Rorug06G0397800

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0005253
Physical Location & Seq
Forward (+)
54352624 .. 54354000
1377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0397800.1

Sequence Viewer

Length: 543 bp
ATGGAGAAGGGAAAGGGAGTTATGGGAGCCGGTCGAAGATGGGCCGTTGACTTGACGGACAACTCAACCTCTCCTTGTTCCCGCGACGTCCCTGACCCTCCTGGCTTCTCCAGGGCCTCCTCCGATCAGGACGATTCAACTGTGAGTCGCCAGAAGAAGGAAGCTGAATCGACATGGAAATCTCAGAAAGCTTGGGAAGTTGCTCAGGCCCCTTTTAAGAATTTGTTAATGATGGGCTTCATGATGTGGATGGCTGGCAGCACTGTCCATCTGTTCAGCATTGGAATTACATTTTCTGCTCTCTGGCAGCCCATAAGTGCCTTACAAGGTGTAGGAAAGGTTTTTGAGCCCTACAAGGACAGCAAAGTGGATCTTCTTGGCCCAAAGTTGCTCTTCATCGCCCTTAATTTGGGGGGTTTGGCACTTGGTGTCTGGAAGCTTAACACATTGGGGTTGCTTCCTACACATGCATCCGACTGGGTTTCATCCTTACCCCCTGCTCAGGAGGTTGAGTATTCTGGTGGTGGCATTCCTCTCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0002039 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

180

Amino Acids

19.51

Weight (kDa)

6.83

Isoelectric Point (pI)

38.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMC4 PF06417 52 - 164 3.9e-39 ER membrane protein complex subunit 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 90
AccII CGCG 1 cut(s) 84
AciI CCGC 1 cut(s) 82
AclWI GGATC 1 cut(s) 378
AcsI RAATTY 1 cut(s) 220
AcyI GRCGYC 1 cut(s) 87
AdeI CACNNNGTG 1 cut(s) 428
AfiI CCNNNNNNNGG 3 cut(s) 157, 409, 502
AgsI TTSAA 1 cut(s) 138
AjnI CCWGG 2 cut(s) 100, 110
AluBI AGCT 3 cut(s) 164, 191, 439
AluI AGCT 3 cut(s) 164, 191, 439
AlwI GGATC 1 cut(s) 378
AoxI GGCC 4 cut(s) 42, 114, 207, 379
ApeKI GCWGC 2 cut(s) 258, 307
ApoI RAATTY 1 cut(s) 220
AspS9I GGNCC 4 cut(s) 42, 114, 208, 380
BanII GRGCYC 1 cut(s) 351
BbvI GCAGC 2 cut(s) 270, 319
BccI CCATC 4 cut(s) 33, 226, 244, 276
BceAI ACGGC 1 cut(s) 29
BciT130I CCWGG 2 cut(s) 102, 112
BisI GCNGC 2 cut(s) 259, 308
BlsI GCNGC 2 cut(s) 260, 309
Bme1390I CCNGG 2 cut(s) 102, 112
BmgT120I GGNCC 4 cut(s) 42, 114, 208, 380
BmiI GGNNCC 2 cut(s) 28, 210
BmrFI CCNGG 2 cut(s) 102, 112
BmrI ACTGGG 1 cut(s) 487
BmsI GCATC 1 cut(s) 479
BmuI ACTGGG 1 cut(s) 487
BpmI CTGGAG 1 cut(s) 94
Bpu10I CCTNAGC 2 cut(s) 204, 501
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 111
BsaXI ACNNNNNCTCC 2 cut(s) 497, 527
Bsc4I CCNNNNNNNGG 3 cut(s) 157, 409, 502
Bse118I RCCGGY 1 cut(s) 29
Bse1I ACTGG 1 cut(s) 482
BseBI CCWGG 2 cut(s) 102, 112
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 3 cut(s) 255, 470, 485
BseLI CCNNNNNNNGG 3 cut(s) 157, 409, 502
BseMII CTCAG 3 cut(s) 197, 218, 515
BseNI ACTGG 1 cut(s) 482
BseRI GAGGAG 1 cut(s) 109
BseXI GCAGC 2 cut(s) 270, 319
Bsh1236I CGCG 1 cut(s) 84
Bsh1285I CGRYCG 1 cut(s) 34
BshFI GGCC 4 cut(s) 44, 116, 209, 381
BsiEI CGRYCG 1 cut(s) 34
BsiSI CCGG 1 cut(s) 30
BslFI GGGAC 1 cut(s) 74
BslI CCNNNNNNNGG 3 cut(s) 157, 409, 502
BsmFI GGGAC 1 cut(s) 74
BsmI GAATGC 1 cut(s) 528
BsnI GGCC 4 cut(s) 44, 116, 209, 381
Bsp1286I GDGCHC 1 cut(s) 351
Bsp143I GATC 2 cut(s) 124, 370
BspACI CCGC 1 cut(s) 82
BspANI GGCC 4 cut(s) 44, 116, 209, 381
BspCNI CTCAG 3 cut(s) 196, 217, 514
BspFNI CGCG 1 cut(s) 84
BspHI TCATGA 1 cut(s) 240
BspLI GGNNCC 2 cut(s) 28, 210
BspPI GGATC 1 cut(s) 378
BspQI GCTCTTC 1 cut(s) 398
BsrFI RCCGGY 1 cut(s) 29
BsrI ACTGG 1 cut(s) 482
BssAI RCCGGY 1 cut(s) 29
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 2 cut(s) 124, 370
BssNI GRCGYC 1 cut(s) 87
Bst2UI CCWGG 2 cut(s) 102, 112
Bst4CI ACNGT 2 cut(s) 142, 265
Bst6I CTCTTC 1 cut(s) 398
BstACI GRCGYC 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 256
BstDEI CTNAG 3 cut(s) 183, 204, 501
BstF5I GGATG 3 cut(s) 255, 470, 485
BstFNI CGCG 1 cut(s) 84
BstKTI GATC 2 cut(s) 127, 373
BstMBI GATC 2 cut(s) 124, 370
BstMCI CGRYCG 1 cut(s) 34
BstNI CCWGG 2 cut(s) 102, 112
BstNSI RCATGY 1 cut(s) 470
BstSCI CCNGG 2 cut(s) 100, 110
BstUI CGCG 1 cut(s) 84
BstV1I GCAGC 2 cut(s) 270, 319
BstX2I RGATCY 1 cut(s) 370
BstYI RGATCY 1 cut(s) 370
BsuRI GGCC 4 cut(s) 44, 116, 209, 381
BtgZI GCGATG 1 cut(s) 382
BtsCI GGATG 3 cut(s) 255, 470, 485
BtsIMutI CAGTG 1 cut(s) 261
Cac8I GCNNGC 1 cut(s) 256
CciI TCATGA 1 cut(s) 240
Cfr10I RCCGGY 1 cut(s) 29
Cfr13I GGNCC 4 cut(s) 42, 114, 208, 380
CviAII CATG 3 cut(s) 174, 241, 467
DdeI CTNAG 3 cut(s) 183, 204, 501
DpnI GATC 2 cut(s) 126, 372
DpnII GATC 2 cut(s) 124, 370
DraIII CACNNNGTG 1 cut(s) 428
Eam1104I CTCTTC 1 cut(s) 398
EarI CTCTTC 1 cut(s) 398
Eco24I GRGCYC 1 cut(s) 351
EcoO109I RGGNCCY 2 cut(s) 114, 208
EcoRII CCWGG 2 cut(s) 100, 110
EcoT22I ATGCAT 1 cut(s) 472
EcoT38I GRGCYC 1 cut(s) 351
FaeI CATG 3 cut(s) 177, 244, 470
FaiI YATR 5 cut(s) 23, 175, 242, 314, 468
FalI AAGNNNNNCTT 4 cut(s) 357, 389, 377, 409
FaqI GGGAC 1 cut(s) 74
FatI CATG 3 cut(s) 173, 240, 466
FauI CCCGC 1 cut(s) 89
Fnu4HI GCNGC 2 cut(s) 259, 308
FokI GGATG 3 cut(s) 262, 457, 472
FriOI GRGCYC 1 cut(s) 351
Fsp4HI GCNGC 2 cut(s) 259, 308
GluI GCNGC 2 cut(s) 259, 308
GsuI CTGGAG 1 cut(s) 94
HaeIII GGCC 4 cut(s) 44, 116, 209, 381
HapII CCGG 1 cut(s) 30
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 3 cut(s) 177, 244, 470
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HindIII AAGCTT 2 cut(s) 189, 437
HinfI GANTC 3 cut(s) 134, 145, 167
HpaII CCGG 1 cut(s) 30
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 3 cut(s) 124, 186, 475
Hpy188III TCNNGA 4 cut(s) 128, 241, 433, 503
Hpy8I GTNNAC 1 cut(s) 49
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 1 cut(s) 151
HpyCH4III ACNGT 2 cut(s) 142, 265
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 1 cut(s) 470
HpyF3I CTNAG 3 cut(s) 183, 204, 501
HpySE526I ACGT 1 cut(s) 87
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 3 cut(s) 177, 244, 470
Kzo9I GATC 2 cut(s) 124, 370
LguI GCTCTTC 1 cut(s) 398
LmnI GCTCC 1 cut(s) 26
Lsp1109I GCAGC 2 cut(s) 270, 319
LweI GCATC 1 cut(s) 479
MaeII ACGT 1 cut(s) 87
MalI GATC 2 cut(s) 126, 372
MboI GATC 2 cut(s) 124, 370
MboII GAAGA 4 cut(s) 48, 166, 365, 385
MflI RGATCY 1 cut(s) 370
MhlI GDGCHC 1 cut(s) 351
MluCI AATT 3 cut(s) 220, 285, 406
MlyI GAGTC 1 cut(s) 154
MmeI TCCRAC 1 cut(s) 498
MnlI CCTC 6 cut(s) 79, 108, 127, 130, 499, 543
Mph1103I ATGCAT 1 cut(s) 472
MseI TTAA 4 cut(s) 216, 227, 405, 441
MspI CCGG 1 cut(s) 30
MspR9I CCNGG 2 cut(s) 102, 112
Mva1269I GAATGC 1 cut(s) 528
MvaI CCWGG 2 cut(s) 102, 112
MvnI CGCG 1 cut(s) 84
NdeII GATC 2 cut(s) 124, 370
NlaIII CATG 3 cut(s) 177, 244, 470
NlaIV GGNNCC 2 cut(s) 28, 210
NsiI ATGCAT 1 cut(s) 472
NspI RCATGY 1 cut(s) 470
PagI TCATGA 1 cut(s) 240
PciSI GCTCTTC 1 cut(s) 398
PctI GAATGC 1 cut(s) 528
PfeI GAWTC 2 cut(s) 134, 167
PkrI GCNGC 2 cut(s) 260, 309
PleI GAGTC 1 cut(s) 153
PpsI GAGTC 1 cut(s) 153
Psp6I CCWGG 2 cut(s) 100, 110
PspGI CCWGG 2 cut(s) 100, 110
PspN4I GGNNCC 2 cut(s) 28, 210
PspPI GGNCC 4 cut(s) 42, 114, 208, 380
PsuI RGATCY 1 cut(s) 370
SapI GCTCTTC 1 cut(s) 398
SaqAI TTAA 4 cut(s) 216, 227, 405, 441
SatI GCNGC 2 cut(s) 259, 308
Sau3AI GATC 2 cut(s) 124, 370
Sau96I GGNCC 4 cut(s) 42, 114, 208, 380
SchI GAGTC 1 cut(s) 154
ScrFI CCNGG 2 cut(s) 102, 112
SduI GDGCHC 1 cut(s) 351
SetI ASST 8 cut(s) 71, 90, 166, 193, 331, 342, 441, 510
SfaNI GCATC 1 cut(s) 479
Sse9I AATT 3 cut(s) 220, 285, 406
SsiI CCGC 1 cut(s) 82
StyD4I CCNGG 2 cut(s) 100, 110
TaaI ACNGT 2 cut(s) 142, 265
TaiI ACGT 1 cut(s) 90
TaqI TCGA 2 cut(s) 34, 170
TasI AATT 3 cut(s) 220, 285, 406
TfiI GAWTC 2 cut(s) 134, 167
Tru1I TTAA 4 cut(s) 216, 227, 405, 441
Tru9I TTAA 4 cut(s) 216, 227, 405, 441
TscAI CASTG 1 cut(s) 268
TseI GCWGC 2 cut(s) 258, 307
TspDTI ATGAA 3 cut(s) 229, 385, 474
TspGWI ACGGA 1 cut(s) 71
TspRI CASTG 1 cut(s) 268
XapI RAATTY 1 cut(s) 220
XceI RCATGY 1 cut(s) 470
ZraI GACGTC 1 cut(s) 88
Zsp2I ATGCAT 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.