Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002859.1

Orthogroup ID

OG0005253

Physical Location & Seq

Genomic Coordinates Forward (+)

57940 .. 60697

Gene Structure 2758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002859.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

atggaggagttcccctctcatctatcaaatgggaagtgcatgctcacaatagaagcaaaggacaatgaaaagtccatcgaatctctagatagaggactcacagagtatggttgtccgcattatcggcgaaggtgccgcattagggctccttgttgcaatgagatttttgattgtcgccattgtcataatgaagcaaagaacaatattaatgttgaaccaaaactcagacatgacataccacggcatcaagtcgaacaggtgatatgttcactttgtggcactgagcaagaggttcaacaagtctgtgtcaactgtggtgtatgcatgggcaaatacttctgtgagacatgcaagctatttgatgatgatatatcgaagaaacagtaccattgcgatggctgtgggatatgcagaattggggggcgtgataatttctttcattgctacaaatgtggctgctgctactcaattctgctgaaaaacagtcacccttgtgtggaaggagcaatgcatcatgactgccctgtttgcttcgagttcttatttgactcaagaaatgatgttacagtgatgccatgtggacacactattcacaagcattgcttgaaagagatgagagaccatttgcaatatgcttgccctctttgctccaagtcagtttgtgatatgtccaaggtatgggagaaatatgatatggagatcgcagctacaccaatgcccgaaccatatcaaaataaacaagtttcaattctgtgcaacgactgtgggaagagctcacaagtgcagtttcacattgtggcgcagaaatgctcaaattgcaaatcttacaatactcgccaaacaagaggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0002039 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

ko04115 ko04120 ko05162 map04115 map04120 map05162

Pfam Domains

Protein Families

zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

283

Amino Acids

32.51

Weight (kDa)

7.14

Isoelectric Point (pI)

55.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25560 AT5G25560 AT5G25560 AT5G25560 AT5G25560 AT5G25560
fragaria_vesca	FvH4_2g30250 FvH4_2g30250 FvH4_2g30250
malus_domestica	MD08G1135100.v1.1 MD15G1113900.v1.1
prunus_persica	Prupe.1G465000_v2.0.a1
pyrus_communis	pycom08g11400 pycom15g10220
rosa_chinensis	RchiOBHm_Chr6g0312621
rosa_laevigata	RLG00000010310
rosa_multiflora	Rmu_co8415537.1_g000003 Rmu_sc0002859.1_g000008 Rmu_ssc0000412.1_g000002
rosa_roxburghii	Rroxscaffold_7G00156640
rosa_rugosa	Rorug06G0397500 Rorug06G0397600 Rorug06G0397700 Rorug06G0397800
rosa_samantha	Rh6AG515000 Rh6BG525000 Rh6CG530400 Rh6DG517100
rosa_wichuraiana	Rw6G044740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	132
AccB7I	CCANNNNNTGG	1 cut(s)	678
AciI	CCGC	2 cut(s)	116, 136
AdeI	CACNNNGTG	2 cut(s)	275, 796
AfaI	GTAC	1 cut(s)	386
AfiI	CCNNNNNNNGG	3 cut(s)	142, 496, 678
AgsI	TTSAA	4 cut(s)	215, 296, 607, 747
AleI	CACNNNNGTG	1 cut(s)	492
AluBI	AGCT	3 cut(s)	355, 707, 774
AluI	AGCT	3 cut(s)	355, 707, 774
Alw21I	GWGCWC	1 cut(s)	776
Alw26I	GTCTC	2 cut(s)	338, 612
ApeKI	GCWGC	3 cut(s)	456, 459, 704
AseI	ATTAAT	1 cut(s)	207
AspLEI	GCGC	1 cut(s)	802
AsuHPI	GGTGA	2 cut(s)	271, 479
BanI	GGYRCC	1 cut(s)	132
BanII	GRGCYC	2 cut(s)	148, 776
BarI	GAAGNNNNNNTAC	2 cut(s)	368, 400
Bbv12I	GWGCWC	1 cut(s)	776
BbvI	GCAGC	3 cut(s)	443, 446, 716
BccI	CCATC	2 cut(s)	83, 389
BceAI	ACGGC	1 cut(s)	257
BcoDI	GTCTC	2 cut(s)	338, 612
BfaI	CTAG	1 cut(s)	86
BisI	GCNGC	4 cut(s)	136, 457, 460, 705
BlsI	GCNGC	4 cut(s)	137, 458, 461, 706
BmiI	GGNNCC	2 cut(s)	134, 147
BmsI	GCATC	3 cut(s)	253, 520, 561
BplI	GAGNNNNNCTC	1 cut(s)	31
BpuEI	CTTGAG	1 cut(s)	535
BsaI	GGTCTC	1 cut(s)	612
BsaJI	CCNNGG	2 cut(s)	239, 672
Bsc4I	CCNNNNNNNGG	3 cut(s)	142, 496, 678
Bse3DI	GCAATG	5 cut(s)	163, 388, 439, 513, 598
BseDI	CCNNGG	2 cut(s)	239, 672
BseLI	CCNNNNNNNGG	3 cut(s)	142, 496, 678
BseMI	GCAATG	5 cut(s)	163, 388, 439, 513, 598
BseMII	CTCAG	2 cut(s)	238, 273
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	3 cut(s)	443, 446, 716
BsgI	GTGCAG	1 cut(s)	803
BshNI	GGYRCC	1 cut(s)	132
BsiHKAI	GWGCWC	1 cut(s)	776
BslI	CCNNNNNNNGG	3 cut(s)	142, 496, 678
BsmAI	GTCTC	2 cut(s)	338, 612
Bso31I	GGTCTC	1 cut(s)	612
Bsp1286I	GDGCHC	2 cut(s)	148, 776
Bsp143I	GATC	1 cut(s)	699
BspACI	CCGC	2 cut(s)	116, 136
BspCNI	CTCAG	2 cut(s)	237, 274
BspHI	TCATGA	1 cut(s)	514
BspLI	GGNNCC	2 cut(s)	134, 147
BspQI	GCTCTTC	1 cut(s)	764
BspT107I	GGYRCC	1 cut(s)	132
BspTNI	GGTCTC	1 cut(s)	612
BsrDI	GCAATG	5 cut(s)	163, 388, 439, 513, 598
BssECI	CCNNGG	2 cut(s)	239, 672
BssMI	GATC	1 cut(s)	699
BssT1I	CCWWGG	1 cut(s)	672
Bst4CI	ACNGT	5 cut(s)	314, 384, 485, 568, 764
Bst6I	CTCTTC	1 cut(s)	764
BstC8I	GCNNGC	3 cut(s)	41, 353, 637
BstDEI	CTNAG	2 cut(s)	224, 282
BstDSI	CCRYGG	1 cut(s)	239
BstHHI	GCGC	1 cut(s)	802
BstKTI	GATC	1 cut(s)	702
BstMAI	GTCTC	2 cut(s)	338, 612
BstMBI	GATC	1 cut(s)	699
BstMWI	GCNNNNNNNGC	4 cut(s)	124, 528, 645, 816
BstNSI	RCATGY	2 cut(s)	43, 351
BstV1I	GCAGC	3 cut(s)	443, 446, 716
BstXI	CCANNNNNNTGG	1 cut(s)	395
BtgI	CCRYGG	1 cut(s)	239
BtgZI	GCGATG	1 cut(s)	408
BtsIMutI	CAGTG	2 cut(s)	279, 573
Cac8I	GCNNGC	3 cut(s)	41, 353, 637
CciI	TCATGA	1 cut(s)	514
CfoI	GCGC	1 cut(s)	802
Csp6I	GTAC	1 cut(s)	385
CspCI	CAANNNNNGTGG	2 cut(s)	745, 780
CviAII	CATG	6 cut(s)	40, 230, 325, 348, 515, 576
CviJI	RGCY	7 cut(s)	146, 355, 399, 456, 707, 774, 849
CviKI_1	RGCY	7 cut(s)	146, 355, 399, 456, 707, 774, 849
CviQI	GTAC	1 cut(s)	385
DdeI	CTNAG	2 cut(s)	224, 282
DpnI	GATC	1 cut(s)	701
DpnII	GATC	1 cut(s)	699
DraIII	CACNNNGTG	2 cut(s)	275, 796
Eam1104I	CTCTTC	1 cut(s)	764
EarI	CTCTTC	1 cut(s)	764
Ecl136II	GAGCTC	1 cut(s)	774
Eco130I	CCWWGG	1 cut(s)	672
Eco24I	GRGCYC	2 cut(s)	148, 776
Eco31I	GGTCTC	1 cut(s)	612
Eco53kI	GAGCTC	1 cut(s)	774
EcoICRI	GAGCTC	1 cut(s)	774
EcoT14I	CCWWGG	1 cut(s)	672
EcoT22I	ATGCAT	2 cut(s)	326, 513
EcoT38I	GRGCYC	2 cut(s)	148, 776
ErhI	CCWWGG	1 cut(s)	672
FaeI	CATG	6 cut(s)	43, 233, 328, 351, 518, 579
FalI	AAGNNNNNCTT	2 cut(s)	587, 619
FatI	CATG	6 cut(s)	39, 229, 324, 347, 514, 575
Fnu4HI	GCNGC	4 cut(s)	136, 457, 460, 705
FriOI	GRGCYC	2 cut(s)	148, 776
Fsp4HI	GCNGC	4 cut(s)	136, 457, 460, 705
FspBI	CTAG	1 cut(s)	86
GlaI	GCGC	1 cut(s)	801
GluI	GCNGC	4 cut(s)	136, 457, 460, 705
HhaI	GCGC	1 cut(s)	802
Hin1II	CATG	6 cut(s)	43, 233, 328, 351, 518, 579
Hin6I	GCGC	1 cut(s)	800
HinP1I	GCGC	1 cut(s)	800
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HinfI	GANTC	3 cut(s)	80, 96, 548
HphI	GGTGA	2 cut(s)	271, 479
Hpy166II	GTNNAC	3 cut(s)	269, 310, 581
Hpy188I	TCNGA	1 cut(s)	227
Hpy188III	TCNNGA	3 cut(s)	86, 515, 552
Hpy8I	GTNNAC	3 cut(s)	269, 310, 581
HpyAV	CCTTC	2 cut(s)	123, 494
HpyCH4III	ACNGT	5 cut(s)	314, 384, 485, 568, 764
HpyF10VI	GCNNNNNNNGC	4 cut(s)	124, 528, 645, 816
HpyF3I	CTNAG	2 cut(s)	224, 282
Hsp92II	CATG	6 cut(s)	43, 233, 328, 351, 518, 579
HspAI	GCGC	1 cut(s)	800
Kzo9I	GATC	1 cut(s)	699
LguI	GCTCTTC	1 cut(s)	764
LmnI	GCTCC	3 cut(s)	151, 503, 653
LpnPI	CCDG	2 cut(s)	242, 537
Lsp1109I	GCAGC	3 cut(s)	443, 446, 716
LweI	GCATC	3 cut(s)	253, 520, 561
MaeI	CTAG	1 cut(s)	86
MaeIII	GTNAC	2 cut(s)	485, 562
MalI	GATC	1 cut(s)	701
MboI	GATC	1 cut(s)	699
MboII	GAAGA	2 cut(s)	388, 781
MhlI	GDGCHC	2 cut(s)	148, 776
MluCI	AATT	5 cut(s)	414, 430, 468, 747, 814
MlyI	GAGTC	2 cut(s)	90, 542
MnlI	CCTC	5 cut(s)	25, 86, 283, 651, 839
Mph1103I	ATGCAT	2 cut(s)	326, 513
MseI	TTAA	1 cut(s)	207
MslI	CAYNNNNRTG	2 cut(s)	393, 492
MwoI	GCNNNNNNNGC	4 cut(s)	124, 528, 645, 816
NdeII	GATC	1 cut(s)	699
NlaIII	CATG	6 cut(s)	43, 233, 328, 351, 518, 579
NlaIV	GGNNCC	2 cut(s)	134, 147
NmuCI	GTSAC	1 cut(s)	485
NsiI	ATGCAT	2 cut(s)	326, 513
NspI	RCATGY	2 cut(s)	43, 351
OliI	CACNNNNGTG	1 cut(s)	492
PaeI	GCATGC	1 cut(s)	43
PagI	TCATGA	1 cut(s)	514
PciSI	GCTCTTC	1 cut(s)	764
PfeI	GAWTC	1 cut(s)	80
PflMI	CCANNNNNTGG	1 cut(s)	678
PkrI	GCNGC	4 cut(s)	137, 458, 461, 706
PleI	GAGTC	2 cut(s)	90, 542
PpsI	GAGTC	2 cut(s)	90, 542
PshBI	ATTAAT	1 cut(s)	207
Psp124BI	GAGCTC	1 cut(s)	776
PspN4I	GGNNCC	2 cut(s)	134, 147
RsaI	GTAC	1 cut(s)	386
RsaNI	GTAC	1 cut(s)	385
RseI	CAYNNNNRTG	2 cut(s)	393, 492
SacI	GAGCTC	1 cut(s)	776
SapI	GCTCTTC	1 cut(s)	764
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	4 cut(s)	136, 457, 460, 705
Sau3AI	GATC	1 cut(s)	699
SchI	GAGTC	2 cut(s)	90, 542
SduI	GDGCHC	2 cut(s)	148, 776
SetI	ASST	7 cut(s)	134, 261, 294, 357, 678, 709, 776
SfaNI	GCATC	3 cut(s)	253, 520, 561
SmiMI	CAYNNNNRTG	2 cut(s)	393, 492
SmlI	CTYRAG	1 cut(s)	550
SmoI	CTYRAG	1 cut(s)	550
SphI	GCATGC	1 cut(s)	43
Sse9I	AATT	5 cut(s)	414, 430, 468, 747, 814
SsiI	CCGC	2 cut(s)	116, 136
SspI	AATATT	1 cut(s)	205
SspMI	CTAG	1 cut(s)	86
SstI	GAGCTC	1 cut(s)	776
StyI	CCWWGG	1 cut(s)	672
TaaI	ACNGT	5 cut(s)	314, 384, 485, 568, 764
TaqI	TCGA	4 cut(s)	78, 252, 374, 534
TasI	AATT	5 cut(s)	414, 430, 468, 747, 814
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	2 cut(s)	286, 573
TseFI	GTSAC	1 cut(s)	485
TseI	GCWGC	3 cut(s)	456, 459, 704
Tsp45I	GTSAC	1 cut(s)	485
TspDTI	ATGAA	3 cut(s)	81, 204, 428
TspRI	CASTG	2 cut(s)	286, 573
Van91I	CCANNNNNTGG	1 cut(s)	678
VspI	ATTAAT	1 cut(s)	207
XbaI	TCTAGA	1 cut(s)	85
XceI	RCATGY	2 cut(s)	43, 351
XspI	CTAG	1 cut(s)	86
Zsp2I	ATGCAT	2 cut(s)	326, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.