtttcaattctgtgcaacgactgtgggaagagctcacaagtgcagtttcacattgtggcgcagaaatgctcaaattgcaaatcttacaatactcgccaaacaagaggctgagcaagtggcatggttgcaccacatttactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0002039 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

ko04115 ko04120 ko05162 map04115 map04120 map05162

Pfam Domains

Protein Families

zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

286

Amino Acids

32.79

Weight (kDa)

8.95

Isoelectric Point (pI)

65.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25560 AT5G25560 AT5G25560 AT5G25560 AT5G25560 AT5G25560
fragaria_vesca	FvH4_2g30250 FvH4_2g30250 FvH4_2g30250
malus_domestica	MD08G1135100.v1.1 MD15G1113900.v1.1
prunus_persica	Prupe.1G465000_v2.0.a1
pyrus_communis	pycom08g11400 pycom15g10220
rosa_chinensis	RchiOBHm_Chr6g0312621
rosa_laevigata	RLG00000010310
rosa_multiflora	Rmu_co8415537.1_g000003 Rmu_sc0002859.1_g000008 Rmu_ssc0000412.1_g000002
rosa_roxburghii	Rroxscaffold_7G00156640
rosa_rugosa	Rorug06G0397500 Rorug06G0397600 Rorug06G0397700 Rorug06G0397800
rosa_samantha	Rh6AG515000 Rh6BG525000 Rh6CG530400 Rh6DG517100
rosa_wichuraiana	Rw6G044740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	593
Acc36I	ACCTGC	2 cut(s)	585, 593
AccB1I	GGYRCC	1 cut(s)	132
AccB7I	CCANNNNNTGG	1 cut(s)	656
AccII	CGCG	1 cut(s)	483
AciI	CCGC	6 cut(s)	116, 136, 459, 478, 483, 530
AcoI	YGGCCR	1 cut(s)	490
AcyI	GRCGYC	1 cut(s)	510
AdeI	CACNNNGTG	2 cut(s)	275, 774
AfaI	GTAC	1 cut(s)	386
AfiI	CCNNNNNNNGG	5 cut(s)	142, 499, 526, 568, 656
AgsI	TTSAA	3 cut(s)	215, 296, 725
AjnI	CCWGG	1 cut(s)	464
AluBI	AGCT	4 cut(s)	355, 488, 685, 752
AluI	AGCT	4 cut(s)	355, 488, 685, 752
Alw21I	GWGCWC	1 cut(s)	754
Alw26I	GTCTC	1 cut(s)	338
AoxI	GGCC	2 cut(s)	490, 501
ApeKI	GCWGC	3 cut(s)	573, 605, 682
AseI	ATTAAT	1 cut(s)	207
AspLEI	GCGC	2 cut(s)	483, 780
AsuHPI	GGTGA	2 cut(s)	271, 574
BanI	GGYRCC	1 cut(s)	132
BanII	GRGCYC	2 cut(s)	148, 754
BarI	GAAGNNNNNNTAC	2 cut(s)	368, 400
Bbv12I	GWGCWC	1 cut(s)	754
BbvI	GCAGC	3 cut(s)	585, 617, 694
BccI	CCATC	2 cut(s)	83, 389
BceAI	ACGGC	2 cut(s)	257, 491
BciT130I	CCWGG	1 cut(s)	466
BcoDI	GTCTC	1 cut(s)	338
BfaI	CTAG	1 cut(s)	86
BfmI	CTRYAG	3 cut(s)	586, 603, 611
BfuAI	ACCTGC	2 cut(s)	585, 593
BisI	GCNGC	6 cut(s)	136, 479, 531, 574, 606, 683
BlpI	GCTNAGC	1 cut(s)	828
BlsI	GCNGC	6 cut(s)	137, 480, 532, 575, 607, 684
Bme1390I	CCNGG	1 cut(s)	466
BmiI	GGNNCC	3 cut(s)	134, 147, 463
BmrFI	CCNGG	1 cut(s)	466
BmsI	GCATC	1 cut(s)	253
BplI	GAGNNNNNCTC	1 cut(s)	31
Bpu1102I	GCTNAGC	1 cut(s)	828
BsaHI	GRCGYC	1 cut(s)	510
BsaJI	CCNNGG	2 cut(s)	239, 650
Bsc4I	CCNNNNNNNGG	5 cut(s)	142, 499, 526, 568, 656
Bse118I	RCCGGY	1 cut(s)	561
Bse3DI	GCAATG	3 cut(s)	163, 388, 439
BseBI	CCWGG	1 cut(s)	466
BseDI	CCNNGG	2 cut(s)	239, 650
BseLI	CCNNNNNNNGG	5 cut(s)	142, 499, 526, 568, 656
BseMI	GCAATG	3 cut(s)	163, 388, 439
BseMII	CTCAG	3 cut(s)	238, 273, 819
BseRI	GAGGAG	2 cut(s)	20, 561
BseXI	GCAGC	3 cut(s)	585, 617, 694
BsgI	GTGCAG	1 cut(s)	781
Bsh1236I	CGCG	1 cut(s)	483
BshFI	GGCC	2 cut(s)	492, 503
BshNI	GGYRCC	1 cut(s)	132
BsiHKAI	GWGCWC	1 cut(s)	754
BsiSI	CCGG	3 cut(s)	493, 504, 562
BslFI	GGGAC	1 cut(s)	497
BslI	CCNNNNNNNGG	5 cut(s)	142, 499, 526, 568, 656
BsmAI	GTCTC	1 cut(s)	338
BsmFI	GGGAC	1 cut(s)	497
BsnI	GGCC	2 cut(s)	492, 503
Bsp1286I	GDGCHC	2 cut(s)	148, 754
Bsp143I	GATC	1 cut(s)	677
Bsp1720I	GCTNAGC	1 cut(s)	828
BspACI	CCGC	6 cut(s)	116, 136, 459, 478, 483, 530
BspANI	GGCC	2 cut(s)	492, 503
BspCNI	CTCAG	3 cut(s)	237, 274, 820
BspFNI	CGCG	1 cut(s)	483
BspLI	GGNNCC	3 cut(s)	134, 147, 463
BspMAI	CTGCAG	3 cut(s)	590, 607, 615
BspMI	ACCTGC	2 cut(s)	585, 593
BspQI	GCTCTTC	1 cut(s)	742
BspT107I	GGYRCC	1 cut(s)	132
BsrDI	GCAATG	3 cut(s)	163, 388, 439
BsrFI	RCCGGY	1 cut(s)	561
BssAI	RCCGGY	1 cut(s)	561
BssECI	CCNNGG	2 cut(s)	239, 650
BssMI	GATC	1 cut(s)	677
BssNI	GRCGYC	1 cut(s)	510
BssT1I	CCWWGG	1 cut(s)	650
Bst2UI	CCWGG	1 cut(s)	466
Bst4CI	ACNGT	3 cut(s)	314, 384, 742
Bst6I	CTCTTC	2 cut(s)	527, 742
BstACI	GRCGYC	1 cut(s)	510
BstC8I	GCNNGC	4 cut(s)	41, 353, 490, 559
BstDEI	CTNAG	3 cut(s)	224, 282, 828
BstDSI	CCRYGG	1 cut(s)	239
BstFNI	CGCG	1 cut(s)	483
BstHHI	GCGC	2 cut(s)	483, 780
BstKTI	GATC	1 cut(s)	680
BstMAI	GTCTC	1 cut(s)	338
BstMBI	GATC	1 cut(s)	677
BstMWI	GCNNNNNNNGC	4 cut(s)	124, 475, 489, 794
BstNI	CCWGG	1 cut(s)	466
BstNSI	RCATGY	2 cut(s)	43, 351
BstSCI	CCNGG	1 cut(s)	464
BstSFI	CTRYAG	3 cut(s)	586, 603, 611
BstUI	CGCG	1 cut(s)	483
BstV1I	GCAGC	3 cut(s)	585, 617, 694
BstXI	CCANNNNNNTGG	1 cut(s)	395
BsuRI	GGCC	2 cut(s)	492, 503
BtgI	CCRYGG	1 cut(s)	239
BtgZI	GCGATG	1 cut(s)	408
BtsI	GCAGTG	1 cut(s)	608
BtsIMutI	CAGTG	2 cut(s)	279, 608
BveI	ACCTGC	2 cut(s)	585, 593
Cac8I	GCNNGC	4 cut(s)	41, 353, 490, 559
CfoI	GCGC	2 cut(s)	483, 780
Cfr10I	RCCGGY	1 cut(s)	561
CseI	GACGC	1 cut(s)	499
Csp6I	GTAC	1 cut(s)	385
CspCI	CAANNNNNGTGG	4 cut(s)	436, 471, 723, 758
CviAII	CATG	5 cut(s)	40, 230, 325, 348, 840
CviQI	GTAC	1 cut(s)	385
DdeI	CTNAG	3 cut(s)	224, 282, 828
DpnI	GATC	1 cut(s)	679
DpnII	GATC	1 cut(s)	677
DraIII	CACNNNGTG	2 cut(s)	275, 774
EaeI	YGGCCR	1 cut(s)	490
Eam1104I	CTCTTC	2 cut(s)	527, 742
EarI	CTCTTC	2 cut(s)	527, 742
Ecl136II	GAGCTC	1 cut(s)	752
Eco130I	CCWWGG	1 cut(s)	650
Eco24I	GRGCYC	2 cut(s)	148, 754
Eco53kI	GAGCTC	1 cut(s)	752
EcoICRI	GAGCTC	1 cut(s)	752
EcoRII	CCWGG	1 cut(s)	464
EcoT14I	CCWWGG	1 cut(s)	650
EcoT22I	ATGCAT	1 cut(s)	326
EcoT38I	GRGCYC	2 cut(s)	148, 754
ErhI	CCWWGG	1 cut(s)	650
FaeI	CATG	5 cut(s)	43, 233, 328, 351, 843
FaqI	GGGAC	1 cut(s)	497
FatI	CATG	5 cut(s)	39, 229, 324, 347, 839
Fnu4HI	GCNGC	6 cut(s)	136, 479, 531, 574, 606, 683
FriOI	GRGCYC	2 cut(s)	148, 754
Fsp4HI	GCNGC	6 cut(s)	136, 479, 531, 574, 606, 683
FspBI	CTAG	1 cut(s)	86
GlaI	GCGC	2 cut(s)	482, 779
GluI	GCNGC	6 cut(s)	136, 479, 531, 574, 606, 683
HaeIII	GGCC	2 cut(s)	492, 503
HapII	CCGG	3 cut(s)	493, 504, 562
HgaI	GACGC	1 cut(s)	499
HhaI	GCGC	2 cut(s)	483, 780
Hin1I	GRCGYC	1 cut(s)	510
Hin1II	CATG	5 cut(s)	43, 233, 328, 351, 843
Hin6I	GCGC	2 cut(s)	481, 778
HinP1I	GCGC	2 cut(s)	481, 778
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HinfI	GANTC	2 cut(s)	80, 96
HpaII	CCGG	3 cut(s)	493, 504, 562
HphI	GGTGA	2 cut(s)	271, 574
Hpy166II	GTNNAC	2 cut(s)	269, 310
Hpy188I	TCNGA	2 cut(s)	227, 545
Hpy188III	TCNNGA	1 cut(s)	86
Hpy8I	GTNNAC	2 cut(s)	269, 310
Hpy99I	CGWCG	2 cut(s)	474, 477
HpyAV	CCTTC	1 cut(s)	123
HpyCH4III	ACNGT	3 cut(s)	314, 384, 742
HpyF10VI	GCNNNNNNNGC	4 cut(s)	124, 475, 489, 794
HpyF3I	CTNAG	3 cut(s)	224, 282, 828
Hsp92I	GRCGYC	1 cut(s)	510
Hsp92II	CATG	5 cut(s)	43, 233, 328, 351, 843
HspAI	GCGC	2 cut(s)	481, 778
Kzo9I	GATC	1 cut(s)	677
LguI	GCTCTTC	1 cut(s)	742
LmnI	GCTCC	3 cut(s)	151, 485, 631
Lsp1109I	GCAGC	3 cut(s)	585, 617, 694
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	1 cut(s)	86
MalI	GATC	1 cut(s)	679
MboI	GATC	1 cut(s)	677
MboII	GAAGA	3 cut(s)	388, 514, 759
MhlI	GDGCHC	2 cut(s)	148, 754
MluCI	AATT	4 cut(s)	414, 430, 725, 792
MlyI	GAGTC	1 cut(s)	90
MmeI	TCCRAC	1 cut(s)	523
Mph1103I	ATGCAT	1 cut(s)	326
MseI	TTAA	1 cut(s)	207
MslI	CAYNNNNRTG	1 cut(s)	393
MspI	CCGG	3 cut(s)	493, 504, 562
MspR9I	CCNGG	1 cut(s)	466
MvaI	CCWGG	1 cut(s)	466
MvnI	CGCG	1 cut(s)	483
MwoI	GCNNNNNNNGC	4 cut(s)	124, 475, 489, 794
NdeII	GATC	1 cut(s)	677
NlaIII	CATG	5 cut(s)	43, 233, 328, 351, 843
NlaIV	GGNNCC	3 cut(s)	134, 147, 463
NsiI	ATGCAT	1 cut(s)	326
NspI	RCATGY	2 cut(s)	43, 351
PaeI	GCATGC	1 cut(s)	43
PaqCI	CACCTGC	1 cut(s)	593
PciSI	GCTCTTC	1 cut(s)	742
PfeI	GAWTC	1 cut(s)	80
PflMI	CCANNNNNTGG	1 cut(s)	656
PkrI	GCNGC	6 cut(s)	137, 480, 532, 575, 607, 684
PleI	GAGTC	1 cut(s)	90
PpsI	GAGTC	1 cut(s)	90
PshBI	ATTAAT	1 cut(s)	207
Psp124BI	GAGCTC	1 cut(s)	754
Psp6I	CCWGG	1 cut(s)	464
PspGI	CCWGG	1 cut(s)	464
PspN4I	GGNNCC	3 cut(s)	134, 147, 463
PstI	CTGCAG	3 cut(s)	590, 607, 615
RsaI	GTAC	1 cut(s)	386
RsaNI	GTAC	1 cut(s)	385
RseI	CAYNNNNRTG	1 cut(s)	393
SacI	GAGCTC	1 cut(s)	754
SapI	GCTCTTC	1 cut(s)	742
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	6 cut(s)	136, 479, 531, 574, 606, 683
Sau3AI	GATC	1 cut(s)	677
SchI	GAGTC	1 cut(s)	90
ScrFI	CCNGG	1 cut(s)	466
SduI	GDGCHC	2 cut(s)	148, 754
SfaNI	GCATC	1 cut(s)	253
SfcI	CTRYAG	3 cut(s)	586, 603, 611
SmiMI	CAYNNNNRTG	1 cut(s)	393
SphI	GCATGC	1 cut(s)	43
Sse9I	AATT	4 cut(s)	414, 430, 725, 792
SsiI	CCGC	6 cut(s)	116, 136, 459, 478, 483, 530
SspI	AATATT	1 cut(s)	205
SspMI	CTAG	1 cut(s)	86
SstI	GAGCTC	1 cut(s)	754
StyD4I	CCNGG	1 cut(s)	464
StyI	CCWWGG	1 cut(s)	650
TaaI	ACNGT	3 cut(s)	314, 384, 742
TaqI	TCGA	4 cut(s)	78, 252, 374, 537
TasI	AATT	4 cut(s)	414, 430, 725, 792
TauI	GCSGC	3 cut(s)	138, 481, 533
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	2 cut(s)	286, 615
TseI	GCWGC	3 cut(s)	573, 605, 682
TspDTI	ATGAA	3 cut(s)	81, 204, 428
TspRI	CASTG	2 cut(s)	286, 615
Van91I	CCANNNNNTGG	1 cut(s)	656
VspI	ATTAAT	1 cut(s)	207
XbaI	TCTAGA	1 cut(s)	85
XceI	RCATGY	2 cut(s)	43, 351
XcmI	CCANNNNNNNNNTGG	1 cut(s)	522
XspI	CTAG	1 cut(s)	86
Zsp2I	ATGCAT	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.