Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0005253

Physical Location & Seq

Genomic Coordinates Reverse (-)

9647456 .. 9649566

Gene Structure 2111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g11400.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGCAAGATATAATGGTTAGGCAGAACATAATGGGAGATGCCCACTGTAATCTATCAAATGGCGAGTATAAACTCAAACTTGAATCGAAGGTTACTGGGGAGGCCACTGAATTGCTAGAGAAAGGATACATGCAGTATGGATGTCCACACTACCAGCGAAGGTGCAGTATTAGAGCTCCTTGCTGCAATGAGATTTTTGATTGTCGCCATTGTCATAACGAAGCTAAGAATGATATTAGTGTTGATCAGAAGCATAGACATGACATGCCGCGTCATCAAGTGAAACAGGTGATATGTTCACTTTGCGACACTGAGCAAGAGGTTCAACAAGTTTGTGTCAACTGTGGTGTATGTATGGGGAAATACTTCTGTGAGACTTGCAGGCTATTTGATGATGATGTATCTAAGAAACAGTACCATTGCAATGGCTGTGGGATTTGCAGAATTGGGGGGTGCGAGAATTTCTTTCACTGCTACAAGTGTGGTTGCTGCTACTCAACGCTGTTGAAGAACAGCCACCCCTGTGTGGAGGGAGCAATGCATCATGACTGCCCTGTTTGCTTTGAGTTCTTATTCGAAACAAGAAATGATGTTACCGTCATGCCATGTGGGCACACAATTCACAAGAATTGCTTAAAAGAGATGAGGGACCATTATCAATATGCTTGCCCTCTTTGCTCCAAGTCAGTTTGCGATATGTCTAAGGTATGGGAGAAATATGACATGGAGATTGCAGCTCAACCGATGCCTGAACCCTATCAAAACAAATTGGTTTCGATCCTCTGCAACGACTGCGGGAAAAGGTCACAGGTGCAGTACCATGTTGTGGCCCGGAAATGTCTGAACTGTAAATCTTACAACACTCGCCAAACGAGAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0002039 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

ko04115 ko04120 ko05162 map04115 map04120 map05162

Pfam Domains

Protein Families

zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

294

Amino Acids

33.82

Weight (kDa)

7.63

Isoelectric Point (pI)

44.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25560 AT5G25560 AT5G25560 AT5G25560 AT5G25560 AT5G25560
fragaria_vesca	FvH4_2g30250 FvH4_2g30250 FvH4_2g30250
malus_domestica	MD08G1135100.v1.1 MD15G1113900.v1.1
prunus_persica	Prupe.1G465000_v2.0.a1
pyrus_communis	pycom08g11400 pycom15g10220
rosa_chinensis	RchiOBHm_Chr6g0312621
rosa_laevigata	RLG00000010310
rosa_multiflora	Rmu_co8415537.1_g000003 Rmu_sc0002859.1_g000008 Rmu_ssc0000412.1_g000002
rosa_roxburghii	Rroxscaffold_7G00156640
rosa_rugosa	Rorug06G0397500 Rorug06G0397600 Rorug06G0397700 Rorug06G0397800
rosa_samantha	Rh6AG515000 Rh6BG525000 Rh6CG530400 Rh6DG517100
rosa_wichuraiana	Rw6G044740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	826
AccII	CGCG	1 cut(s)	271
AciI	CCGC	2 cut(s)	269, 795
AclWI	GGATC	1 cut(s)	772
AcsI	RAATTY	1 cut(s)	460
AfaI	GTAC	2 cut(s)	416, 818
AfiI	CCNNNNNNNGG	2 cut(s)	526, 826
AgsI	TTSAA	3 cut(s)	83, 326, 508
AleI	CACNNNNGTG	1 cut(s)	522
AluBI	AGCT	3 cut(s)	176, 224, 737
AluI	AGCT	3 cut(s)	176, 224, 737
Alw21I	GWGCWC	1 cut(s)	178
Alw26I	GTCTC	1 cut(s)	368
AlwI	GGATC	1 cut(s)	772
AoxI	GGCC	2 cut(s)	102, 828
ApeKI	GCWGC	3 cut(s)	183, 489, 734
ApoI	RAATTY	1 cut(s)	460
Asp700I	GAANNNNTTC	1 cut(s)	365
AspS9I	GGNCC	2 cut(s)	649, 829
AsuC2I	CCSGG	1 cut(s)	832
AsuHPI	GGTGA	1 cut(s)	301
AsuII	TTCGAA	1 cut(s)	576
AvaII	GGWCC	1 cut(s)	649
BaeGI	GKGCMC	1 cut(s)	615
BanII	GRGCYC	1 cut(s)	178
Bbv12I	GWGCWC	1 cut(s)	178
BbvI	GCAGC	3 cut(s)	170, 476, 746
BciVI	GTATCC	1 cut(s)	119
BclI	TGATCA	1 cut(s)	244
BcnI	CCSGG	1 cut(s)	832
BcoDI	GTCTC	1 cut(s)	368
BfaI	CTAG	1 cut(s)	116
BfuI	GTATCC	1 cut(s)	119
BglI	GCCNNNNNGGC	1 cut(s)	610
BisI	GCNGC	4 cut(s)	184, 269, 490, 735
BlsI	GCNGC	4 cut(s)	185, 270, 491, 736
Bme1390I	CCNGG	1 cut(s)	832
Bme18I	GGWCC	1 cut(s)	649
BmgT120I	GGNCC	2 cut(s)	649, 829
BmiI	GGNNCC	1 cut(s)	650
BmrFI	CCNGG	1 cut(s)	832
BmrI	ACTGGG	1 cut(s)	105
BmsI	GCATC	3 cut(s)	28, 550, 735
BmuI	ACTGGG	1 cut(s)	105
Bpu14I	TTCGAA	1 cut(s)	576
BpuMI	CCSGG	1 cut(s)	832
Bsc4I	CCNNNNNNNGG	2 cut(s)	526, 826
Bse1I	ACTGG	1 cut(s)	100
Bse3DI	GCAATG	4 cut(s)	193, 418, 430, 543
BseGI	GGATG	1 cut(s)	146
BseLI	CCNNNNNNNGG	2 cut(s)	526, 826
BseMI	GCAATG	4 cut(s)	193, 418, 430, 543
BseMII	CTCAG	1 cut(s)	303
BseNI	ACTGG	1 cut(s)	100
BseSI	GKGCMC	1 cut(s)	615
BseXI	GCAGC	3 cut(s)	170, 476, 746
BsgI	GTGCAG	2 cut(s)	184, 833
Bsh1236I	CGCG	1 cut(s)	271
BshFI	GGCC	2 cut(s)	104, 830
BsiHKAI	GWGCWC	1 cut(s)	178
BsiSI	CCGG	1 cut(s)	832
BslFI	GGGAC	1 cut(s)	662
BslI	CCNNNNNNNGG	2 cut(s)	526, 826
BsmAI	GTCTC	1 cut(s)	368
BsmFI	GGGAC	1 cut(s)	662
BsnI	GGCC	2 cut(s)	104, 830
Bsp119I	TTCGAA	1 cut(s)	576
Bsp1286I	GDGCHC	2 cut(s)	178, 615
Bsp143I	GATC	2 cut(s)	244, 777
BspACI	CCGC	2 cut(s)	269, 795
BspANI	GGCC	2 cut(s)	104, 830
BspCNI	CTCAG	1 cut(s)	304
BspFNI	CGCG	1 cut(s)	271
BspHI	TCATGA	1 cut(s)	544
BspLI	GGNNCC	1 cut(s)	650
BspPI	GGATC	1 cut(s)	772
BspT104I	TTCGAA	1 cut(s)	576
BsrDI	GCAATG	4 cut(s)	193, 418, 430, 543
BsrI	ACTGG	1 cut(s)	100
BssMI	GATC	2 cut(s)	244, 777
Bst4CI	ACNGT	5 cut(s)	47, 344, 414, 598, 848
BstAPI	GCANNNNNTGC	1 cut(s)	792
BstBI	TTCGAA	1 cut(s)	576
BstC8I	GCNNGC	2 cut(s)	383, 667
BstDEI	CTNAG	4 cut(s)	225, 312, 405, 702
BstF5I	GGATG	1 cut(s)	146
BstFNI	CGCG	1 cut(s)	271
BstKTI	GATC	2 cut(s)	247, 780
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	2 cut(s)	244, 777
BstMWI	GCNNNNNNNGC	4 cut(s)	558, 610, 675, 792
BstNSI	RCATGY	2 cut(s)	133, 268
BstSCI	CCNGG	1 cut(s)	830
BstSLI	GKGCMC	1 cut(s)	615
BstUI	CGCG	1 cut(s)	271
BstV1I	GCAGC	3 cut(s)	170, 476, 746
BstXI	CCANNNNNNTGG	1 cut(s)	425
BsuI	GTATCC	1 cut(s)	119
BsuRI	GGCC	2 cut(s)	104, 830
BtsCI	GGATG	1 cut(s)	146
BtsI	GCAGTG	1 cut(s)	469
BtsIMutI	CAGTG	4 cut(s)	43, 105, 309, 469
Cac8I	GCNNGC	2 cut(s)	383, 667
CciI	TCATGA	1 cut(s)	544
Cfr13I	GGNCC	2 cut(s)	649, 829
CseI	GACGC	1 cut(s)	260
Csp6I	GTAC	2 cut(s)	415, 817
CspCI	CAANNNNNGTGG	2 cut(s)	412, 447
CviAII	CATG	8 cut(s)	130, 260, 265, 545, 601, 606, 724, 821
CviJI	RGCY	9 cut(s)	104, 176, 224, 385, 429, 516, 737, 830, 879
CviKI_1	RGCY	9 cut(s)	104, 176, 224, 385, 429, 516, 737, 830, 879
CviQI	GTAC	2 cut(s)	415, 817
DdeI	CTNAG	4 cut(s)	225, 312, 405, 702
DpnI	GATC	2 cut(s)	246, 779
DpnII	GATC	2 cut(s)	244, 777
Ecl136II	GAGCTC	1 cut(s)	176
Eco24I	GRGCYC	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	649
Eco53kI	GAGCTC	1 cut(s)	176
EcoICRI	GAGCTC	1 cut(s)	176
EcoT22I	ATGCAT	1 cut(s)	543
EcoT38I	GRGCYC	1 cut(s)	178
FaeI	CATG	8 cut(s)	133, 263, 268, 548, 604, 609, 727, 824
FalI	AAGNNNNNCTT	2 cut(s)	617, 649
FaqI	GGGAC	1 cut(s)	662
FatI	CATG	8 cut(s)	129, 259, 264, 544, 600, 605, 723, 820
FauI	CCCGC	1 cut(s)	788
FbaI	TGATCA	1 cut(s)	244
Fnu4HI	GCNGC	4 cut(s)	184, 269, 490, 735
FokI	GGATG	1 cut(s)	153
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	4 cut(s)	184, 269, 490, 735
FspBI	CTAG	1 cut(s)	116
GluI	GCNGC	4 cut(s)	184, 269, 490, 735
HaeIII	GGCC	2 cut(s)	104, 830
HapII	CCGG	1 cut(s)	832
HgaI	GACGC	1 cut(s)	260
Hin1II	CATG	8 cut(s)	133, 263, 268, 548, 604, 609, 727, 824
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HinfI	GANTC	1 cut(s)	83
HpaII	CCGG	1 cut(s)	832
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	3 cut(s)	146, 299, 340
Hpy188I	TCNGA	2 cut(s)	249, 843
Hpy188III	TCNNGA	1 cut(s)	545
Hpy8I	GTNNAC	3 cut(s)	146, 299, 340
HpyAV	CCTTC	2 cut(s)	82, 153
HpyCH4III	ACNGT	5 cut(s)	47, 344, 414, 598, 848
HpyF10VI	GCNNNNNNNGC	4 cut(s)	558, 610, 675, 792
HpyF3I	CTNAG	4 cut(s)	225, 312, 405, 702
Hsp92II	CATG	8 cut(s)	133, 263, 268, 548, 604, 609, 727, 824
Ksp22I	TGATCA	1 cut(s)	244
Kzo9I	GATC	2 cut(s)	244, 777
LmnI	GCTCC	3 cut(s)	181, 533, 683
LpnPI	CCDG	9 cut(s)	81, 167, 272, 367, 535, 567, 762, 794, 845
Lsp1109I	GCAGC	3 cut(s)	170, 476, 746
LweI	GCATC	3 cut(s)	28, 550, 735
MaeI	CTAG	1 cut(s)	116
MaeIII	GTNAC	3 cut(s)	91, 592, 804
MalI	GATC	2 cut(s)	246, 779
MboI	GATC	2 cut(s)	244, 777
MboII	GAAGA	1 cut(s)	520
MhlI	GDGCHC	2 cut(s)	178, 615
MluCI	AATT	6 cut(s)	110, 444, 460, 618, 628, 767
MnlI	CCTC	7 cut(s)	94, 313, 523, 639, 681, 791, 869
Mph1103I	ATGCAT	1 cut(s)	543
MroXI	GAANNNNTTC	1 cut(s)	365
MseI	TTAA	1 cut(s)	635
MslI	CAYNNNNRTG	3 cut(s)	258, 423, 522
MspI	CCGG	1 cut(s)	832
MspR9I	CCNGG	1 cut(s)	832
MvnI	CGCG	1 cut(s)	271
MwoI	GCNNNNNNNGC	4 cut(s)	558, 610, 675, 792
NciI	CCSGG	1 cut(s)	832
NdeII	GATC	2 cut(s)	244, 777
NlaIII	CATG	8 cut(s)	133, 263, 268, 548, 604, 609, 727, 824
NlaIV	GGNNCC	1 cut(s)	650
NmuCI	GTSAC	1 cut(s)	804
NsiI	ATGCAT	1 cut(s)	543
NspI	RCATGY	2 cut(s)	133, 268
NspV	TTCGAA	1 cut(s)	576
OliI	CACNNNNGTG	1 cut(s)	522
PagI	TCATGA	1 cut(s)	544
PdmI	GAANNNNTTC	1 cut(s)	365
PfeI	GAWTC	1 cut(s)	83
PflMI	CCANNNNNTGG	1 cut(s)	826
PkrI	GCNGC	4 cut(s)	185, 270, 491, 736
Psp124BI	GAGCTC	1 cut(s)	178
PspN4I	GGNNCC	1 cut(s)	650
PspPI	GGNCC	2 cut(s)	649, 829
RsaI	GTAC	2 cut(s)	416, 818
RsaNI	GTAC	2 cut(s)	415, 817
RseI	CAYNNNNRTG	3 cut(s)	258, 423, 522
SacI	GAGCTC	1 cut(s)	178
SaqAI	TTAA	1 cut(s)	635
SatI	GCNGC	4 cut(s)	184, 269, 490, 735
Sau3AI	GATC	2 cut(s)	244, 777
Sau96I	GGNCC	2 cut(s)	649, 829
ScrFI	CCNGG	1 cut(s)	832
SduI	GDGCHC	2 cut(s)	178, 615
SfaNI	GCATC	3 cut(s)	28, 550, 735
SfuI	TTCGAA	1 cut(s)	576
SinI	GGWCC	1 cut(s)	649
SmiMI	CAYNNNNRTG	3 cut(s)	258, 423, 522
Sse9I	AATT	6 cut(s)	110, 444, 460, 618, 628, 767
SsiI	CCGC	2 cut(s)	269, 795
SspMI	CTAG	1 cut(s)	116
SstI	GAGCTC	1 cut(s)	178
StyD4I	CCNGG	1 cut(s)	830
TaaI	ACNGT	5 cut(s)	47, 344, 414, 598, 848
TaqI	TCGA	3 cut(s)	86, 576, 776
TasI	AATT	6 cut(s)	110, 444, 460, 618, 628, 767
TauI	GCSGC	1 cut(s)	271
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	1 cut(s)	635
Tru9I	TTAA	1 cut(s)	635
TscAI	CASTG	4 cut(s)	50, 112, 316, 476
TseFI	GTSAC	1 cut(s)	804
TseI	GCWGC	3 cut(s)	183, 489, 734
Tsp45I	GTSAC	1 cut(s)	804
TspRI	CASTG	4 cut(s)	50, 112, 316, 476
Van91I	CCANNNNNTGG	1 cut(s)	826
VpaK11BI	GGWCC	1 cut(s)	649
XapI	RAATTY	1 cut(s)	460
XceI	RCATGY	2 cut(s)	133, 268
XmnI	GAANNNNTTC	1 cut(s)	365
XspI	CTAG	1 cut(s)	116
Zsp2I	ATGCAT	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.