Rw6G044740

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0005253
Physical Location & Seq
Reverse (-)
67883010 .. 67884997
1988 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G044740.1

Sequence Viewer

Length: 840 bp
ATGCTTACACAGAGAGTGATGGAGGAGTTCCACTCTCATCTATCAAATGGGAAGTGCATGCTCACAATAGAAGCAAAGGACAATGAAAAGTCCATCGAATCTCTAGATAGAGGACTCACAGAGTATGGTTGTCCGCATTATCGGCGAAGGTGCCGCATTAGGGCTCCTTGTTGCAATGAGATTTTTGATTGTCGCCATTGTCATAATGAAGCAAAGAACAATATTAATGTTGAACCAAAACTCAGACATGACATACCACGGCATCAAGTCGAACAGGTGATATGTTCACTTTGTGGCACTGAGCAAGAGGTTCAACAAGTCTGTGTCAACTGTGGTGTATGCATGGGCAAATACTTCTGTGAGACATGCAAGCTATTTGATGATGATATATCGAAGAAACAGTACCATTGCGATGGCTGTGGGATATGCAGAATTGGGGGGCGTGATAATTTCTTTCATTGCTACAAATGTGGCTGCTGCTACTCAATTCTGCTGAAAAACAGTCACCCTTGTGTGGAAGGAGCAATGCATCATGACTGCCCTGTTTGCTTCGAGTTCTTATTCGACTCAAGAAATGATGTTACAGTGATGCCATGTGGACACACTATTCACAAGCATTGCTTGAAAGAGATGAGAGACCATTTGCAATATGCTTGCCCTCTTTGCTCCAAGTCAGTTTGTGATATGTCCAAGGTATGGGAGAAATATGATATGGAGATCGCAGCTACACCAATGCCCGAACCATATCAAAATAAACAAAGCTCACAAGTGCAGTTTCACATTGTGGCGCAGAAATGCTCAAATTGCAAATCTTACAATACTCGCCAAACAAGAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0002039 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

279

Amino Acids

32.25

Weight (kDa)

7.43

Isoelectric Point (pI)

55.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CHY PF05495 44 - 118 4.5e-19 CHY zinc finger
zf-RING_2 PF13639 179 - 222 3.1e-08 Ring finger domain
zf-RING_5 PF14634 179 - 224 3e-07 zinc-RING finger domain
zf-C3HC4 PF00097 180 - 222 8.7e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 180 - 220 9.9e-06 RING-type zinc-finger
zinc_ribbon_6 PF14599 227 - 275 4.1e-13 Zinc-ribbon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 150
AccB7I CCANNNNNTGG 1 cut(s) 696
AciI CCGC 2 cut(s) 134, 154
AdeI CACNNNGTG 2 cut(s) 293, 784
AfaI GTAC 1 cut(s) 404
AfiI CCNNNNNNNGG 3 cut(s) 160, 514, 696
AgsI TTSAA 3 cut(s) 233, 314, 625
AleI CACNNNNGTG 1 cut(s) 510
AluBI AGCT 3 cut(s) 373, 725, 762
AluI AGCT 3 cut(s) 373, 725, 762
Alw26I GTCTC 2 cut(s) 356, 630
ApeKI GCWGC 3 cut(s) 474, 477, 722
AseI ATTAAT 1 cut(s) 225
AspLEI GCGC 1 cut(s) 790
AsuHPI GGTGA 2 cut(s) 289, 497
BanI GGYRCC 1 cut(s) 150
BanII GRGCYC 1 cut(s) 166
BarI GAAGNNNNNNTAC 2 cut(s) 386, 418
BbvI GCAGC 3 cut(s) 461, 464, 734
BccI CCATC 3 cut(s) 13, 101, 407
BceAI ACGGC 1 cut(s) 275
BcoDI GTCTC 2 cut(s) 356, 630
BfaI CTAG 1 cut(s) 104
BisI GCNGC 4 cut(s) 154, 475, 478, 723
BlsI GCNGC 4 cut(s) 155, 476, 479, 724
BmiI GGNNCC 2 cut(s) 152, 165
BmsI GCATC 3 cut(s) 271, 538, 579
BplI GAGNNNNNCTC 2 cut(s) 17, 49
BpuEI CTTGAG 1 cut(s) 553
BsaI GGTCTC 1 cut(s) 630
BsaJI CCNNGG 2 cut(s) 257, 690
Bsc4I CCNNNNNNNGG 3 cut(s) 160, 514, 696
Bse3DI GCAATG 5 cut(s) 181, 406, 457, 531, 616
BseDI CCNNGG 2 cut(s) 257, 690
BseLI CCNNNNNNNGG 3 cut(s) 160, 514, 696
BseMI GCAATG 5 cut(s) 181, 406, 457, 531, 616
BseMII CTCAG 2 cut(s) 256, 291
BseRI GAGGAG 1 cut(s) 38
BseXI GCAGC 3 cut(s) 461, 464, 734
BsgI GTGCAG 1 cut(s) 791
BshNI GGYRCC 1 cut(s) 150
BslI CCNNNNNNNGG 3 cut(s) 160, 514, 696
BsmAI GTCTC 2 cut(s) 356, 630
Bso31I GGTCTC 1 cut(s) 630
Bsp1286I GDGCHC 1 cut(s) 166
Bsp143I GATC 1 cut(s) 717
BspACI CCGC 2 cut(s) 134, 154
BspCNI CTCAG 2 cut(s) 255, 292
BspHI TCATGA 1 cut(s) 532
BspLI GGNNCC 2 cut(s) 152, 165
BspT107I GGYRCC 1 cut(s) 150
BspTNI GGTCTC 1 cut(s) 630
BsrDI GCAATG 5 cut(s) 181, 406, 457, 531, 616
BssECI CCNNGG 2 cut(s) 257, 690
BssMI GATC 1 cut(s) 717
BssT1I CCWWGG 1 cut(s) 690
Bst4CI ACNGT 4 cut(s) 332, 402, 503, 586
BstC8I GCNNGC 3 cut(s) 59, 371, 655
BstDEI CTNAG 2 cut(s) 242, 300
BstDSI CCRYGG 1 cut(s) 257
BstHHI GCGC 1 cut(s) 790
BstKTI GATC 1 cut(s) 720
BstMAI GTCTC 2 cut(s) 356, 630
BstMBI GATC 1 cut(s) 717
BstMWI GCNNNNNNNGC 4 cut(s) 142, 546, 663, 804
BstNSI RCATGY 2 cut(s) 61, 369
BstV1I GCAGC 3 cut(s) 461, 464, 734
BstXI CCANNNNNNTGG 1 cut(s) 413
BtgI CCRYGG 1 cut(s) 257
BtgZI GCGATG 1 cut(s) 426
BtsIMutI CAGTG 2 cut(s) 297, 591
Cac8I GCNNGC 3 cut(s) 59, 371, 655
CciI TCATGA 1 cut(s) 532
CfoI GCGC 1 cut(s) 790
Csp6I GTAC 1 cut(s) 403
CviAII CATG 6 cut(s) 58, 248, 343, 366, 533, 594
CviJI RGCY 7 cut(s) 164, 373, 417, 474, 725, 762, 837
CviKI_1 RGCY 7 cut(s) 164, 373, 417, 474, 725, 762, 837
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 2 cut(s) 242, 300
DpnI GATC 1 cut(s) 719
DpnII GATC 1 cut(s) 717
DraIII CACNNNGTG 2 cut(s) 293, 784
Eco130I CCWWGG 1 cut(s) 690
Eco24I GRGCYC 1 cut(s) 166
Eco31I GGTCTC 1 cut(s) 630
EcoT14I CCWWGG 1 cut(s) 690
EcoT22I ATGCAT 2 cut(s) 344, 531
EcoT38I GRGCYC 1 cut(s) 166
ErhI CCWWGG 1 cut(s) 690
FaeI CATG 6 cut(s) 61, 251, 346, 369, 536, 597
FalI AAGNNNNNCTT 2 cut(s) 605, 637
FatI CATG 6 cut(s) 57, 247, 342, 365, 532, 593
Fnu4HI GCNGC 4 cut(s) 154, 475, 478, 723
FriOI GRGCYC 1 cut(s) 166
Fsp4HI GCNGC 4 cut(s) 154, 475, 478, 723
FspBI CTAG 1 cut(s) 104
GlaI GCGC 1 cut(s) 789
GluI GCNGC 4 cut(s) 154, 475, 478, 723
HhaI GCGC 1 cut(s) 790
Hin1II CATG 6 cut(s) 61, 251, 346, 369, 536, 597
Hin6I GCGC 1 cut(s) 788
HinP1I GCGC 1 cut(s) 788
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HinfI GANTC 3 cut(s) 98, 114, 566
HphI GGTGA 2 cut(s) 289, 497
Hpy166II GTNNAC 3 cut(s) 287, 328, 599
Hpy188I TCNGA 1 cut(s) 245
Hpy188III TCNNGA 3 cut(s) 104, 533, 570
Hpy8I GTNNAC 3 cut(s) 287, 328, 599
HpyAV CCTTC 2 cut(s) 141, 512
HpyCH4III ACNGT 4 cut(s) 332, 402, 503, 586
HpyCH4V TGCA 9 cut(s) 57, 174, 342, 369, 429, 529, 646, 772, 807
HpyF10VI GCNNNNNNNGC 4 cut(s) 142, 546, 663, 804
HpyF3I CTNAG 2 cut(s) 242, 300
Hsp92II CATG 6 cut(s) 61, 251, 346, 369, 536, 597
HspAI GCGC 1 cut(s) 788
Kzo9I GATC 1 cut(s) 717
LmnI GCTCC 3 cut(s) 169, 521, 671
LpnPI CCDG 2 cut(s) 260, 555
Lsp1109I GCAGC 3 cut(s) 461, 464, 734
LweI GCATC 3 cut(s) 271, 538, 579
MaeI CTAG 1 cut(s) 104
MaeIII GTNAC 2 cut(s) 503, 580
MalI GATC 1 cut(s) 719
MboI GATC 1 cut(s) 717
MboII GAAGA 1 cut(s) 406
MhlI GDGCHC 1 cut(s) 166
MluCI AATT 4 cut(s) 432, 448, 486, 802
MlyI GAGTC 2 cut(s) 108, 560
MnlI CCTC 5 cut(s) 16, 104, 301, 669, 827
Mph1103I ATGCAT 2 cut(s) 344, 531
MseI TTAA 1 cut(s) 225
MslI CAYNNNNRTG 2 cut(s) 411, 510
MwoI GCNNNNNNNGC 4 cut(s) 142, 546, 663, 804
NdeII GATC 1 cut(s) 717
NlaIII CATG 6 cut(s) 61, 251, 346, 369, 536, 597
NlaIV GGNNCC 2 cut(s) 152, 165
NmuCI GTSAC 1 cut(s) 503
NsiI ATGCAT 2 cut(s) 344, 531
NspI RCATGY 2 cut(s) 61, 369
OliI CACNNNNGTG 1 cut(s) 510
PaeI GCATGC 1 cut(s) 61
PagI TCATGA 1 cut(s) 532
PfeI GAWTC 1 cut(s) 98
PflMI CCANNNNNTGG 1 cut(s) 696
PkrI GCNGC 4 cut(s) 155, 476, 479, 724
PleI GAGTC 2 cut(s) 108, 560
PpsI GAGTC 2 cut(s) 108, 560
PshBI ATTAAT 1 cut(s) 225
PspN4I GGNNCC 2 cut(s) 152, 165
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
RseI CAYNNNNRTG 2 cut(s) 411, 510
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 4 cut(s) 154, 475, 478, 723
Sau3AI GATC 1 cut(s) 717
SchI GAGTC 2 cut(s) 108, 560
SduI GDGCHC 1 cut(s) 166
SetI ASST 7 cut(s) 152, 279, 312, 375, 696, 727, 764
SfaNI GCATC 3 cut(s) 271, 538, 579
SmiMI CAYNNNNRTG 2 cut(s) 411, 510
SmlI CTYRAG 1 cut(s) 568
SmoI CTYRAG 1 cut(s) 568
SphI GCATGC 1 cut(s) 61
Sse9I AATT 4 cut(s) 432, 448, 486, 802
SsiI CCGC 2 cut(s) 134, 154
SspI AATATT 1 cut(s) 223
SspMI CTAG 1 cut(s) 104
StyI CCWWGG 1 cut(s) 690
TaaI ACNGT 4 cut(s) 332, 402, 503, 586
TaqI TCGA 5 cut(s) 96, 270, 392, 552, 564
TasI AATT 4 cut(s) 432, 448, 486, 802
TauI GCSGC 1 cut(s) 156
TfiI GAWTC 1 cut(s) 98
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 2 cut(s) 304, 591
TseFI GTSAC 1 cut(s) 503
TseI GCWGC 3 cut(s) 474, 477, 722
Tsp45I GTSAC 1 cut(s) 503
TspDTI ATGAA 3 cut(s) 99, 222, 446
TspRI CASTG 2 cut(s) 304, 591
Van91I CCANNNNNTGG 1 cut(s) 696
VspI ATTAAT 1 cut(s) 225
XbaI TCTAGA 1 cut(s) 103
XceI RCATGY 2 cut(s) 61, 369
XspI CTAG 1 cut(s) 104
Zsp2I ATGCAT 2 cut(s) 344, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.